Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42620 806 / 0 PPS, PP2, ORE9, MAX2 PLEIOTROPIC PHOTOSIGNALING, ORESARA 9, MORE AXILLARY BRANCHES 2, RNI-like superfamily protein (.1) AT4G15475 59 / 1e-08 F-box/RNI-like superfamily protein (.1) AT5G27920 50 / 7e-06 F-box family protein (.1) AT2G25490 48 / 2e-05 FBL6, EBF1 EIN3-binding F box protein 1 (.1) AT5G23340 47 / 4e-05 RNI-like superfamily protein (.1) AT1G21410 43 / 0.0005 SKP2A F-box/RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020707 [exp] 1285 / 0 AT2G42620 845 / 0.0 PLEIOTROPIC PHOTOSIGNALING, ORESARA 9, MORE AXILLARY BRANCHES 2, RNI-like superfamily protein (.1) Lus10040230 [exp] 131 / 7e-36 AT2G42620 84 / 4e-20 PLEIOTROPIC PHOTOSIGNALING, ORESARA 9, MORE AXILLARY BRANCHES 2, RNI-like superfamily protein (.1) Lus10002715 [exp] 127 / 1e-34 AT2G42620 85 / 2e-20 PLEIOTROPIC PHOTOSIGNALING, ORESARA 9, MORE AXILLARY BRANCHES 2, RNI-like superfamily protein (.1) Lus10012764 [exp] 63 / 8e-10 AT4G15475 813 / 0.0 F-box/RNI-like superfamily protein (.1) Lus10040998 [exp] 50 / 3e-06 AT5G23340 595 / 0.0 RNI-like superfamily protein (.1) Lus10013444 [exp] 50 / 6e-06 AT5G23340 591 / 0.0 RNI-like superfamily protein (.1) Lus10029869 [exp] 47 / 4e-05 AT5G27920 441 / 5e-150 F-box family protein (.1) Lus10026472 [exp] 46 / 0.0001 AT4G33210 1225 / 0.0 SLOW MOTION, F-box family protein (.1) Lus10038067 [exp] 46 / 0.0001 AT4G33210 1215 / 0.0 SLOW MOTION, F-box family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G142600 [exp] 909 / 0 AT2G42620 854 / 0.0 PLEIOTROPIC PHOTOSIGNALING, ORESARA 9, MORE AXILLARY BRANCHES 2, RNI-like superfamily protein (.1) Potri.011G066700 [exp] 788 / 0 AT2G42620 717 / 0.0 PLEIOTROPIC PHOTOSIGNALING, ORESARA 9, MORE AXILLARY BRANCHES 2, RNI-like superfamily protein (.1) Potri.014G023500 [exp] 54 / 4e-07 AT1G47056 636 / 0.0 VIER F-box proteine 1 (.1) Potri.005G141800 [exp] 49 / 7e-06 AT5G67250 570 / 0.0 VIER F-BOX PROTEINE 4, SKP1/ASK1-interacting protein 2 (.1) Potri.019G123400 [exp] 49 / 9e-06 AT5G01720 604 / 0.0 RNI-like superfamily protein (.1) Potri.001G323100 [exp] 47 / 3e-05 AT3G26810 893 / 0.0 auxin signaling F-box 2 (.1) Potri.002G123100 [exp] 47 / 4e-05 AT1G47056 649 / 0.0 VIER