Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029181 [exp] 225 / 4e-70 ND 39 / 0.008 Lus10010697 [exp] 197 / 6e-64 ND / Lus10042237 [exp] 152 / 1e-41 AT4G27595 44 / 5e-04 Plant protein of unknown function (DUF827) (.1) Lus10026417 [exp] 148 / 8e-41 ND / Lus10019691 [exp] 140 / 5e-38 ND / Lus10004306 [exp] 129 / 7e-35 ND / Lus10026416 [exp] 127 / 4e-34 AT5G52410 42 / 0.001 unknown protein Lus10004308 [exp] 125 / 2e-33 ND / Lus10019211 [exp] 124 / 1e-32 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029831 pacid=23159697 polypeptide=Lus10029831 locus=Lus10029831.g ID=Lus10029831.BGIv1.0 annot-version=v1.0 ATGGCTCCCTTCGATTTCAAGTCAGACATGCATTTCGTCGCATCATCCGACAAGCTCACCCTCCACGTCTACGAGCTCAACAAGACCGCAAGCGCGAACC CAAGTTCGATCCGGAAGGCTCATTGGTCGGAAGTCACCATCATCGTTCCCGGTCGCAACAACGATGATGATAACGATGGCGAGGAGGAGGCGAAGAAGTA CCACGACGGGCTCGTGTTCTTTGACAGGCACGGGGAGATCCAGGAACAGTCTGCGTTGACCAAGTTAGCGCAAGAACTCACTCGGCTGCGGCTAATGGTT AACCCAGAAGGGTACTGTTACCAAGATGTTAGGGAGCTCGGTGAACATAAGGATTTCGGGATTCATTACCTCGGACTCAATGATCGGCTCGATTGGTCCC GATATGGGGTTGACCTCGTCACCACCACCGTATTGTTGCGTTCGAGATTGAGGTACGTTATGCCAAAATCTGGCAAGCAACCATTTGGTCAGCCGCAACA GAAAGCCGGCGGCACAGGTGCGACGACGTCGTCAGTACAGAGTACGGAGAAGTTGGAGGTGCTGAAGACGGAGATAAAACAGAAAGAAAAGGAATCGGAA AAGCTCAGAAAGGAGAAAGACAAGGCTGAAAGGCTAAAGCAGGCTGCGGAGGACAAACTGCAAAAGTTGCAGGACGAAAAGGAGAGCGAAATCCAGGAGA TAAGGGACGAGAAGGATAAGGAATTGGTAAGCTTGAGGAAGCTGAAAGACGAGGAGCTGCGGAAATTGAAGAAAGACAAGGTTGCCTTGCAGAAAAGGGA GAAGGAGTTGCTGCAGAAGCTGAGTAGTTACCAAGAGAAGGGTGAATAA
AA sequence Show only first row Show all	>Lus10029831 pacid=23159697 polypeptide=Lus10029831 locus=Lus10029831.g ID=Lus10029831.BGIv1.0 annot-version=v1.0 MAPFDFKSDMHFVASSDKLTLHVYELNKTASANPSSIRKAHWSEVTIIVPGRNNDDDNDGEEEAKKYHDGLVFFDRHGEIQEQSALTKLAQELTRLRLMV NPEGYCYQDVRELGEHKDFGIHYLGLNDRLDWSRYGVDLVTTTVLLRSRLRYVMPKSGKQPFGQPQQKAGGTGATTSSVQSTEKLEVLKTEIKQKEKESE KLRKEKDKAERLKQAAEDKLQKLQDEKESEIQEIRDEKDKELVSLRKLKDEELRKLKKDKVALQKREKELLQKLSSYQEKGE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10029831 [exp]	0	1
AT1G31260		ZIP10	zinc transporter 10 precursor ...		Lus10040615 [exp]	4.9	0.8451
AT2G37430	C2H2ZnF	ZAT11	C2H2 and C2HC zinc fingers sup...		Lus10030330 [exp]	6.6	0.8630
AT1G08080		ATACA7, ACA7	A. THALIANA ALPHA CARBONIC ANH...		Lus10016104 [exp]	7.1	0.8279
AT2G18660		AtPNP-A, PNP-A,...	plant natriuretic peptide A (....		Lus10030078 [exp]	16.5	0.7911
AT5G18170		GDH1	glutamate dehydrogenase 1 (.1)		Lus10020288 [exp]	19.2	0.8485
AT3G26300		CYP71B34	"cytochrome P450, family 71, s...		Lus10017676 [exp]	22.4	0.7178
AT3G01190			Peroxidase superfamily protein...		Lus10007638 [exp]	24.5	0.7954
AT3G19920			unknown protein		Lus10017384 [exp]	25.8	0.7781
AT3G16150		ASPGB1	asparaginase B1, N-terminal nu...		Lus10024795 [exp]	28.7	0.8035
AT5G37450			Leucine-rich repeat protein ki...		Lus10002278 [exp]	29.9	0.8441

Compare expression of checked genes

Lus10029831 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.