Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42590 417 / 1e-148 GENERALREGULATORYFACTOR9, GF14MU, GRF9 general regulatory factor 9 (.1.2.3) AT1G34760 394 / 6e-140 RHS5, GF14OMICRON, GRF11 ROOT HAIR SPECIFIC 5, general regulatory factor 11 (.1.2) AT1G26480 391 / 2e-138 GF14IOTA, GRF12 general regulatory factor 12 (.1) AT1G22300 370 / 2e-130 14-3-3EPSILON, GF14EPSILON, GRF10 14-3-3 PROTEIN G-BOX FACTOR14 EPSILON, general regulatory factor 10 (.1.2.3) AT4G09000 357 / 4e-125 GF14CHI, GRF1 GENERAL REGULATORY FACTOR1-G-BOX FACTOR 14-3-3 HOMOLOG ISOFORM CHI, general regulatory factor 1 (.1.2) AT1G78300 357 / 6e-125 14-3-3OMEGA, GF14OMEGA, GRF2 14-3-3 PROTEIN G-BOX FACTOR14 OMEGA, general regulatory factor 2 (.1) AT5G38480 347 / 2e-121 RCI1, GRF3 general regulatory factor 3 (.1.2) AT3G02520 347 / 3e-121 GENERALREGULATORYFACTOR7, GF14NU, GRF7 general regulatory factor 7 (.1) AT1G35160 347 / 7e-121 14-3-3PHI, GF14PHI, GRF4 ,GF14 PHI GENERAL REGULATORY FACTOR 4, 14-3-3 PROTEIN G-BOX FACTOR14 PHI, GF14 protein phi chain (.1.2) AT5G65430 344 / 5e-120 14-3-3KAPPA, GF14KAPPA, GRF8 14-3-3 PROTEIN G-BOX FACTOR14 KAPPA, general regulatory factor 8 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020705 [exp] 495 / 4e-179 AT2G42590 399 / 2e-141 general regulatory factor 9 (.1.2.3) Lus10017650 [exp] 482 / 1e-174 AT2G42590 420 / 5e-150 general regulatory factor 9 (.1.2.3) Lus10033609 [exp] 488 / 9e-174 AT2G42590 410 / 9e-144 general regulatory factor 9 (.1.2.3) Lus10001894 [exp] 406 / 2e-144 AT2G42590 405 / 1e-144 general regulatory factor 9 (.1.2.3) Lus10013908 [exp] 397 / 2e-138 AT2G42590 400 / 1e-139 general regulatory factor 9 (.1.2.3) Lus10036896 [exp] 387 / 1e-136 AT1G26480 462 / 5e-167 general regulatory factor 12 (.1) Lus10026660 [exp] 377 / 1e-132 AT1G26480 457 / 7e-165 general regulatory factor 12 (.1) Lus10036471 [exp] 375 / 3e-132 AT1G26480 406 / 7e-145 general regulatory factor 12 (.1) Lus10004652 [exp] 375 / 4e-132 AT1G26480 457 / 4e-165 general regulatory factor 12 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G110900 [exp] 434 / 2e-155 AT2G42590 424 / 4e-152 general regulatory factor 9 (.1.2.3) Potri.001G392200 [exp] 425 / 6e-152 AT2G42590 428 / 2e-153 general regulatory factor 9 (.1.2.3) Potri.005G164500 [exp] 403 / 3e-143 AT1G34760 417 / 3e-149 ROOT HAIR SPECIFIC 5, general regulatory factor 11 (.1.2) Potri.002G097500 [exp] 402 / 5e-143 AT1G26480 419 / 4e-150 general regulatory factor 12 (.1) Potri.008G095000 [exp] 391 / 1e-138 AT1G26480 440 / 3e-158 general regulatory factor 12 (.1) Potri.010G159300 [exp] 383 / 2e-135 AT1G26480 466 / 2e-168 general regulatory factor 12 (.1) Potri.004G101700 [exp] 354 / 4e-124 AT3G02520 472 / 5e-171 general regulatory factor 7 (.1) Potri.002G099800 [exp] 350 / 2e-122 AT1G78300 473 / 3e-171 14-3-3 PROTEIN G-BOX FACTOR14 OMEGA, general regulatory factor 2 (.1) Potri.005G162400 [exp] 349 / 5e-122 AT1G78300 475 / 2e-172 14-3-3 PROTEIN G-BOX FACTOR14 OMEGA, general regulatory factor 2 (.1) Potri.017G113300 [exp] 347 / 3e-121 AT3G02520 468 / 2e-169 general regulatory factor 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00244 [flax] [poplar] 14-3-3 14-3-3 protein
