Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03495 67 / 5e-13 HXXXD-type acyl-transferase family protein (.1) AT1G03940 66 / 1e-12 HXXXD-type acyl-transferase family protein (.1) AT5G39090 55 / 7e-09 HXXXD-type acyl-transferase family protein (.1) AT3G29670 47 / 3e-06 PMAT2 phenolic glucoside malonyltransferase 2, HXXXD-type acyl-transferase family protein (.1) AT3G29680 44 / 4e-05 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020714 [exp] 278 / 5e-92 AT1G03495 337 / 1e-111 HXXXD-type acyl-transferase family protein (.1) Lus10033754 [exp] 147 / 1e-41 AT1G03495 299 / 1e-96 HXXXD-type acyl-transferase family protein (.1) Lus10031587 [exp] 144 / 2e-40 AT1G03495 305 / 7e-99 HXXXD-type acyl-transferase family protein (.1) Lus10018507 [exp] 103 / 2e-25 AT1G03495 286 / 2e-90 HXXXD-type acyl-transferase family protein (.1) Lus10039746 [exp] 90 / 1e-20 AT1G03940 304 / 8e-99 HXXXD-type acyl-transferase family protein (.1) Lus10039745 [exp] 84 / 9e-19 AT1G03940 297 / 1e-95 HXXXD-type acyl-transferase family protein (.1) Lus10039721 [exp] 79 / 1e-17 AT1G03495 89 / 1e-20 HXXXD-type acyl-transferase family protein (.1) Lus10041658 [exp] 61 / 1e-10 AT3G29590 298 / 2e-96 HXXXD-type acyl-transferase family protein (.1) Lus10020514 [exp] 60 / 2e-10 AT3G29590 296 / 9e-96 HXXXD-type acyl-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G118101 [exp] 127 / 2e-34 AT1G03940 339 / 2e-112 HXXXD-type acyl-transferase family protein (.1) Potri.019G118000 [exp] 120 / 1e-31 AT1G03940 328 / 6e-108 HXXXD-type acyl-transferase family protein (.1) Potri.009G063500 [exp] 53 / 5e-08 AT1G03940 280 / 4e-89 HXXXD-type acyl-transferase family protein (.1) Potri.004G109800 [exp] 47 / 4e-06 AT5G39050 368 / 2e-123 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G110700 [exp] 47 / 5e-06 AT5G39050 369 / 1e-123 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G110400 [exp] 47 / 5e-06 AT5G39050 363 / 2e-121 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G109300 [exp] 47 / 5e-06 AT5G39050 365 / 3e-122 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G110640 [exp] 47 / 5e-06 AT5G39050 365 / 2e-122 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10029826 pacid=23159839 polypeptide=Lus10029826 locus=Lus10029826.g ID=Lus10029826.BGIv1.0 annot-version=v1.0 ATGGCTTTCGACCATTTTATGAAATCCTGGGCTTCTTTGTTCCGATCCAGATGCGACGTCAGATCCTCCGACGTCCCGCTGCCGTGTCACGATAGGGAAA TGATCAGTGACAAATTCGTCGACTTGGAATCAACCATGCTAAAGCAGTATTTCGAATGGCTATCGTCATGGAACTACGACGCCGGAGTATCTAGACACTT GAACCTCTCCGACAAGGTCCTAGCAACGTTCGTGATCACAAGGTCGCAACTTGAAAGCTTAGGAGACTCATCGGACCATCCGGACAGAATCTACCAGTTC GGCTTCTCTGCCGACTGCCGGCGGCGGCAGAGAATCGATCTACCGCAGACGTACTTCGGGAACTGTATAAATCCGACTCTTATAGCGGGGACGAGAGGGG AGCTTTTGGGAGGAGGAGGGATTGCGAGAGCGGCGGAGTTGATCGGGAAGAGGGTGACGGAGTTGGTGGAGAGCGATGGCGGGGTGGCGGCGGCAGGGAG AGTGGCGGCGGAGAGGAAGGAAGTGGCGGAAGGAGGGAGGGTGATTGTAATTGCCGGGTCGCCGAAGCTGAAGGCTTACGATACGGATTTCGGGTGGTGG AGGCCGAGGAAGAGCGAGGTTGTGCAGGTCGATAGTTCTAGGTCGCAGCGATGGGGCCAGCGGCGTTGA
AA sequence Show only first row Show all	>Lus10029826 pacid=23159839 polypeptide=Lus10029826 locus=Lus10029826.g ID=Lus10029826.BGIv1.0 annot-version=v1.0 MAFDHFMKSWASLFRSRCDVRSSDVPLPCHDREMISDKFVDLESTMLKQYFEWLSSWNYDAGVSRHLNLSDKVLATFVITRSQLESLGDSSDHPDRIYQF GFSADCRRRQRIDLPQTYFGNCINPTLIAGTRGELLGGGGIARAAELIGKRVTELVESDGGVAAAGRVAAERKEVAEGGRVIVIAGSPKLKAYDTDFGWW RPRKSEVVQVDSSRSQRWGQRR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03495			HXXXD-type acyl-transferase fa...		Lus10029826 [exp]	0	1
AT3G15980			Coatomer, beta' subunit (.1.2....		Lus10002324 [exp]	4.4	0.9296
AT1G17860			Kunitz family trypsin and prot...		Lus10030354 [exp]	6.8	0.9136
AT5G12890			UDP-Glycosyltransferase superf...		Lus10025515 [exp]	7.1	0.8582
AT5G42510			Disease resistance-responsive ...		Lus10000376 [exp]	10.8	0.8164
AT5G12890			UDP-Glycosyltransferase superf...		Lus10025514 [exp]	11.3	0.8335
AT1G73990		SPPA1, SPPA	signal peptide peptidase (.1)		Lus10013334 [exp]	13.1	0.8231
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10019728 [exp]	15.5	0.8616
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10016392 [exp]	22.2	0.8245
AT2G27410	B3		Domain of unknown function (DU...		Lus10027286 [exp]	27.1	0.8800
AT5G62350			Plant invertase/pectin methyle...		Lus10031133 [exp]	30.0	0.8782

Compare expression of checked genes

Lus10029826 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.