Plant FIBer expression Database

Lus10029819 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G30880 520 / 0 Pleckstrin homology (PH) domain-containing protein (.1), Pleckstrin homology (PH) domain-containing protein (.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10020739
[exp]
825 / 0 AT2G30880 620 / 0.0 Pleckstrin homology (PH) domain-containing protein (.1), Pleckstrin homology (PH) domain-containing protein (.2)
Lus10027607
[exp]
56 / 8e-10 AT2G30880 63 / 2e-13 Pleckstrin homology (PH) domain-containing protein (.1), Pleckstrin homology (PH) domain-containing protein (.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G057300
[exp]
621 / 0 AT2G30880 573 / 0.0 Pleckstrin homology (PH) domain-containing protein (.1), Pleckstrin homology (PH) domain-containing protein (.2)
Potri.005G205300
[exp]
608 / 0 AT2G30880 556 / 0.0 Pleckstrin homology (PH) domain-containing protein (.1), Pleckstrin homology (PH) domain-containing protein (.2)
Potri.003G001400
[exp]
45 / 0.0001 AT1G10290 1253 / 0.0 DYNAMIN-RELATED PROTEIN 2A, dynamin-like protein 6 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0266 PH PF00169 PH PH domain
Representative CDS sequence
>Lus10029819 pacid=23159785 polypeptide=Lus10029819 locus=Lus10029819.g ID=Lus10029819.BGIv1.0 annot-version=v1.0
ATGGTTGTTGATCGGTTGCTTGTGATCGTGGGCTATACTGGGAAGCAGCATAGGGCAGTTGAGCCTGAGAACAGTTTGGAGAAGATCAAGCGGCAGCTGG
CGTCTGGTTCCGGAAGAAATTTGCTGCAAGGCCCACTCCTTAAGCGATCCGAGACTCTGAGAAAATGGAATGAGCGCTGGGTGATTTTGGATCCTACAAC
TGGGAAAATGGATTACAAGACTAGAAGAAATGAAACAGCTGTCAAGGGGTCTATTTTCTTCGATGCCAATAGTACAATTACCATTTCCCCTGTTAACTTC
CAGGGGCTTCCAAAGTATGATGGTTGCTGTTTCTACTTAGATATTGGTACGCCACAGAGAAAAGACTACTTCCTTTGCGCAGAGACTCCTGGTGCTGCTA
GAGCTTGGGTGACGACATTACAGGCATCTCAGTTGGTCCTCAAAGCCCATAAAGAAGCTGTAAATTCCTTGAGTGGAAATGGGTCTGCAAAGTTGGGTAC
AGTTGCCACAGTAGTTGCTGCTGCAAATTCTACTGCGTTAGAATGCTCTAAAGAGATTGAAGCAGCAATGCAGATCTCATTGAGAAACGCTCTTGGCACT
GTTGTCAATAAGGCACTTGATGAACCAATGGATGACCTGACAATTATGAAGGAGACGCTGAGAGTGAAGGATGAAGAACTGCAGAATCTGGCTAGAGATG
TTCGTGCCCGTGATTCAACAATAAGGGCCATTGCTGAGAAACTTACAGAGACTGCCGAAGCTGCAGAGGCTGCCGCATCTGCAGCTCACACAATGGATGA
ACAGAGAAGAAAGGCATGCAATGAGCTTGAACGCATTTCAAAAGCCTCACAAAAGCAGTTTGAATCATCCAAGCTGAAGCTGAAAGAATATGAAGAGAAA
GTCGGGTCCCTAAGCAACGAGAGGGGTGAATTGATCAAACAAAGAGACTCAGCTCTGCAGGAAGCACATTTATGGCGTACCGAGCTTGCAAAAGCTAGAG
AGCGCGCAGTTATATTAGAGGGGGCGGCGGTACGAGCAGAGGAGAAGGTGAGAGTTGCAGAGGCAGATGCTGAAGCTAGAGTCAAAGAAGCTACAGATCG
GGAGCACGTTGCTCTACAGGAGAAGCAAGAGCTTCTAGCGTATGTCAACGTATTGCAGGAAAAACTCCAAAGATTATCCACTTCGGAAAGTAAGCAGATT
AATATAGTAGCTGTTTTGATGTCAACTTCTGTTCTGCATGGTATCAACAGACAGCAAATAGATAAGAAGCAGGTTTTTGAGGAGAAAACTGAGTCGTCAG
ATCCTAGCTCCCACGATCTTCCGCAGACTAAAGATGTGGACTTGACCGATGCAAATGTTGACAAAGCTTGTCTAAGCGATTCCAGATCCGTCCCCGATTC
CGGAGAGAACGTAGTGACAGTGGACCAAGCCAACCTCCGGACAATTACAGACACCCAATGGAGCGATATTCAAGCAACCGAGTCGAGGGTAGCCGACGTA
AGAGAGATTCCGACCGAGAGCGAAAGAAGCAGCAGCAGCCATGACATTGCAGTCGTCAGCACACCTGAAACGGCGAGTAATCATCATGATCAAGGGACTA
ACAGTTTCGATCAGCCTTGA
AA sequence
>Lus10029819 pacid=23159785 polypeptide=Lus10029819 locus=Lus10029819.g ID=Lus10029819.BGIv1.0 annot-version=v1.0
MVVDRLLVIVGYTGKQHRAVEPENSLEKIKRQLASGSGRNLLQGPLLKRSETLRKWNERWVILDPTTGKMDYKTRRNETAVKGSIFFDANSTITISPVNF
QGLPKYDGCCFYLDIGTPQRKDYFLCAETPGAARAWVTTLQASQLVLKAHKEAVNSLSGNGSAKLGTVATVVAAANSTALECSKEIEAAMQISLRNALGT
VVNKALDEPMDDLTIMKETLRVKDEELQNLARDVRARDSTIRAIAEKLTETAEAAEAAASAAHTMDEQRRKACNELERISKASQKQFESSKLKLKEYEEK
VGSLSNERGELIKQRDSALQEAHLWRTELAKARERAVILEGAAVRAEEKVRVAEADAEARVKEATDREHVALQEKQELLAYVNVLQEKLQRLSTSESKQI
NIVAVLMSTSVLHGINRQQIDKKQVFEEKTESSDPSSHDLPQTKDVDLTDANVDKACLSDSRSVPDSGENVVTVDQANLRTITDTQWSDIQATESRVADV
REIPTESERSSSSHDIAVVSTPETASNHHDQGTNSFDQP