F-box proteine 1 (.1) Potri.006G220900 [exp] 46 / 0.0001 AT4G33210 1183 / 0.0 SLOW MOTION, F-box family protein (.1) Potri.016G128400 [exp] 44 / 0.0003 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.006G081600 [exp] 44 / 0.0003 AT4G07400 286 / 3e-89 VIER F-box proteine 3 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029834 pacid=23159786 polypeptide=Lus10029834 locus=Lus10029834.g ID=Lus10029834.BGIv1.0 annot-version=v1.0 ATGACCATGACCGCCGCAGAATCCCCGGCGAAAACAATCAACGACCTCCCCGACGTCATCCTCTTCGAGATATGCGCCGCCGTCTCCGACACGCGAGCTC GCAACTCCCTCTCTCTCGTCAACAGCAAGTTCCACGCCCTCGAGCGCTCCACGCGCTACTCCCTCACGCTCCGGGGAAACGCGCGGGATCTCTTCCTCGT CCCGTCCTGCTTCCGATCGGTAACTCATCTTGACCTCTCTCTACTATCCCCCTGGGGCCACGCGCTACTCCTCTCATCTCCCTCATCCGACCCTCAACTA CTGGCCTCTCTCATCGCCGGAAACTTCCCCGCTGTCACTTCTCTCACTGTATACTCCCGATCTTCCCAAACCCTGGCCGTCCTCCTCCGCAACTGGCCGC GGCTGAGCCACGTCAAGTTGGTGCGGTGGCACCAGCGTCCTTCCTCCGGGGATGAAACCGACTTCGATCCTCTCTTCCAGCAATGTCGCGGACTACGGAG CTTGGATCTCTCGAATTTCTATTACTGGACCGAGGATCTCCCTCCGGTTCTCCAACGGCACCCGTTCGTGTCCAAATCCCTGACTCGGTTGAATCTCCTC ACGGTCTCGCTCAGCGACGGGTTTAAGGCGGAGGAGATCGTCGCAATCACTGCCGCCTGCGGCAATCTGACGGAGTTTCTCGTCGCCTGTATGTTCGATC ATAGTTACATTGGATTCATCGGAGACGAAACTCTACAAGCAATCGCCTCCAACTGCCCGAAGCTATCCGTTCTGCATCTCGTCGATACGTCCTCGTTGCT TACTACGAGAGCGATTCCCTCCGAAGACGGCTACACGACGGAGGACGCGGGAGTAACTGTAGTAGGTCTGATTGATTTCTTCTCCAGACTTCCGCTTCTA GAGGAGCTCGTTCTCGACGTCTGTAAGAACATAAGGAACAGTTCCACGGCGTTAGAAGCTCTGAATTCAAAATGCCCCAAGTTGAAAGTTCTGAAGTTAG GCTATTTCCATGGAGTCTGTTTGGCTGTGGAGTCTCGGCTGGATGGATTAGCTTTGTGTTCACGGCTGGAGTCGTTATCGATTAAGAACTCAGCTGATTT GACTGACATGGTACTGATAGAGATTGCCAGAGGATGCTACAGGCTATCGAAATTCGAGATCGAAGGTTGCAATAACATCACAGTGCACGGAATGCGAACA TTCGCTTGTTTGCTTCGCCCGACTCTGATCGAGGTGAAGATCTCTGCTTGCAAGAACCTCGATGCTGTTTCATCCCTGCGTGCTCTCGAGCCGGTTCAAG ATCGAATCGAGAGGTTACATATAGACTGTGTTTGGGATGGGTTGCAGGATTCAGGTCTGGGGTTTGATCTGAATGAGGGGTTTGATCTGAATGAGGATTA TTACGCTAGCAAGAAGAAGAAATGCAAGTATTCCGATTCCGACTCGTCACTGTGTTCTTCGTCCTACTATTCCAGCAACGGGAATGGATACTGCAGCAGG ACATGGAAGAGGCTCAAGTGTCTATCTTTATGGATCGCGATCGGTGAGCTCTTAACTCCACTAACAAGTGCCGGTCTTGAGGATTGTCCAAACTTGGAAG AGATCCGGATAAAGATCGAAGGGGACTGCAGGGCTCGGCCGAAACCCGCACAGCGAGCATTCGGGTTGAACATTCTCACTCAGTATCCGGAGCTGTGGAA GATGAAGCTGGACTGTAGCGACACGATCGGGTATGCTCTAACCGCACCCTCCGGGTTGATGGATCTGAGCTTGTGGGAGAGGCACTTCTTGAACGATATA