Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30990 97 / 2e-21 Protein of unknown function (DUF688) (.1), Protein of unknown function (DUF688) (.2), Protein of unknown function (DUF688) (.3) AT1G29240 46 / 6e-05 Protein of unknown function (DUF688) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020709 [exp] 696 / 0 AT2G30990 130 / 1e-32 Protein of unknown function (DUF688) (.1), Protein of unknown function (DUF688) (.2), Protein of unknown function (DUF688) (.3) Lus10033602 [exp] 177 / 1e-48 AT2G30990 169 / 5e-45 Protein of unknown function (DUF688) (.1), Protein of unknown function (DUF688) (.2), Protein of unknown function (DUF688) (.3) Lus10017644 [exp] 154 / 3e-40 AT2G30990 160 / 9e-42 Protein of unknown function (DUF688) (.1), Protein of unknown function (DUF688) (.2), Protein of unknown function (DUF688) (.3) Lus10007276 [exp] 47 / 2e-05 AT1G29240 167 / 5e-45 Protein of unknown function (DUF688) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G142800 [exp] 105 / 4e-24 AT2G30990 252 / 8e-75 Protein of unknown function (DUF688) (.1), Protein of unknown function (DUF688) (.2), Protein of unknown function (DUF688) (.3) Potri.011G067000 [exp] 53 / 4e-07 AT1G29240 156 / 2e-40 Protein of unknown function (DUF688) (.1) Potri.004G057800 [exp] 48 / 1e-05 AT1G29240 206 / 1e-57 Protein of unknown function (DUF688) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05097 [flax] [poplar] DUF688 Protein of unknown function (DUF688)
Representative CDS sequence Show only first row Show all	>Lus10029830 pacid=23159888 polypeptide=Lus10029830 locus=Lus10029830.g ID=Lus10029830.BGIv1.0 annot-version=v1.0 ATGGAAGAGAAGCAATTGGATTTCAGTCAGCCGATATTGTCAGTGAGGAGAGCTTCATCATCACCAGTAGTTGTCAAAGATTACAACAGGAAACCTGCAA ATGTAGCCAAACATCCCGTCTACAAACCTGATCAGCCTGAAGTGAAATTAGGCCAAGTCAGGGTTTCAGGAACAGTTCCTTTTATCTGGGAGAGACGCCC TGGAACACCCAAGAATGAATCTTCTTCTGCAGAACCTAATTCACCTGCTGTCCCAAGACTCCCCCCTGGGAGAAGAAGGCTGAATGCCAAATCCATTGCT TCAGAAGGATCGTTATCATCCCCAGCGAAAGCAGAAGAGAGATCCACTTATGATGATTCTGAGGAAGAGGAGGAGGTGAGATTTGTGGATGCACATGACA AACTTTCCAGGACCGAATCGAATGGACTTGATAATACAAGACCGAATAGGACACTCTCGAGTGATTTGAGGGGTAGAGAGTTCATGATGGGAAAACTTTT GCCCGCTGCAGAAGCCATGGCTTCTGAGACGACTCGATCTCAGCAGCATTCTCTGCGCTATCCTACCAAGAAACAGCCTGTTCTTAAAGAGCAAGCGAGA CAGTTCAAGGCATTTTCGAATAAAGGTGACATCTTTGCGTACTATGGTAATAACCCGGTAGTGGTGGATGATGATGATCACAGTGAACCTGATGAATCCT CTTCACTTAGACTCTGTGGGTTACTGCCACTTTGTGGGATTGGGAAGCAATCATCGAGTTACGAAAGCAAGCATTCGATGGATAGTTTTCGGATGAGGTG CTGTCCGGAGATGATTAATGTCAGTGGCTTATCTGCAAACAAGGGATGGACACATAATCATAATGGATCAAAATCACCCCAAGTACCATTTGCTCGTAAA GGGGAAGGCTTTCTTGGAATTCCTGAAAGGTATAACAGGAATTTGGAGACAGTGGGTTCTATTCTACGTGTTAAGGAAGATGACATCAGCAGTTTTGGTG AACTATTATTATCATCAGAGTCTTCAACTCCTGCTGTGGAGAAAATCCTGTACATGGATCCTGTGCATGATCAGGACAAGAAAGGTTTGACGACAACAGA AGAAGATGATTCGTTTAAGCACGAAAAGTTTCGATCTTTCGGTGCTTGTTATCTGTCATTTTCAGATGATGATGAAGAAGGTCAAGTAGACATGAACCAG TCAGGTGAAGAAAAACATTATAATCATGGAAGCTCAGCATGTCACCCACTTTCACTACCTTTACCGAAATCTCCATCGGAGTCGTGGCTGAAGAAGGCTT TGCCCACGGTTCCACCATCAAAGTCTCCCCTTGGCGTTGTAGTGTTTTCGAAATCATCCCCGGATGTTTGGAAAACGATTGTTAAAGCTTCCGATGGGAA GAACATGCACTTCGAGTTTTCTGAGGGGAATCTTAAACCGATTCCAGAAGCATAA
AA sequence Show only first row Show all	>Lus10029830 pacid=23159888 polypeptide=Lus10029830 locus=Lus10029830.g ID=Lus10029830.BGIv1.0 annot-version=v1.0 MEEKQLDFSQPILSVRRASSSPVVVKDYNRKPANVAKHPVYKPDQPEVKLGQVRVSGTVPFIWERRPGTPKNESSSAEPNSPAVPRLPPGRRRLNAKSIA SEGSLSSPAKAEERSTYDDSEEEEEVRFVDAHDKLSRTESNGLDNTRPNRTLSSDLRGREFMMGKLLPAAEAMASETTRSQQHSLRYPTKKQPVLKEQAR QFKAFSNKGDIFAYYGNNPVVVDDDDHSEPDESSSLRLCGLLPLCGIGKQSSSYESKHSMDSFRMRCCPEMINVSGLSANKGWTHNHNGSKSPQVPFARK GEGFLGIPERYNRNLETVGSILRVKEDDISSFGELLLSSESSTPAVEKILYMDPVHDQDKKGLTTTEEDDSFKHEKFRSFGACYLSFSDDDEEGQVDMNQ SGEEKHYNHGSSACHPLSLPLPKSPSESWLKKALPTVPPSKSPLGVVVFSKSSPDVWKTIVKASDGKNMHFEFSEGNLKPIPEA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30990			Protein of unknown function (D...		Lus10029830 [exp]	0	1
AT5G66900			Disease resistance protein (CC...		Lus10007359 [exp]	1.0	0.9372
AT5G40100			Disease resistance protein (TI...		Lus10000329 [exp]	4.5	0.9321
AT5G36930			Disease resistance protein (TI...		Lus10008526 [exp]	6.3	0.9329
AT1G75260			oxidoreductases, acting on NAD...		Lus10001963 [exp]	6.5	0.9330
AT5G17770		CBR1, ATCBR	NADH:cytochrome B5 reductase 1...		Lus10033405 [exp]	7.5	0.9332
AT5G36930			Disease resistance protein (TI...		Lus10000331 [exp]	9.5	0.9308
AT4G27960		UBC9	ubiquitin conjugating enzyme 9...		Lus10005072 [exp]	10.2	0.9298
AT5G55050			GDSL-like Lipase/Acylhydrolase...		Lus10040065 [exp]	11.0	0.8901
AT1G75260			oxidoreductases, acting on NAD...		Lus10010832 [exp]	12.7	0.9319
AT2G16980			Major facilitator superfamily ...		Lus10025087 [exp]	15.7	0.8677

Compare expression of checked genes

Lus10029830 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.