Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G58640 1058 / 0 Mitogen activated protein kinase kinase kinase-related (.1.2) AT2G31010 1009 / 0 Protein kinase superfamily protein (.1.2) AT2G42640 679 / 0 Mitogen activated protein kinase kinase kinase-related (.1) AT5G11850 287 / 5e-84 Protein kinase superfamily protein (.1) AT1G73660 255 / 7e-72 protein tyrosine kinase family protein (.1) AT5G03730 247 / 4e-70 AtCTR1, SIS1, CTR1 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) AT1G18160 249 / 8e-70 Protein kinase superfamily protein (.1) AT1G08720 242 / 1e-67 EDR1, ATEDR1 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) AT4G24480 232 / 4e-64 Protein kinase superfamily protein (.1) AT5G49470 221 / 3e-63 PAS domain-containing protein tyrosine kinase family protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020708 [exp] 1328 / 0 AT3G58640 1020 / 0.0 Mitogen activated protein kinase kinase kinase-related (.1.2) Lus10017649 [exp] 1230 / 0 AT3G58640 1040 / 0.0 Mitogen activated protein kinase kinase kinase-related (.1.2) Lus10033608 [exp] 682 / 0 AT3G58640 1057 / 0.0 Mitogen activated protein kinase kinase kinase-related (.1.2) Lus10023865 [exp] 254 / 2e-72 AT5G03730 1041 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Lus10014368 [exp] 254 / 4e-72 AT5G03730 1030 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Lus10031341 [exp] 247 / 6e-70 AT1G73660 682 / 0.0 protein tyrosine kinase family protein (.1) Lus10027247 [exp] 249 / 1e-69 AT1G18160 987 / 0.0 Protein kinase superfamily protein (.1) Lus10009062 [exp] 242 / 2e-67 AT1G73660 673 / 0.0 protein tyrosine kinase family protein (.1) Lus10000937 [exp] 240 / 2e-67 AT1G08720 917 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G214400 [exp] 1211 / 0 AT3G58640 1197 / 0.0 Mitogen activated protein kinase kinase kinase-related (.1.2) Potri.014G142700 [exp] 1182 / 0 AT3G58640 1174 / 0.0 Mitogen activated protein kinase kinase kinase-related (.1.2) Potri.006G229400 [exp] 256 / 1e-72 AT5G11850 520 / 2e-170 Protein kinase superfamily protein (.1) Potri.016G095750 [exp] 253 / 7e-72 AT5G03730 970 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Potri.015G040100 [exp] 254 / 3e-71 AT1G73660 593 / 0.0 protein tyrosine kinase family protein (.1) Potri.018G053800 [exp] 252 / 3e-71 AT5G11850 517 / 2e-169 Protein kinase superfamily protein (.1) Potri.005G047600 [exp] 250 / 2e-70 AT1G08720 972 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) Potri.013G034800 [exp] 