Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06570 513 / 0 HPPD, HPD, PDS1 4-hydroxyphenylpyruvate dioxygenase, phytoene desaturation 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020740 [exp] 667 / 0 AT1G06570 659 / 0.0 4-hydroxyphenylpyruvate dioxygenase, phytoene desaturation 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G057400 [exp] 563 / 0 AT1G06570 646 / 0.0 4-hydroxyphenylpyruvate dioxygenase, phytoene desaturation 1 (.1.2) Potri.005G205200 [exp] 440 / 1e-154 AT1G06570 435 / 9e-152 4-hydroxyphenylpyruvate dioxygenase, phytoene desaturation 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0104 [flax] [poplar] Glyoxalase PF00903 [flax] [poplar] Glyoxalase Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10029820 pacid=23159644 polypeptide=Lus10029820 locus=Lus10029820.g ID=Lus10029820.BGIv1.0 annot-version=v1.0 ATGGATATTCATTTAGATGGATTTGGATTTCGAACCATCTATAGGCGGAGAGCCTCTCCCACACCGCCACAGCTTCTTTGCCGATCTTCGATCACGACGC CTCCCGCCGATTCTCCGCCAACCGAGGCCGAGAGCCTCTCCCACACCGCTACAGCTTCTTTGCCGACCTTCGATCACGACGCCTCCCGCCGATTCTCCGC CAAGCACGGCCTCGCCGTTCGTGCTGTAGCGATCGAAGTCGAGGACGCCGAGCTGGCGTTCCGTGCAAGCGTCGCTCACGGCGCTAGACCATCGGCCGAA CCTGCAGTTCTCGACGGTCGTGCCGTAGTTGCTGAGGTGGAACTCTACGGCGACGTCGTTTTGCGGTACGTGAGTTACAAGAACCCTATCCATTCAACCA ATTCAGGTCCGGATTCATGGTTTCTCCCCAAATTCGAGGCAGTAGACGAAGCATCAGCGTTCCCTCTGGATTACGGGATCCGACGATTGGACCACGCCGT CGGGAATGTGCCGGAATTGGGACCGGCGGTGGCCTACGTTAAAGAGTTCACCGGCTTTCACGAGTTTGCTGAGTTCACCGCAGCGGATGTGGGGACGAGT GAGAGCGGATTGAACTCGGCGGTGTTGGCTAACAACGAGGAAATGGTACTGCTGCCGATGAACGAGCCTGTATATGGAACGAAGAGGAAGAGCCAAATAC AGACGTATCTGGAGCACAACGAAGGAGCTGGGGTGCAGCATTTGGCTCTGATGTCTGAAGATATCTTCAGGACGTTGAGAGAGATGAGGAGTAGAAGTGG CATTGGTGGATTTGAGTTCATGCCGTCTCCCCCGCCTACCTACTACAAGAACTTGAAGAACAGAGCAGGGGATGTGCTGAGCGACGAGCAGATTAAGCAG TGCGAGGAGTTGGGGATCTTGGTGGATAAAGATGATCAGGGCACTCTGCTTCAGATCTTCACCAAACCTGTTGGAGACAGACCGACCATCTTCATCGAGA TAATCCAACGAGTAGGGTGCATGATGAAGGACGATGCAGGGAAAGATTACCAGAAAGGTGGCTGCGGTGGATTCGGGAAGGGCAACTTCTCAGAGCTCTT CAAGTCCATCGAGGAGTACGAGAAGACACTCGAGGCAAAGCGACCTGCAGAAGGCACAGTTTCAGCTTAG
AA sequence Show only first row Show all	>Lus10029820 pacid=23159644 polypeptide=Lus10029820 locus=Lus10029820.g ID=Lus10029820.BGIv1.0 annot-version=v1.0 MDIHLDGFGFRTIYRRRASPTPPQLLCRSSITTPPADSPPTEAESLSHTATASLPTFDHDASRRFSAKHGLAVRAVAIEVEDAELAFRASVAHGARPSAE PAVLDGRAVVAEVELYGDVVLRYVSYKNPIHSTNSGPDSWFLPKFEAVDEASAFPLDYGIRRLDHAVGNVPELGPAVAYVKEFTGFHEFAEFTAADVGTS ESGLNSAVLANNEEMVLLPMNEPVYGTKRKSQIQTYLEHNEGAGVQHLALMSEDIFRTLREMRSRSGIGGFEFMPSPPPTYYKNLKNRAGDVLSDEQIKQ CEELGILVDKDDQGTLLQIFTKPVGDRPTIFIEIIQRVGCMMKDDAGKDYQKGGCGGFGKGNFSELFKSIEEYEKTLEAKRPAEGTVSA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06570		HPPD, HPD, PDS1	4-hydroxyphenylpyruvate dioxyg...		Lus10029820 [exp]	0	1
AT1G16180			Serinc-domain containing serin...		Lus10008709 [exp]	1.7	0.9194
AT1G14870		AtPCR2, PCR2	PLANT CADMIUM RESISTANCE 2 (.1...		Lus10043325 [exp]	2.0	0.9103
AT2G27285			Coiled-coil domain-containing ...		Lus10039072 [exp]	3.2	0.8749
AT3G49390		CID10	CTC-interacting domain 10 (.1....		Lus10032942 [exp]	4.0	0.8795
AT5G01830			ARM repeat superfamily protein...		Lus10006090 [exp]	4.0	0.8950
AT2G30490		REF3, CYP73A5, ...	REDUCED EPRDERMAL FLUORESCENCE...		Lus10021671 [exp]	4.2	0.8953
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10018477 [exp]	5.9	0.8795
AT4G16210		ECHIA, E-COAH-2	ENOYL-COA HYDRATASE 2, enoyl-C...		Lus10037777 [exp]	6.9	0.8710
AT5G17165			unknown protein		Lus10002135 [exp]	7.2	0.8701
AT2G02960			RING/FYVE/PHD zinc finger supe...		Lus10037172 [exp]	8.7	0.8932

Compare expression of checked genes

Lus10029820 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.