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G30880 Pleckstrin homology (PH) domai... Lus10029819
[exp]
0 1
AT1G12360 KEU keule, Sec1/munc18-like (SM) p... Lus10032196
[exp]
6.2 0.8854
AT5G53530 VPS26A vacuolar protein sorting 26A (... Lus10008868
[exp]
14.3 0.8795
AT5G61910 DCD (Development and Cell Deat... Lus10032533
[exp]
16.7 0.8348
AT1G17440 CKH1, TAF12b, E... TBP-ASSOCIATED FACTOR 12B, ENH... Lus10006528
[exp]
18.0 0.8632
AT5G19450 CPK8, CDPK19 calcium-dependent protein kina... Lus10027361
[exp]
20.2 0.7969
AT5G10290 leucine-rich repeat transmembr... Lus10000629
[exp]
21.0 0.8513
AT2G30880 Pleckstrin homology (PH) domai... Lus10020739
[exp]
22.8 0.8826
AT5G19280 FHA RAG1, KAPP ROOT ATTENUATED GROWTH 1, kina... Lus10041216
[exp]
24.6 0.8650
AT5G22000 RHF2A, CIC7E11 RING-H2 group F2A (.1.2.3) Lus10013374
[exp]
28.2 0.8568
AT5G27540 MIRO1, EMB2473 embryo defective 2473, MIRO-re... Lus10015186
[exp]
28.5 0.8641

Lus10029819 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.