Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13940 321 / 1e-105 DNA binding;DNA-directed RNA polymerases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020738 [exp] 811 / 0 AT3G13940 319 / 1e-105 DNA binding;DNA-directed RNA polymerases (.1) Lus10007389 [exp] 133 / 5e-38 AT3G13940 56 / 8e-11 DNA binding;DNA-directed RNA polymerases (.1) Lus10027606 [exp] 94 / 6e-23 ND 38 / 6e-04
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G198600 [exp] 418 / 4e-143 AT3G13940 328 / 4e-108 DNA binding;DNA-directed RNA polymerases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0662 [flax] [poplar] Triple_barrel PF06870 [flax] [poplar] RNA_pol_I_A49 A49-like RNA polymerase I associated factor
Representative CDS sequence Show only first row Show all	>Lus10029818 pacid=23159629 polypeptide=Lus10029818 locus=Lus10029818.g ID=Lus10029818.BGIv1.0 annot-version=v1.0 ATGGGGACTGTGGATGAACCACAGTTATACTCCGACACCGCTACGAACCCAGAACCCCTAAAAAGTTCGAAGAAGAAGAAGAAGGGAAAGAAGGCGGATA AAGAGGATGTCCATTATACTCCTGCTGCTGTTACTATGAACGTTAAGGTCGAGCTGATTCACGACCGGACTGATCGGATGTTGCCGGTGGTAGGCTACTT CCCGACTGGCTACAATCCTCAGAATGACGACGTCGGTGATGGCGAGCAATCCGCGCCTCCTACGATGAATCTGTACAAGAATAACGTCCAGAGGGTGAAG ATTGATACTGCAGGATCTGCAGCTAAGAGTTCGATTCGTAGAGGCCCCGAGAGACTGGAGCTGGTGGTGACTCCAGAAGGATCGAAGCTTGATTTCGTCG GTACAAGTTATAGAGGGGAAGCAAGTAACGCCCAGCTGGCTACTTATGCTCTTGGAGTTCTGGATAAGGATACCAATACTTTGAAGATTATGCCCATCGC TGGTAACAAGATATTCCGAATGGAACCGGTTCTTCGAGGGCGTGCCAACTCAGCTAATGAGGACACTTCAAAAGAAGATGCTGAGCTTTCTGCAAAACAG CAGTCGGCGAAGAAGAGACGTCTTCTTGATCAATATTCAACCAAGAAGTCTGTAGCACGGGACAAGAAGATGCATAATCTTTCTGAGGGGTTCGATCTGG AATCTCAGCCTGATTTGGGCAATAAAATAAGCAGTATCGAAATAAACCAGGAAGCTCTAACTAGCAATGCTGGTTTCGATGTTGCTCGAAACATCCCGCC GCATAATGCTAATGCCACAGTGCCTAGGGAAGCCTATCCATTGGATAGGATTATTGCAAACAATGATTGGGACGTTCTTAATGATATAGATAGGATTCTG GAAGCTGGTGGTTGTCCTGTATTCGTTCGCAATCGGATCCATAAGCTGCGTGATGTTCAGGATGATTTCGAGAGGGATACTCTCGCTGGAATTCTTTGTT ACATAACGCATCTTGTCAAGTTCAAGGCCTTGCAGTACATGGATACTGCAGCAGCTGCGAGAAATCACAGATTCCCGCACTACTTTAAGGATAAGTTTCG GGAGATGTTCAATCCGGAGGGGGAGTCGAGAAGAATGCCGAGTGATAAACAGAATCTGTTGATCAGCTATGTTCTGGTTCTTTCCTTGCACTTTGACGAT TTCAGGACAGACCCTGCTGATATAGCTACGGACCTGGGAAAGAGCGTGGTAGATTTGAGACAACATTATGAGTACTTGGGATGCAAGTTTGTGAATGATG AAAACAAGGTGCGGGTGGCAACCCTCCCGGTCCCTATCCGATTTCCAGAACCAAGGCGGAAACGAAACCGGAAGCAGCATTAG
AA sequence Show only first row Show all	>Lus10029818 pacid=23159629 polypeptide=Lus10029818 locus=Lus10029818.g ID=Lus10029818.BGIv1.0 annot-version=v1.0 MGTVDEPQLYSDTATNPEPLKSSKKKKKGKKADKEDVHYTPAAVTMNVKVELIHDRTDRMLPVVGYFPTGYNPQNDDVGDGEQSAPPTMNLYKNNVQRVK IDTAGSAAKSSIRRGPERLELVVTPEGSKLDFVGTSYRGEASNAQLATYALGVLDKDTNTLKIMPIAGNKIFRMEPVLRGRANSANEDTSKEDAELSAKQ QSAKKRRLLDQYSTKKSVARDKKMHNLSEGFDLESQPDLGNKISSIEINQEALTSNAGFDVARNIPPHNANATVPREAYPLDRIIANNDWDVLNDIDRIL EAGGCPVFVRNRIHKLRDVQDDFERDTLAGILCYITHLVKFKALQYMDTAAAARNHRFPHYFKDKFREMFNPEGESRRMPSDKQNLLISYVLVLSLHFDD FRTDPADIATDLGKSVVDLRQHYEYLGCKFVNDENKVRVATLPVPIRFPEPRRKRNRKQH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G13940			DNA binding;DNA-directed RNA p...		Lus10029818 [exp]	0	1
AT1G77470		EMB2810, RFC5, ...	replication factor C 5, EMBRYO...		Lus10025689 [exp]	3.9	0.8460
AT3G09500			Ribosomal L29 family protein ...		Lus10003306 [exp]	4.4	0.8862
AT1G36240			Ribosomal protein L7Ae/L30e/S1...		Lus10019681 [exp]	8.7	0.8817
AT1G80750			Ribosomal protein L30/L7 famil...		Lus10019603 [exp]	9.8	0.8685
AT5G63010			Transducin/WD40 repeat-like su...		Lus10039042 [exp]	11.2	0.8676
AT5G05920		DHS, EDA22	embryo sac development arrest ...		Lus10029688 [exp]	14.7	0.8134
AT5G10360		RPS6B, EMB3010	Ribosomal protein small subuni...		Lus10027260 [exp]	19.2	0.8805
AT4G14320			Zinc-binding ribosomal protein...		Lus10010195 [exp]	21.3	0.8687
AT3G10530			Transducin/WD40 repeat-like su...		Lus10035740 [exp]	21.6	0.8302
AT2G18290		EMB2783, APC10	EMBRYO DEFECTIVE 2783, anaphas...		Lus10041756 [exp]	21.9	0.8222

Compare expression of checked genes

Lus10029818 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.