Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06680 343 / 1e-119 PSII-P, OEE2, PSBP-1, OE23 OXYGEN-EVOLVING ENHANCER PROTEIN 2, OXYGEN EVOLVING COMPLEX SUBUNIT 23 KDA, photosystem II subunit P-1 (.1.2) AT2G30790 209 / 7e-69 PSBP-2 photosystem II subunit P-2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020717 [exp] 474 / 1e-171 AT1G06680 380 / 2e-134 OXYGEN-EVOLVING ENHANCER PROTEIN 2, OXYGEN EVOLVING COMPLEX SUBUNIT 23 KDA, photosystem II subunit P-1 (.1.2) Lus10030326 [exp] 45 / 3e-05 AT3G55330 268 / 7e-91 PsbP-like protein 1 (.1) Lus10003289 [exp] 44 / 5e-05 AT3G55330 267 / 7e-91 PsbP-like protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G206700 [exp] 352 / 3e-123 AT1G06680 400 / 2e-142 OXYGEN-EVOLVING ENHANCER PROTEIN 2, OXYGEN EVOLVING COMPLEX SUBUNIT 23 KDA, photosystem II subunit P-1 (.1.2) Potri.002G055700 [exp] 339 / 2e-118 AT1G06680 382 / 3e-135 OXYGEN-EVOLVING ENHANCER PROTEIN 2, OXYGEN EVOLVING COMPLEX SUBUNIT 23 KDA, photosystem II subunit P-1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0619 [flax] [poplar] Mog1p_PsbP PF01789 [flax] [poplar] PsbP PsbP
Representative CDS sequence Show only first row Show all	>Lus10029823 pacid=23159873 polypeptide=Lus10029823 locus=Lus10029823.g ID=Lus10029823.BGIv1.0 annot-version=v1.0 ATGGCATCCACAGCCTGCTTCCTCCACCACGCCGCACTCACCACCTCCACCAGGACCTCCGCTGCCGCCGGTCAGCGCCTTCAATCTCCCTCCTCCTCCA CCGCCGCAGCCAGGCTAGTTTGCCGGGCTCAGAAACAGCAGTCCACTGAAGATCACGACACCGGCGCCGTATCTCGTAGACTTGCCCTCACTCTCCTCGC CGGAGCTGCCGCAATCGGATCCAAGACCGCCCCCGCCGAGGCTGCCTATGGCGAAACCGCGAACATATTCGGGAAGCCGAAGACGAACACTGAGTTCCAG GAGTACAGCGGGGCGGGATTTAAGCTCTCGATCCCCTCCAAGTGGAACCCTAGCAAAGAGGTTGAGTATCCAGGTCAGGTGATGAGATACGAAGACAACT TCGACGCCAACAGCTACCTCGCTGTGATGGTTAATCCTACTGACAAGAAATCCATCACCGATTACGGATCCCCTGAAGACTTCCTTTCTCAGGTCGCCTT CTTGCTCGGAAAGCAGGCCTACTTCGGCAAGACCGATTCTGAGGGAGGGTTCCAGTCAGGGGAGGTGGCGACGGCCAACATCCTGGAGACATCGGCACCG GTGGTGGGAGGAAAGCAATACTCCATCGTGTCGGTGCTGACGAGGACGGCCGACGGAGACGAAGGAGGGAAGCACCAGCTGATCAGCGCCACCGTGACAG ATGGCAAGCTTTACGTTTGCAAGGCACAAGCCGGAGACAAGAGGTGGTTCAAGGGTGCTAGGAAGTTCGTTGAGAGTGCTGCTACTTCCTTCAGCGTCGC CTAA
AA sequence Show only first row Show all	>Lus10029823 pacid=23159873 polypeptide=Lus10029823 locus=Lus10029823.g ID=Lus10029823.BGIv1.0 annot-version=v1.0 MASTACFLHHAALTTSTRTSAAAGQRLQSPSSSTAAARLVCRAQKQQSTEDHDTGAVSRRLALTLLAGAAAIGSKTAPAEAAYGETANIFGKPKTNTEFQ EYSGAGFKLSIPSKWNPSKEVEYPGQVMRYEDNFDANSYLAVMVNPTDKKSITDYGSPEDFLSQVAFLLGKQAYFGKTDSEGGFQSGEVATANILETSAP VVGGKQYSIVSVLTRTADGDEGGKHQLISATVTDGKLYVCKAQAGDKRWFKGARKFVESAATSFSVA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06680		PSII-P, OEE2, P...	OXYGEN-EVOLVING ENHANCER PROTE...		Lus10029823 [exp]	0	1
AT1G06680		PSII-P, OEE2, P...	OXYGEN-EVOLVING ENHANCER PROTE...		Lus10020717 [exp]	1.0	0.9810
AT3G50820		OEC33, PSBO2, P...	OXYGEN EVOLVING COMPLEX SUBUNI...		Lus10016783 [exp]	3.5	0.9620
AT3G50820		OEC33, PSBO2, P...	OXYGEN EVOLVING COMPLEX SUBUNI...		Lus10022479 [exp]	3.9	0.9538
AT2G06520		PSBX	photosystem II subunit X (.1)		Lus10033434 [exp]	6.3	0.9485
AT1G55670		PSAG	photosystem I subunit G (.1)		Lus10028806 [exp]	6.6	0.9486
AT1G03130		PSAD-2	photosystem I subunit D-2 (.1)		Lus10041209 [exp]	7.5	0.9381
AT4G01150			unknown protein		Lus10010132 [exp]	9.8	0.9442
AT5G46110		TPT, APE2	triose-phosphate ⁄ phosp...		Lus10015399 [exp]	12.3	0.9147
AT3G61470		LHCA2	photosystem I light harvesting...		Lus10006416 [exp]	12.5	0.9287
AT3G46780		PTAC16	plastid transcriptionally acti...		Lus10016502 [exp]	13.3	0.9347

Compare expression of checked genes

Lus10029823 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.