Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58670 321 / 9e-109 Protein of unknown function (DUF1637) (.1), Protein of unknown function (DUF1637) (.2), Protein of unknown function (DUF1637) (.3) AT2G42670 317 / 2e-107 Protein of unknown function (DUF1637) (.1), Protein of unknown function (DUF1637) (.2) AT5G15120 187 / 6e-56 Protein of unknown function (DUF1637) (.1) AT5G39890 179 / 4e-53 Protein of unknown function (DUF1637) (.1) AT1G18490 167 / 2e-48 Protein of unknown function (DUF1637) (.1) AT5G44410 43 / 0.0003 FAD-binding Berberine family protein (.1) AT1G26400 43 / 0.0003 FAD-binding Berberine family protein (.1) AT1G26390 42 / 0.0006 FAD-binding Berberine family protein (.1) AT4G20820 42 / 0.0007 FAD-binding Berberine family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020711 [exp] 412 / 1e-144 AT3G58670 386 / 8e-138 Protein of unknown function (DUF1637) (.1), Protein of unknown function (DUF1637) (.2), Protein of unknown function (DUF1637) (.3) Lus10017645 [exp] 386 / 2e-134 AT3G58670 390 / 2e-139 Protein of unknown function (DUF1637) (.1), Protein of unknown function (DUF1637) (.2), Protein of unknown function (DUF1637) (.3) Lus10033603 [exp] 379 / 2e-131 AT3G58670 385 / 3e-137 Protein of unknown function (DUF1637) (.1), Protein of unknown function (DUF1637) (.2), Protein of unknown function (DUF1637) (.3) Lus10015360 [exp] 195 / 2e-58 AT5G39890 316 / 6e-108 Protein of unknown function (DUF1637) (.1) Lus10027254 [exp] 184 / 2e-54 AT1G18490 324 / 1e-111 Protein of unknown function (DUF1637) (.1) Lus10038962 [exp] 178 / 2e-52 AT1G18490 332 / 1e-114 Protein of unknown function (DUF1637) (.1) Lus10013620 [exp] 157 / 1e-44 AT5G39890 225 / 7e-73 Protein of unknown function (DUF1637) (.1) Lus10003861 [exp] 157 / 3e-44 AT5G39890 229 / 4e-74 Protein of unknown function (DUF1637) (.1) Lus10038439 [exp] 57 / 2e-08 AT1G30700 540 / 0.0 FAD-binding Berberine family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G058000 [exp] 295 / 2e-98 AT3G58670 320 / 1e-111 Protein of unknown function (DUF1637) (.1), Protein of unknown function (DUF1637) (.2), Protein of unknown function (DUF1637) (.3) Potri.011G067300 [exp] 290 / 1e-96 AT2G42670 316 / 8e-110 Protein of unknown function (DUF1637) (.1), Protein of unknown function (DUF1637) (.2) Potri.004G129400 [exp] 195 / 4e-59 AT5G39890 338 / 1e-117 Protein of unknown function (DUF1637) (.1) Potri.015G055600 [exp] 184 / 1e-54 AT1G18490 341 / 2e-118 Protein of unknown function (DUF1637) (.1) Potri.017G079400 [exp] 181 / 5e-54 AT5G39890 300 / 4e-103 Protein of unknown function (DUF1637) (.1) Potri.013G064200 [exp] 176 / 6e-52 AT5G15120 238 / 4e-78 Protein of unknown function (DUF1637) (.1) Potri.012G057400 [exp] 171 / 4e-50 AT1G18490 329 / 3e-114 Protein of unknown function (DUF1637) (.1) Potri.019G038851 [exp] 170 / 2e-49 AT5G39890 225 / 6e-73 Protein of unknown function (DUF1637) (.1) Potri.001G470100 [exp] 44 / 0.0002 AT1G30700 543 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G459500 [exp] 43 / 0.0003 AT4G20800 559 / 0.0 FAD-binding Berberine family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF07847 [flax] [poplar] PCO_ADO PCO_ADO