248 / 9e-70 AT1G08720 972 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) Potri.006G115800 [exp] 244 / 4e-69 AT5G03730 957 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Potri.012G048400 [exp] 244 / 4e-68 AT1G73660 1065 / 0.0 protein tyrosine kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10029833 pacid=23159710 polypeptide=Lus10029833 locus=Lus10029833.g ID=Lus10029833.BGIv1.0 annot-version=v1.0 ATGGAGCAGACACGAGATGATACAGGGCCAGCAGAGCAGGTGCCATCTAATGCAGCATGGTGGGGTTCAGATTTTGTCGAGAAGTTTGACTCTGTTTCGT TGCATTCTCAAGAAGATGCTTTGAGTAACAAAGACTCGCCTAGAAATTTTGAAGGAGACGGAGTGTCTTCACAGACTGCTTCACAGATTCTTTGGAGCAC GGGAATGCTATCTGAGCCAATACCTAATGGCTTTTACTCTGTCACACCTGATAAGAGACTGAGAGAGCATTTTGGGACCCTTCCGACGCTGGACGAACTT CATGCTCTTGGAAACGCCGCTCCACGGGCAGATGCAATTGTTGTAGATTTTAAAAAAGATAAAAAGCTATCAATGTTGAAACAGTTGATTGTGGCTCTTG TGAGAGGATTGAGTGCGAATCCAGCTGCTATGATAAAAAAGATTGCTGGGTTGGTGTCTGATGTTTACAAAAGACCTAGTGTTGACAGTCCGGTGAGAAC TTGTGTCGAGGAAACTTATCACATGCGTGATAGCCGAGGAGTTCAATTGCTTGGGCAAATCAAGCATGGCTCATGCCGCCCTCGGGCAATATTGTTCAAG GTTCTAGCAGATACTGTAGGTCTGGAAAGTAGGCTTGTGGTGGGTTTGCCAAATGATGGTTCTATCGATTGCGAGGACTCATATAAACACATGTCAGTTT TAGTAATCTTGAATTCGGTGGAACTACTGGTAGATCTTATGCGTTTTCCTGGTCAGCTGATACCCCGGTCTACCAGAGCAATTTACATGACTCATATATC ACCAGCAGGGGAGAGTGATTCTGCTGAAAATGATTCGTGTGATTCACCACTTGAACCAAACAGTCCTCTGTATGGGTTTCCAGAGAGATTAGACCCTGAC AGGCTAGCGCTCTTGAATGCCATTTTAACATTGAAATATTACTTCTACAATCTATTTGTTAATATGAATTGTTCTTCTAAAGTTGTGCATTTATCCCATA GTGAACCCAATATCGCTGCAACCTTTTGGCGACGCAGCCGGAAAAAGGTGATAGTCGATCAGCGGACTGCAAGTTCAAGTCCGGAGCATCCTTCGTTGCA GGTACATGGAAGGTCTGTGCTAAGCGGTGACAGACACTCGACTAAAGATTATTCTGAGGATTTAGCTTCCACAAGGTCAGAAGGAGCATCAACACCATCA CAACCTCGTAGATTAAGAAGAAGAAGCATTAGCATGACCCCAGAGATTGGTGATGATATTGTGAGGGCTGTACGTGCAATGAATGAAACTCTGAAGCAAA ACCGTGTAATGAGGGAGCGAGGAGATGGTACATCTTCGACAGTTAACTCTGATGAGAAGGACACCAACTCAGATCTCCTGAAACTTATAAACTACAAAAA CTCTCAGAAGGCAATGTCATTACCAACGTCTCCTCATGAGTATACTAGCCAAACACTGGAGAGAGGTAGACATTCAGGGTATTCCAGGAATGATGAATTG GTCACAACATGGAATAAAGTCCTTGAATCGCCCATGTTCCAGAACAAGCCGCTGTTGCCTTACGAAGAATGGAACATTGATTTCTCAGAAATAAGTGTGG GAACTCGGGTTGGAATCGGGTTCTTCGGTGAAGTTTTCCGTGGTGTATGGAACGGGACTGATGTTGCTATCAAAGTTTTCTTGGAGCAAGATCTGACAGC TGAAAACATGGAAGACTTCTGCAATGAAATAACCATTCTTAGTCGTCTTCGCCATCCTAACGGTATTCCTCTTTACCGATTGCTTCTTAAATTCTGTAGA GATAATAAAGATTATATGGACATTATGATTGTAGATGCTTTTGCTCACAGTAAGTTGATTCGTCCACTTCTTGCAGTTATATTGTTTTTGGGTGCCTGTA CAAAGCCTCCACGACTATCGATGCTCACTGAATACATGGAAATGGGATCCTTGTATTTCCTGATTCACTTGAGTGGTCAGAAGAAGAAGCTTATCTGGCG