Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37020 339 / 4e-117 Translin family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020710 [exp] 520 / 0 AT2G37020 344 / 6e-119 Translin family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G126200 [exp] 356 / 9e-124 AT2G37020 378 / 3e-132 Translin family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01997 [flax] [poplar] Translin Translin family
Representative CDS sequence Show only first row Show all	>Lus10029829 pacid=23159711 polypeptide=Lus10029829 locus=Lus10029829.g ID=Lus10029829.BGIv1.0 annot-version=v1.0 ATGTCATTTCGAAGCGCATGCTTCAGTCTCTGTCACTCCTCCTTAAACCCTAAATCAACTCACCTTCCGATTTTCCGCGCTCTCAGTCCCACCACAATCG CAGCGTCGTTTTCTTCTCCTCGCCCTCGGCCGTCCCGTTCCTTCTGCTTCTCTCCCTCCATGGATCGACCTGGCGGCGCCGGAGATGAATCTTCCAACTC TCTCTCCTCCCTTGAGAACCAGTTCAAGGGTTTCCGCAGCCAACTGGAGGAATCCAGCTCTTTGCGCGACAGGATAAAGGCGGTAGCGACGGATATTGAG TCCACTACTCGGAGTATGCAAGCCAGTCTCCTCCGCGTCCATCAGTCTCGCCCTGTCCAAGAAATTTTGGATGAGACAAAGGTTCAAATTGGTACGCTGA GGGAGCTGTACAATCAACTTGCTGGAATTGTTCGGGAGGTTCCTGGACAGTATTACAGGTATAATGGTGATTGGAGGACTGAAACTCAGAGTGTGGTTTC CCTGCTTGCTTTTATGCATTGGTTAGAGACTGGAGATCTCCTTATGCACTCAGAAGCTGAGCAAAAACTTGAGCTGAATGGCTCAGAGTTCAGTTTGGAC GTGGAAGACTACCTCGTGGGCATTTGCTTCATGTCAAATGAGATGCCTCGATATGTTATGAACCAAGTGACGGCTGGTAACTACGATTGCCCTAGGAAGG TGTTGAAGTTCCTGACCGACCTCCATGCAGCTTTCCGAATGCTCAATCTCCGGAACGACTTTCTTCGCAAGAAGTTCGATGGCATGAAGTACGACTTAAG AAGAGTTGAAGAAGTGTACTATGATGTCAAGATCCGAGGCTTGTCCGCCAATGGCAATCCTACCGGAGAACAAGGAATCCAGGGCTCGGCATAG
AA sequence Show only first row Show all	>Lus10029829 pacid=23159711 polypeptide=Lus10029829 locus=Lus10029829.g ID=Lus10029829.BGIv1.0 annot-version=v1.0 MSFRSACFSLCHSSLNPKSTHLPIFRALSPTTIAASFSSPRPRPSRSFCFSPSMDRPGGAGDESSNSLSSLENQFKGFRSQLEESSSLRDRIKAVATDIE STTRSMQASLLRVHQSRPVQEILDETKVQIGTLRELYNQLAGIVREVPGQYYRYNGDWRTETQSVVSLLAFMHWLETGDLLMHSEAEQKLELNGSEFSLD VEDYLVGICFMSNEMPRYVMNQVTAGNYDCPRKVLKFLTDLHAAFRMLNLRNDFLRKKFDGMKYDLRRVEEVYYDVKIRGLSANGNPTGEQGIQGSA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37020			Translin family protein (.1.2)		Lus10029829 [exp]	0	1
AT5G47680		AtTRM, TRM10	tRNA modification 10, unknown ...		Lus10039081 [exp]	1.0	0.9113
AT5G41970			Metal-dependent protein hydrol...		Lus10000877 [exp]	4.7	0.8936
AT5G13610			Protein of unknown function (D...		Lus10001978 [exp]	4.7	0.8407
AT3G07590			Small nuclear ribonucleoprotei...		Lus10025186 [exp]	6.0	0.8595
AT1G48830			Ribosomal protein S7e family p...		Lus10017497 [exp]	7.2	0.8723
AT5G58930			Protein of unknown function (D...		Lus10040700 [exp]	8.7	0.8845
AT3G05130			unknown protein		Lus10002255 [exp]	9.2	0.8468
AT3G62870			Ribosomal protein L7Ae/L30e/S1...		Lus10035632 [exp]	11.8	0.8696
AT1G56110		NOP56	homolog of nucleolar protein N...		Lus10017214 [exp]	14.2	0.8614
AT1G15870			Mitochondrial glycoprotein fam...		Lus10026060 [exp]	15.2	0.8338

Compare expression of checked genes

Lus10029829 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.