Representative CDS sequence Show only first row Show all	>Lus10029828 pacid=23159806 polypeptide=Lus10029828 locus=Lus10029828.g ID=Lus10029828.BGIv1.0 annot-version=v1.0 ATGACGACCACGATTACGAAGGTCTTTCCCTACGTCTTATCCTCCCCTTTCATCTTTCCCGATCTCTATAGCTACAGCTCCATTGTCGTCGACGTCGATT TCCAGACCGCTTGGGTCGATTCCGACGCCACTCTCGACGAGTTTTACCACCCTGGCCCCGCAGAGTTTGGACCACTGTTCGAGTTTGGTTTATTCGCGGG GATCTGGTATCCAACCGGTGACGGGATTGGTTTGAATTTTGGATCCGTTTGGCTATCGGGGACGGGGAAACCCGACGATTGCGGTGGGCGGGGATCAAAT ACACCAAACCCGTTCCCGATCCACCCCGCCCCGATGCCAAGCCTACTTAGTGAAGAGTTCAGTACTGTTATGCAAAAACTGCAGTTACAGTGGTGGCAGA AAGAAGCAAGAGAAGGCGAGGAACCTCGTGACGTGTCCAGAGATCTTCTGCCATTGCGTTACGTTCGTCTCGCTCTCAATGGTACTATTTTCCCTTTCGT CTCTTTCTTTTTGTTCTCGCTCGCTTTTTATACTCCTTGTTCTAGCTCGGCCTGCGATCCATCGATAATCCTCTTCCCCCTTTCCCCTTCAACCCTTCTG CTACCTAACCTTCCGTATACTATTAAGGTATCGCTCCTAGCTAGTCTTTCTGGATCAGCCGCTGCTGATTCCGTAGATTTCATGCTATGTCTCGTGAGTT TGATTGCAGAGAAAATCAAACCCTCTGATGTGGGTCTTGATCAGGAGGCACAATTGGTGCGCAATTGGACAGGTCCTATGCAAGAGCGCAATGGGCATCC TCCAACACTCACTCCAATCAAGCACCTACACTTGCATGAGTGTGACAGCTTCTCTATTGGGATATTCTGCATGCCACCAACTTCCATTATACCTCTTCAT AACCATCCTGGAATGACAGTATTAAGCAAGCTCGTATACGGAACAATGCACGTGAAGTCGTACGATTGGCTTGCTTCATCTGAGCCGGCTGACCCGGCAG AAGCAAGGCCTGCCAAGCTTGTTAAAGACCTGGACATGACTGCACCATGCAATTCGACAGTTCTTTATCCAACCACCGGAGGCAACATCCACTGTTTCAG GGCCATAACACCCTGCGCAATATTTGACATTCTCTCCCCACCTTACTCTTCAGATCATGGACGACACTGCTCTTATTTCCGGACATCTCCAATAAAAGAT CTACCCGGCGAGCTCGGGTTGGATGGAGTCGCAGTTTCGGATGTGACGTGGCTGGAAGAGTTCCAACCTCCCGATAACTTTGTGATACGAAGAGGTCTAT ACAAAGGTCCCCTAATTAGAACTTGA
AA sequence Show only first row Show all	>Lus10029828 pacid=23159806 polypeptide=Lus10029828 locus=Lus10029828.g ID=Lus10029828.BGIv1.0 annot-version=v1.0 MTTTITKVFPYVLSSPFIFPDLYSYSSIVVDVDFQTAWVDSDATLDEFYHPGPAEFGPLFEFGLFAGIWYPTGDGIGLNFGSVWLSGTGKPDDCGGRGSN TPNPFPIHPAPMPSLLSEEFSTVMQKLQLQWWQKEAREGEEPRDVSRDLLPLRYVRLALNGTIFPFVSFFLFSLAFYTPCSSSACDPSIILFPLSPSTLL LPNLPYTIKVSLLASLSGSAAADSVDFMLCLVSLIAEKIKPSDVGLDQEAQLVRNWTGPMQERNGHPPTLTPIKHLHLHECDSFSIGIFCMPPTSIIPLH NHPGMTVLSKLVYGTMHVKSYDWLASSEPADPAEARPAKLVKDLDMTAPCNSTVLYPTTGGNIHCFRAITPCAIFDILSPPYSSDHGRHCSYFRTSPIKD LPGELGLDGVAVSDVTWLEEFQPPDNFVIRRGLYKGPLIRT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G58670			Protein of unknown function (D...		Lus10029828 [exp]	0	1
AT5G47200		AtRABD2b, AtRab...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10000595 [exp]	12.4	0.7329
AT5G25280			serine-rich protein-related (....		Lus10039998 [exp]	24.3	0.7202
AT1G16890		UBC36 ,UBC13B	UBIQUITIN CONJUGATING ENZYME 1...		Lus10017654 [exp]	25.5	0.7143
AT2G40095			Alpha/beta hydrolase related p...		Lus10014849 [exp]	37.5	0.7130
AT4G24470	GATA	GATA25, TIFY1, ...	Zinc-finger protein expressed ...		Lus10032839 [exp]	50.6	0.7126
					Lus10007413 [exp]	54.1	0.6656
AT3G49590		ATG13	autophagy-related 13, Autophag...		Lus10019097 [exp]	54.9	0.6944
AT1G11940			Core-2/I-branching beta-1,6-N-...		Lus10015553 [exp]	56.4	0.7103
AT4G09830			Uncharacterised conserved prot...		Lus10028732 [exp]	63.8	0.6766
AT5G64813		LIP1	Light Insensitive Period1, Ras...		Lus10005795 [exp]	72.8	0.6875

Compare expression of checked genes

Lus10029828 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.