Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06410 1253 / 0 ATTPSA, ATTPS7 TREHALOSE -6-PHOSPHATASE SYNTHASE S7, trehalose-phosphatase/synthase 7 (.1) AT4G17770 1087 / 0 ATTPS5 TREHALOSE -6-PHOSPHATASE SYNTHASE S5, trehalose phosphatase/synthase 5 (.1) AT1G68020 1077 / 0 ATTPS6 TREHALOSE -6-PHOSPHATASE SYNTHASE S6, UDP-Glycosyltransferase / trehalose-phosphatase family protein (.1.2) AT1G70290 1013 / 0 ATTPSC, ATTPS8 trehalose-6-phosphatase synthase S8 (.1) AT1G60140 1000 / 0 ATTPS10 TREHALOSE PHOSPHATE SYNTHASE 10, trehalose phosphate synthase (.1) AT1G23870 996 / 0 ATTPS9 TREHALOSE -6-PHOSPHATASE SYNTHASE S9, trehalose-phosphatase/synthase 9 (.1) AT2G18700 966 / 0 ATTPSB, ATTPS11 TREHALOSE-6-PHOSPHATE SYNTHASE 11, trehalose phosphatase/synthase 11 (.1) AT1G16980 410 / 1e-130 ATTPS2 TREHALOSE -6-PHOSPHATASE SYNTHASE S2, trehalose-phosphatase/synthase 2 (.1) AT1G78580 411 / 1e-129 ATTPS1 TREHALOSE-6-PHOSPHATE SYNTHASE 1, trehalose-6-phosphate synthase (.1) AT4G27550 387 / 7e-122 ATTPS4 ARABIDOPSIS THALIANA TREHALOSE PHOSPHATASE/SYNTHASE 4, trehalose-6-phosphatase synthase S4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020741 [exp] 1667 / 0 AT1G06410 1278 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S7, trehalose-phosphatase/synthase 7 (.1) Lus10007311 [exp] 1235 / 0 AT1G06410 1347 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S7, trehalose-phosphatase/synthase 7 (.1) Lus10029258 [exp] 1224 / 0 AT1G06410 1338 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S7, trehalose-phosphatase/synthase 7 (.1) Lus10005425 [exp] 1221 / 0 AT1G06410 1338 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S7, trehalose-phosphatase/synthase 7 (.1) Lus10015231 [exp] 1217 / 0 AT1G06410 1337 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S7, trehalose-phosphatase/synthase 7 (.1) Lus10034585 [exp] 1090 / 0 AT1G68020 1462 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S6, UDP-Glycosyltransferase / trehalose-phosphatase family protein (.1.2) Lus10021805 [exp] 1073 / 0 AT1G68020 1452 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S6, UDP-Glycosyltransferase / trehalose-phosphatase family protein (.1.2) Lus10030853 [exp] 1057 / 0 AT1G60140 1388 / 0.0 TREHALOSE PHOSPHATE SYNTHASE 10, trehalose phosphate synthase (.1) Lus10030635 [exp] 1046 / 0 AT1G60140 1367 / 0.0 TREHALOSE PHOSPHATE SYNTHASE 10, trehalose phosphate synthase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G070900 [exp] 1268 / 0 AT1G06410 1343 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S7, trehalose-phosphatase/synthase 7 (.1) Potri.004G061500 [exp] 1249 / 0 AT1G06410 1286 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S7, trehalose-phosphatase/synthase 7 (.1) Potri.003G094500 [exp] 1135 / 0 AT4G17770 1442 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S5, trehalose phosphatase/synthase 5 (.1) Potri.001G139500 [exp] 1101 / 0 AT4G17770 1429 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S5, trehalose