Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10260 330 / 3e-115 Reticulon family protein (.1.2.3) AT3G61560 209 / 1e-67 Reticulon family protein (.1.2) AT2G46170 203 / 2e-65 Reticulon family protein (.1.2) AT4G23630 200 / 9e-64 RTNLB1, BTI1 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) AT4G11220 194 / 1e-61 RTNLB2, BTI2 Reticulan like protein B2, VIRB2-interacting protein 2 (.1) AT5G41600 189 / 8e-60 RTNLB4, BTI3 Reticulan like protein B4, VIRB2-interacting protein 3 (.1) AT3G18260 188 / 8e-60 Reticulon family protein (.1) AT1G64090 187 / 5e-59 RTNLB3 Reticulan like protein B3 (.1.2) AT4G01230 157 / 2e-47 Reticulon family protein (.1) AT3G10915 133 / 3e-38 Reticulon family protein (.1.2.3.4.5.6)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020718 [exp] 498 / 0 AT3G10260 325 / 2e-113 Reticulon family protein (.1.2.3) Lus10027548 [exp] 221 / 4e-72 AT1G64090 316 / 2e-109 Reticulan like protein B3 (.1.2) Lus10014948 [exp] 217 / 1e-70 AT4G23630 306 / 3e-105 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Lus10027546 [exp] 217 / 1e-70 AT4G11220 307 / 5e-106 Reticulan like protein B2, VIRB2-interacting protein 2 (.1) Lus10038833 [exp] 216 / 3e-70 AT5G41600 308 / 3e-106 Reticulan like protein B4, VIRB2-interacting protein 3 (.1) Lus10039307 [exp] 211 / 4e-68 AT1G64090 307 / 4e-106 Reticulan like protein B3 (.1.2) Lus10032313 [exp] 203 / 8e-65 AT4G23630 318 / 1e-109 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Lus10041080 [exp] 202 / 8e-65 AT2G46170 320 / 5e-111 Reticulon family protein (.1.2) Lus10036405 [exp] 201 / 2e-64 AT2G46170 320 / 8e-111 Reticulon family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G055600 [exp] 372 / 5e-132 AT3G10260 330 / 2e-115 Reticulon family protein (.1.2.3) Potri.005G206800 [exp] 358 / 3e-126 AT3G10260 315 / 3e-109 Reticulon family protein (.1.2.3) Potri.001G097700 [exp] 218 / 6e-71 AT4G23630 314 / 2e-108 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Potri.012G035600 [exp] 218 / 9e-71 AT4G23630 296 / 2e-101 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Potri.015G027300 [exp] 215 / 6e-70 AT4G23630 310 / 6e-107 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Potri.003G133600 [exp] 214 / 9e-70 AT4G23630 284 / 8e-97 Reticulan like protein B1, VIRB2-interacting protein 1 (.1) Potri.014G091200 [exp] 209 / 1e-67 AT2G46170 318 / 3e-110 Reticulon family protein (.1.2) Potri.002G165400 [exp] 201 / 2e-64 AT2G46170 311 / 1e-107 Reticulon family protein (.1.2) Potri.013G160900 [exp] 186 / 1e-58 AT4G11220 193 / 4e-61 Reticulan like protein B2, VIRB2-interacting protein 2 (.1) Potri.012G054100 [exp] 159 / 1e-48 AT3G18260 238 / 6e-80 Reticulon family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0484 [flax] [poplar] Peroxisome PF02453 [flax] [poplar] Reticulon Reticulon
Representative CDS sequence Show only first row Show all	>Lus10029822 pacid=23159826 polypeptide=Lus10029822 locus=Lus10029822.g ID=Lus10029822.BGIv1.0 annot-version=v1.0 ATGCCTGAGAAAAGTACTGCAGAGGACATCCTCACAAATCTGGTTGAAACCTTTGCTGAGAACATCCCAAAGCAGAAATCCGGGTCGTTCTTTGAAGAAG ATAACCGAACCGCATTCCAATTCAATAGATTGTTTTCGCGTGAGAAGCCCATCCATCACATCTTGGGTGGTGGCAAATCTGCTGATGTCCTGTTATGGAG GAACAAGAAGATCTCTGCTAGCGTCCTAGCTTCTGCGACTGCAATTTGGGTGCTATTCGAGTGGCTTAATTACCACTTCCTGACTCTCGTGTGCTTGGCT CTGGTCCTCGGTATGCTTGCTCAATTCATGTGGAGGAATGTTTCAGGTCTATTGAACAGGTCACCATCTAAGGTCCCCCGACTTGTGCTGCCTGAGGAGT TGTTTGCCAACATCGGCAAATCTGTTGGTGCAGAGGTTAATCGTGGTCTGCATATGCTTCAAAATGTGTCATGCGGAGGGAACTTGAAACATTTCCTAGT GGCTATAGCGAGCTTGTGGGCTGTTTCAGTGATTGGAAGCTGGTTCAACTTCATAACTGTACTATACATTGGTTTTGTTGCCGCTCACGCACTGCCAGTA CTGTACGAGAGGTACCAGGATCAAGTGGACGACTTCGCCTGCAAGGTATTCGAACAGCTCCGAGGCCATTACCAGAAGCTCGATACGGGTCTCCTGAGCA AGATCCCAAAGGGAAGGGGAAAGAAGGATGACTGA
AA sequence Show only first row Show all	>Lus10029822 pacid=23159826 polypeptide=Lus10029822 locus=Lus10029822.g ID=Lus10029822.BGIv1.0 annot-version=v1.0 MPEKSTAEDILTNLVETFAENIPKQKSGSFFEEDNRTAFQFNRLFSREKPIHHILGGGKSADVLLWRNKKISASVLASATAIWVLFEWLNYHFLTLVCLA LVLGMLAQFMWRNVSGLLNRSPSKVPRLVLPEELFANIGKSVGAEVNRGLHMLQNVSCGGNLKHFLVAIASLWAVSVIGSWFNFITVLYIGFVAAHALPV LYERYQDQVDDFACKVFEQLRGHYQKLDTGLLSKIPKGRGKKDD

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10260			Reticulon family protein (.1.2...		Lus10029822 [exp]	0	1
AT5G06710	HD	HAT14	homeobox from Arabidopsis thal...		Lus10004161 [exp]	4.5	0.9292
AT1G22800			S-adenosyl-L-methionine-depend...		Lus10018987 [exp]	4.5	0.9300
AT2G43370			RNA-binding (RRM/RBD/RNP motif...		Lus10025557 [exp]	4.9	0.9252
AT5G57700			BNR/Asp-box repeat family prot...		Lus10008903 [exp]	5.1	0.9332
AT2G03340	WRKY	WRKY3	WRKY DNA-binding protein 3 (.1...		Lus10015377 [exp]	7.1	0.9205
AT1G12520		ATCCS, CCS1	copper chaperone for SOD1 (.1....		Lus10006686 [exp]	7.3	0.9249
AT3G03720		CAT4	cationic amino acid transporte...		Lus10005687 [exp]	8.0	0.9371
AT1G04950		EMB2781, ATTAF6...	TBP-associated factor 6, EMBRY...		Lus10002443 [exp]	8.4	0.9258
AT5G09960			unknown protein		Lus10006803 [exp]	8.5	0.9204
AT2G02390		GST18, ATGSTZ1	GLUTATHIONE S-TRANSFERASE 18, ...		Lus10030274 [exp]	9.2	0.9224

Compare expression of checked genes

Lus10029822 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.