AAGGCGTCTTAAAATGCTGCGTGATATATGCAGGGGGTTGATGTGTATACACCGGATGAACATAGTGCATCGAGATCTGAAGAGCGCAAATTGTCTCGTG AACAAGCATTGGACTGTTAAGATCTGCGATTTCGGGCTGTCGAGAATAGTGGAGACCAGACCGGTAACAGACTTGTCGTCGGCAGGAACCCCTGAATGGA TGGCTCCCGAACTCATCCGTAGTGAACCCTTCACCGAGAAATGCGACATTTTCAGCCTCGGGGTGATCATGTGGGAGCTCTGCACTCTAAGTAGACCATG GGAAGGAATCCCGCCAGAAAGAGTTGTTTACGCTGTTGCTAACGAGGGATCTCGACTGGAAATCCCAGAAGGCCCTCTGGGCAGGCTAATCTCAGACTGC TGGGCGGAACCACATCAGCGTCCAAATTGTGAAGAAATCTTATCCCGTTTGGTTGATTGCGAGTACTCCCTTTGCTGA
AA sequence Show only first row Show all	>Lus10029833 pacid=23159710 polypeptide=Lus10029833 locus=Lus10029833.g ID=Lus10029833.BGIv1.0 annot-version=v1.0 MEQTRDDTGPAEQVPSNAAWWGSDFVEKFDSVSLHSQEDALSNKDSPRNFEGDGVSSQTASQILWSTGMLSEPIPNGFYSVTPDKRLREHFGTLPTLDEL HALGNAAPRADAIVVDFKKDKKLSMLKQLIVALVRGLSANPAAMIKKIAGLVSDVYKRPSVDSPVRTCVEETYHMRDSRGVQLLGQIKHGSCRPRAILFK VLADTVGLESRLVVGLPNDGSIDCEDSYKHMSVLVILNSVELLVDLMRFPGQLIPRSTRAIYMTHISPAGESDSAENDSCDSPLEPNSPLYGFPERLDPD RLALLNAILTLKYYFYNLFVNMNCSSKVVHLSHSEPNIAATFWRRSRKKVIVDQRTASSSPEHPSLQVHGRSVLSGDRHSTKDYSEDLASTRSEGASTPS QPRRLRRRSISMTPEIGDDIVRAVRAMNETLKQNRVMRERGDGTSSTVNSDEKDTNSDLLKLINYKNSQKAMSLPTSPHEYTSQTLERGRHSGYSRNDEL VTTWNKVLESPMFQNKPLLPYEEWNIDFSEISVGTRVGIGFFGEVFRGVWNGTDVAIKVFLEQDLTAENMEDFCNEITILSRLRHPNGIPLYRLLLKFCR DNKDYMDIMIVDAFAHSKLIRPLLAVILFLGACTKPPRLSMLTEYMEMGSLYFLIHLSGQKKKLIWRRRLKMLRDICRGLMCIHRMNIVHRDLKSANCLV NKHWTVKICDFGLSRIVETRPVTDLSSAGTPEWMAPELIRSEPFTEKCDIFSLGVIMWELCTLSRPWEGIPPERVVYAVANEGSRLEIPEGPLGRLISDC WAEPHQRPNCEEILSRLVDCEYSLC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G58640			Mitogen activated protein kina...		Lus10029833 [exp]	0	1
AT4G39050			Kinesin motor family protein (...		Lus10028790 [exp]	1.4	0.8961
AT2G46500		UBDKGAMMA4, ATP...	UBIQUITIN-LIKE DOMAIN KINASE G...		Lus10001817 [exp]	4.9	0.8741
AT1G45130		BGAL5	beta-galactosidase 5 (.1)		Lus10000803 [exp]	5.5	0.8452
AT1G70370		PG2	polygalacturonase 2 (.1.2)		Lus10029156 [exp]	8.9	0.8183
AT3G58640			Mitogen activated protein kina...		Lus10020708 [exp]	9.2	0.8589
AT1G03780		AtTPX2, TPX2	targeting protein for XKLP2 (....		Lus10039844 [exp]	9.8	0.8799
AT1G21460		SWEET1, AtSWEET...	Nodulin MtN3 family protein (....		Lus10018932 [exp]	11.6	0.8543
AT5G13750		ZIFL1	zinc induced facilitator-like ...		Lus10034794 [exp]	12.0	0.8024
AT3G52525	OFP	ATOFP6, OFP6	ARABIDOPSIS THALIANA OVATE FAM...		Lus10016978 [exp]	12.0	0.8368
AT2G27060			Leucine-rich repeat protein ki...		Lus10025541 [exp]	13.0	0.8531

Compare expression of checked genes

Lus10029833 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.