Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31040 444 / 5e-157 ATP synthase protein I -related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020702 [exp] 601 / 0 AT2G31040 462 / 3e-164 ATP synthase protein I -related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G142200 [exp] 454 / 4e-161 AT2G31040 463 / 1e-164 ATP synthase protein I -related (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029836 pacid=23159662 polypeptide=Lus10029836 locus=Lus10029836.g ID=Lus10029836.BGIv1.0 annot-version=v1.0 ATGCCGATCCTTAATTACTTCTCTGTCACTTCATCGGCCACCCCTATATCCCCAGACTCATCACCACAGTCCCCAAACCCCAATAACCAACGGCTTCCAA CCAAGATCATCCTCCCCAGCAAGAACCCCACCAAATGGTCTACCGGCGTAGCTCCCGGAGACTACGGCGGGCCCCCTGTCTCCACCAAGCTCCGCCGCTA CTGGGGCGGCGAAGGCGAAGACCCTTTAACCTCCGACGACTTCATCTGGAACAAAGACTTCATGCCTCGCATGAAGCGCCTCTTTCAGGATCCCGAAGAT GCAGCTAAATCCGCCGCTCCTAATGAGGATGAGTCATCTGGGTTCTTAAGCTTACACAGAGTAATGAGTTTGGACAGTATGGATATTGATCTGAGCAAAG AGCTAACAGCACCTTCGAAGCGCATTGTACAACAGCCAGCTGAGACCGTTACTAAGGTTGCCAAGAGCACGTCACCGAAATGGAAGTTTGCGCCGACACA GCGCGAGCAGGATAAGTGGGATAGAGCAACTAAGGCTGCAACTGGTGGTAGTGAAGCCATGTTTCGTGAGTTGAGGAAGCCGAAGGGGGATCCAGCAGTA CTGGCTGCAGAGTCCAGGGAGCAGTACTACAAGTTGAAGAACAAGTTACAACTTCTCACTGTGGGCATTGGTAGTGTTGGCTTGGTCTCAGCGTATGTCT CTTATTCCACAGAAATCACAGCTAGCTTTGGTGTTGGATTCATCGGATCGCTGGTTTACATGCGTATGTTGGGGAAGAGTATAGATTCCATGGCTGATGG AGCAGGGGGGCTTCTCAAGGGAGCAATAGGACAACCCAGGTTGCTCGTTCCAGTTGCCTTGGTCATGATCTTTAACCGGTGGAATTCGATTATTGTCCCC GAATATGGATTTGTACACTTGGAATTGATACCAATGCTGGTAGGATTCTTCACATATAAGATTGCTACTTTTGCTCAAGCTATAGAGGAAGCGCTTAAAG TGCCTGCTGGAAACTCTGATGCTTGA
AA sequence Show only first row Show all	>Lus10029836 pacid=23159662 polypeptide=Lus10029836 locus=Lus10029836.g ID=Lus10029836.BGIv1.0 annot-version=v1.0 MPILNYFSVTSSATPISPDSSPQSPNPNNQRLPTKIILPSKNPTKWSTGVAPGDYGGPPVSTKLRRYWGGEGEDPLTSDDFIWNKDFMPRMKRLFQDPED AAKSAAPNEDESSGFLSLHRVMSLDSMDIDLSKELTAPSKRIVQQPAETVTKVAKSTSPKWKFAPTQREQDKWDRATKAATGGSEAMFRELRKPKGDPAV LAAESREQYYKLKNKLQLLTVGIGSVGLVSAYVSYSTEITASFGVGFIGSLVYMRMLGKSIDSMADGAGGLLKGAIGQPRLLVPVALVMIFNRWNSIIVP EYGFVHLELIPMLVGFFTYKIATFAQAIEEALKVPAGNSDA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G31040			ATP synthase protein I -relate...		Lus10029836 [exp]	0	1
AT5G23240			DNAJ heat shock N-terminal dom...		Lus10040990 [exp]	1.0	0.9421
AT2G31040			ATP synthase protein I -relate...		Lus10020702 [exp]	3.5	0.8923
AT2G01590		CRR3	chlororespiratory reduction 3 ...		Lus10027792 [exp]	3.5	0.9088
AT3G52180		ATSEX4, SEX4, A...	STARCH-EXCESS 4, DUAL-SPECIFIC...		Lus10037924 [exp]	4.0	0.9049
AT5G55710		AtTic20-V	translocon at the inner envelo...		Lus10031203 [exp]	4.2	0.8690
AT4G04330		AtRbcX1	homologue of cyanobacterial Rb...		Lus10011972 [exp]	4.9	0.9079
AT5G55710		AtTic20-V	translocon at the inner envelo...		Lus10031781 [exp]	5.7	0.8523
AT4G13250		NYC1, NYC	NON-YELLOW COLORING 1, NAD(P)-...		Lus10023644 [exp]	6.2	0.8613
AT5G60860		AtRABA1f	RAB GTPase homolog A1F (.1)		Lus10025432 [exp]	6.3	0.8302
AT5G65550			UDP-Glycosyltransferase superf...		Lus10042241 [exp]	6.8	0.8463

Compare expression of checked genes

Lus10029836 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.