phosphatase/synthase 5 (.1) Potri.010G104500 [exp] 1090 / 0 AT1G68020 1415 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S6, UDP-Glycosyltransferase / trehalose-phosphatase family protein (.1.2) Potri.008G136500 [exp] 1070 / 0 AT1G68020 1410 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S6, UDP-Glycosyltransferase / trehalose-phosphatase family protein (.1.2) Potri.012G078500 [exp] 1046 / 0 AT1G23870 1284 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S9, trehalose-phosphatase/synthase 9 (.1) Potri.015G074000 [exp] 1035 / 0 AT1G23870 1285 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S9, trehalose-phosphatase/synthase 9 (.1) Potri.018G097700 [exp] 952 / 0 AT2G18700 1118 / 0.0 TREHALOSE-6-PHOSPHATE SYNTHASE 11, trehalose phosphatase/synthase 11 (.1) Potri.006G175500 [exp] 949 / 0 AT2G18700 1151 / 0.0 TREHALOSE-6-PHOSPHATE SYNTHASE 11, trehalose phosphatase/synthase 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF02358 [flax] [poplar] Trehalose_PPase Trehalose-phosphatase CL0113 [flax] [poplar] GT-B PF00982 [flax] [poplar] Glyco_transf_20 Glycosyltransferase family 20
Representative CDS sequence Show only first row Show all	>Lus10029821 pacid=23159666 polypeptide=Lus10029821 locus=Lus10029821.g ID=Lus10029821.BGIv1.0 annot-version=v1.0 ATGACGTCCAGATCGTACACCAATCTACTGGACCTGGCGAAGGGGAATTTTCAGAACATTAATCCGGAGAGGAAGGGACTGCCGAGGGTTATGAGCGTTC CTGACAAATTCTCTGACATCGAAGAAGAAGAGCCATTTTCTTCCGATAATCCGTCGACAGTATCCGCAGACAGGGTGATCATTGTCTCGAACCAGCTTCC GGTGAAGGTCACCAGGAATCCTGATGACAAAGGCTGGGGTTTCGCTTGGAACGGGGACTCCCTGATTCTGCAGCTCAAGGATGGATTCCCGGAAGAAATG GAGGTTTTCTACGTGGGTTCGTTGAGCGTCGAAGTCGACTCCAAGGACCAGGATGAAGTGTCTCAGGTTCTTTTAGACAGATTCAAGTGTGTCCCGACAT TCCTCCCTCACGAAATTTACACCAAGTTCTACGACGGTTTCTGCAAGAAGCAGCTCTGGCCGCTTTTCCATTACATGCTCCCTTCTGTAGAGGAAGGCAG TCGATTCGACAGGTCCTTGTGGGAAGCATACGTGGCAGCGAACAGGTTGTTCTTACAGAACGTGGTCGAGATTCTTAACCCGGACGATGATTTCATTTGG ATTCATGATTACCATTTGATGTTGCTGCCGACTTACTTGAGGAGGCGGTTTAACAGAATCAGGATTGGGTTCTTCCTTCACAGTCCATTCCCATCTTCTG AGATTTACAGAACTCTTCCAGTGAGGGAAGAGATACTCAAGGCATTGCTGAATACTGATCTCATCGGGTTCCATACTTTCGATTACGCTCGACATTTTCT TTCCTGCTGCTGCAGAATGTTGGGACTCGAGTATCAGTCGAAGAGGGGTTACCTTGCGTTGGAATACTTTGGAAGAACTATTGGGATCAAGATCATGCCG GTTGGGGTTCACATGGGAAGGATTCTGTCTGTTATGAGACAGACTGATGAAGAATCCTGGATTGTTGATCTGAAGAAGAGATATGAAGGTAAAACAGTGT TGCTTGGAGTGGATGATATGGACATATTTAAAGGGATCAATCTGAAGCTGCTGGCTATGGAGCAGATGCTGAAGCAGCATCCTATCTGGAAAGGAAAGGC TGTGTTGGTTCAAATTCTGAACCCTGCAAGAGGCAAAGGGAACGACTCAGAGGATATTAGAGCTGAGATCCAAGAAAGCTGCAGGAGGATTAATGAAATG TTTGGAAGTCCAGGTTACGAACCGGTAGTGATTGTTGACAAACCGATATTGGTTGGTGAACGAGTTGCTTATCACAGCATTGCTGAGTGTGTTGTGGTTA CAGCTGTGAGGGATGGAATGAATCTAACACCTTATGAATACGTAGTTTGCAGGCAAGGCAGTGAAACCTGTACAAACTTCCGTGGTTCGAAAAAAAGCAT GCTAGTGATATCGGAGTTCATCGGATGCTCTCCATCCATGAGCGGAGCGATTCGTGTCAACCCTTGGAACGTTGAGGCAACAGGCGAGGCGATGAACCAG GCGATTTCGACTTTCGAATCCGAACAGGAGCTCCGACACGAGAAGCATTATCGATATATTAGTACTCATGATGTCGCTTACTGGTCGAGGAGTTTCTTGC