Representative CDS sequence Show only first row Show all	>Lus10029835 pacid=23159843 polypeptide=Lus10029835 locus=Lus10029835.g ID=Lus10029835.BGIv1.0 annot-version=v1.0 ATGGCTGAAAGGGACAAGTTCATCTACACTGCCAAGCTCGCCGAGCAGGCTGAGCGCTATGACGAGATGGTGGAAGCGATGAAGAATGTTGCCAAGTGTG GCGTGGAGTTGACTGTCGAAGAGAGGAACCTGCTGTCCGTCGGCTACAAGAATGTGATCGGGGCAAAGCGAGCTTCGTGGAGGATTCTGTCCTCCATTGA GCAGAAGGAAGAGAGTAGGGGAAATGAAGTGAACGCTAAGCGGATCAAGGAATACAGGCACAAGGTTGAAACTGAGCTGACTGATATTTGCAACGATGTA ATGGTTGTGATCGATGAGCATCTCATTCCTGCTGCTCCTACTGGAGAGTCGGCCATCTTCTACTACAAGATGAAGGGAGATTATTACCGGTATCTTGCTG AGTTCAAGAGTGGTAACGAGAAGAAGGAAGCTGGTGATAATTCAATGAAAGCATATGAGAAAGCTACTAGTTTGGCAGAGGCTGATTTGGCTCCCACGCA CCCAATTAGATTGGGCTTAGCACTGAATTTCTCAGTCTTCTATTATGAGATACTGAATTCACCTGAAAGGGCCTGCCACCTTGCGAAACAGGCTTTCGAT GAAGCTATCTCGGAACTCGACTCTCTGAACGAGGATTCGTACAAGGACAGCACTTTGATTATGCAGCTGCTCAGGGACAACTTAACCTTGTGGACTTCTG ACATACCCGAGGATGGAGAAGATGCCCAGAAGATCAATGGCACTGCCAAAGGCATGGGAGCCGAAGATGAAGAGCTCAAATCATCAAGCCTCGACAATTT GCCAAGGAATTCATTCAAAATTGAGCATATGTTCAGAACATCTGGTGTGTTTGCAGCTTGA
AA sequence Show only first row Show all	>Lus10029835 pacid=23159843 polypeptide=Lus10029835 locus=Lus10029835.g ID=Lus10029835.BGIv1.0 annot-version=v1.0 MAERDKFIYTAKLAEQAERYDEMVEAMKNVAKCGVELTVEERNLLSVGYKNVIGAKRASWRILSSIEQKEESRGNEVNAKRIKEYRHKVETELTDICNDV MVVIDEHLIPAAPTGESAIFYYKMKGDYYRYLAEFKSGNEKKEAGDNSMKAYEKATSLAEADLAPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFD EAISELDSLNEDSYKDSTLIMQLLRDNLTLWTSDIPEDGEDAQKINGTAKGMGAEDEELKSSSLDNLPRNSFKIEHMFRTSGVFAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G42590		GENERALREGULATO...	general regulatory factor 9 (....		Lus10029835 [exp]	0	1
AT4G00170			Plant VAMP (vesicle-associated...		Lus10036495 [exp]	1.4	0.8728
AT5G10290			leucine-rich repeat transmembr...		Lus10000629 [exp]	2.8	0.8700
AT2G25310			Protein of unknown function (D...		Lus10001955 [exp]	9.0	0.8692
AT1G24450		NFD2	NUCLEAR FUSION DEFECTIVE 2, Ri...		Lus10002362 [exp]	9.8	0.8678
AT5G58030			Transport protein particle (TR...		Lus10003350 [exp]	10.7	0.8630
AT5G13160		PBS1	avrPphB susceptible 1, Protein...		Lus10015756 [exp]	12.5	0.8472
AT1G12230			Aldolase superfamily protein (...		Lus10024606 [exp]	13.0	0.8613
AT5G51510			unknown protein		Lus10027200 [exp]	16.4	0.8544
AT5G19990		ATSUG1, RPT6A	regulatory particle triple-A A...		Lus10033055 [exp]	17.3	0.8412
AT1G19360		RRA3	reduced residual arabinose 3, ...		Lus10032710 [exp]	20.4	0.8438

Compare expression of checked genes

Lus10029835 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.