GGGAGTTTGAGCATTGTGGAGCTTGACTACTGGCCGCCACAGGATCAAGATGTGAACCAGAGGAGCCTTTCGCTCCCCGCGGTTGGGTTGCTTGCAGAAT CGCTGAGCTTGAGGAAGCTGTTCATCCACGGGACTGCGCACGAGCATTTCATGAGGTTCTTGCTTAAGATTCCGAGCCTGAGGGACGTCCAGCTGAGGGA AGATTATTATCCGGCACCGGAGAATGATATGAGCACGGAGATGAGAGTTGATTCGTGCAGCCGGTTTGAGGATGCTCTGAATGGAAGAGAGATCCCTGAT TGA
AA sequence Show only first row Show all	>Lus10029834 pacid=23159786 polypeptide=Lus10029834 locus=Lus10029834.g ID=Lus10029834.BGIv1.0 annot-version=v1.0 MTMTAAESPAKTINDLPDVILFEICAAVSDTRARNSLSLVNSKFHALERSTRYSLTLRGNARDLFLVPSCFRSVTHLDLSLLSPWGHALLLSSPSSDPQL LASLIAGNFPAVTSLTVYSRSSQTLAVLLRNWPRLSHVKLVRWHQRPSSGDETDFDPLFQQCRGLRSLDLSNFYYWTEDLPPVLQRHPFVSKSLTRLNLL TVSLSDGFKAEEIVAITAACGNLTEFLVACMFDHSYIGFIGDETLQAIASNCPKLSVLHLVDTSSLLTTRAIPSEDGYTTEDAGVTVVGLIDFFSRLPLL EELVLDVCKNIRNSSTALEALNSKCPKLKVLKLGYFHGVCLAVESRLDGLALCSRLESLSIKNSADLTDMVLIEIARGCYRLSKFEIEGCNNITVHGMRT FACLLRPTLIEVKISACKNLDAVSSLRALEPVQDRIERLHIDCVWDGLQDSGLGFDLNEGFDLNEDYYASKKKKCKYSDSDSSLCSSSYYSSNGNGYCSR TWKRLKCLSLWIAIGELLTPLTSAGLEDCPNLEEIRIKIEGDCRARPKPAQRAFGLNILTQYPELWKMKLDCSDTIGYALTAPSGLMDLSLWERHFLNDI GSLSIVELDYWPPQDQDVNQRSLSLPAVGLLAESLSLRKLFIHGTAHEHFMRFLLKIPSLRDVQLREDYYPAPENDMSTEMRVDSCSRFEDALNGREIPD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G42620		PPS, PP2, ORE9,...	PLEIOTROPIC PHOTOSIGNALING, OR...		Lus10029834 [exp]	0	1
AT5G23050		AAE17	acyl-activating enzyme 17 (.1)		Lus10027257 [exp]	1.7	0.8121
AT2G19810	C3HZnF	AtOZF1	Oxidation-related Zinc Finger ...		Lus10012922 [exp]	2.4	0.7858
AT1G02290			unknown protein		Lus10028606 [exp]	7.5	0.7682
AT1G63850			BTB/POZ domain-containing prot...		Lus10023573 [exp]	7.7	0.7613
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10015109 [exp]	9.2	0.7586
AT3G22270			Topoisomerase II-associated pr...		Lus10012099 [exp]	9.4	0.7464
AT5G59830			unknown protein		Lus10040857 [exp]	12.4	0.7069
AT1G10150		ATPP2-A10	Carbohydrate-binding protein (...		Lus10012487 [exp]	14.5	0.7585
AT1G08570		ACHT4	atypical CYS HIS rich thiored...		Lus10002640 [exp]	15.2	0.7633
AT4G28910		NINJA	novel interactor of JAZ (.1.2....		Lus10011116 [exp]	16.0	0.7054

Compare expression of checked genes

Lus10029834 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.