ATGACTTGAAGAGGAGTTGTGCTGATCACAGTAGAAAGATGTGCTGGGGGATAGGGTTTGGGTTCGGGTTCAGAGTGATGGCTCTTGACCCGAATTTCAG GAAGCTGTCCGGTGCGATTATTGTTTCGGCTTATAAGATGGCAAAGAGTAGAGCAATATTGCTGGACTATGATGGTACTGTCATGCCTCAGAACACCATC AATAAATCGCCGACACAGGAGGTGGTATCGATTATTAATCGACTTTGTGATGATCCGAATAATACGGTTTTCATTGTTAGTGGACGAGGGAGGGACAGTT TGACTGAGTGGTTTTCTCCTTGTAAGAAGCTTGGTATTGCTGCAGAACATGGTTACTTCCTAAGATGGACGCAAGATGAAGGATGGACGACCTGTGTGCA GAGCAGCGAATTCGGGTGGATGGAGATTGCAAGACCTGTGATGAACTTGTATACAGAATCAACTGATGGGTCTTCAATCGAAACCAAGGAAAGTGCTCTG GTTTGGCAATACCGGGATTCAGACCCTCGATTCGGATCAGCTCAAGCGAAGGAGCTGCTAGATCATTTAGAGAGTGTTCTGGCAAATGAGCCTGTTGCTG TGAAAAGTGGTCAGTGTATTGTAGAAGTGAAGCCTCAGGAAGTGAGCAAGGGTGTGGTTGCTGAGAAAATATTCGCAGCACTGTCGGAGAAGGGGAAGAA GGCCGATTTCGTGCTGTGCATAGGAGACGACAGGTCGGATGAAGATATGTTTGAGGCAATCGGGAATGCTGTAGCGAGGGAAGTTCTAGAGTCGAATGCT TCCGTGTTTGCTTGCACAGTTGAGCAGAAACCCAGCAAGGCCAAGTACTACCTGGATGACATTGCTGAAGTTATCAGCACACTTGAGTCCCTAGCTGATG TCTCCAATCAACAATAA
AA sequence Show only first row Show all	>Lus10029821 pacid=23159666 polypeptide=Lus10029821 locus=Lus10029821.g ID=Lus10029821.BGIv1.0 annot-version=v1.0 MTSRSYTNLLDLAKGNFQNINPERKGLPRVMSVPDKFSDIEEEEPFSSDNPSTVSADRVIIVSNQLPVKVTRNPDDKGWGFAWNGDSLILQLKDGFPEEM EVFYVGSLSVEVDSKDQDEVSQVLLDRFKCVPTFLPHEIYTKFYDGFCKKQLWPLFHYMLPSVEEGSRFDRSLWEAYVAANRLFLQNVVEILNPDDDFIW IHDYHLMLLPTYLRRRFNRIRIGFFLHSPFPSSEIYRTLPVREEILKALLNTDLIGFHTFDYARHFLSCCCRMLGLEYQSKRGYLALEYFGRTIGIKIMP VGVHMGRILSVMRQTDEESWIVDLKKRYEGKTVLLGVDDMDIFKGINLKLLAMEQMLKQHPIWKGKAVLVQILNPARGKGNDSEDIRAEIQESCRRINEM FGSPGYEPVVIVDKPILVGERVAYHSIAECVVVTAVRDGMNLTPYEYVVCRQGSETCTNFRGSKKSMLVISEFIGCSPSMSGAIRVNPWNVEATGEAMNQ AISTFESEQELRHEKHYRYISTHDVAYWSRSFLHDLKRSCADHSRKMCWGIGFGFGFRVMALDPNFRKLSGAIIVSAYKMAKSRAILLDYDGTVMPQNTI NKSPTQEVVSIINRLCDDPNNTVFIVSGRGRDSLTEWFSPCKKLGIAAEHGYFLRWTQDEGWTTCVQSSEFGWMEIARPVMNLYTESTDGSSIETKESAL VWQYRDSDPRFGSAQAKELLDHLESVLANEPVAVKSGQCIVEVKPQEVSKGVVAEKIFAALSEKGKKADFVLCIGDDRSDEDMFEAIGNAVAREVLESNA SVFACTVEQKPSKAKYYLDDIAEVISTLESLADVSNQQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06410		ATTPSA, ATTPS7	TREHALOSE -6-PHOSPHATASE SYNTH...		Lus10029821 [exp]	0	1
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Lus10029280 [exp]	3.3	0.9545
AT2G30770		CYP71A13	cytochrome P450, family 71, su...		Lus10043310 [exp]	4.7	0.9379
AT1G09155		ATPP2-B15	phloem protein 2-B15 (.1)		Lus10029872 [exp]	14.0	0.9332
AT5G15430			Plant calmodulin-binding prote...		Lus10000141 [exp]	14.8	0.9301
AT1G01470		LSR3, LEA14	LIGHT STRESS-REGULATED 3, LATE...		Lus10010140 [exp]	15.5	0.9290
AT4G28050		TET7	tetraspanin7 (.1)		Lus10038964 [exp]	16.1	0.8784
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10024910 [exp]	19.3	0.9123
AT1G24590	AP2_ERF	ESR2, DRNL, SOB...	FOR SUPPRESSOR OF PHYTOCHROMEB...		Lus10017907 [exp]	21.3	0.8016
AT1G11340			S-locus lectin protein kinase ...		Lus10036139 [exp]	21.5	0.9237
AT1G28030			2-oxoglutarate (2OG) and Fe(II...		Lus10037429 [exp]	22.2	0.7934

Compare expression of checked genes

Lus10029821 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.