Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42600 1692 / 0 ATPPC2 phosphoenolpyruvate carboxylase 2 (.1.2) AT1G53310 1689 / 0 ATPEPC1, ATPPC1 PEP\(PHOSPHOENOLPYRUVATE\) CARBOXYLASE 1, phosphoenolpyruvate carboxylase 1 (.1.2.3) AT3G14940 1682 / 0 ATPPC3 phosphoenolpyruvate carboxylase 3 (.1) AT1G68750 517 / 2e-167 ATPPC4 phosphoenolpyruvate carboxylase 4 (.1) AT3G42628 74 / 2e-16 phosphoenolpyruvate carboxylase-related / PEP carboxylase-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020701 [exp] 1934 / 0 AT1G53310 1714 / 0.0 PEP\(PHOSPHOENOLPYRUVATE\) CARBOXYLASE 1, phosphoenolpyruvate carboxylase 1 (.1.2.3) Lus10033610 [exp] 1852 / 0 AT1G53310 1722 / 0.0 PEP\(PHOSPHOENOLPYRUVATE\) CARBOXYLASE 1, phosphoenolpyruvate carboxylase 1 (.1.2.3) Lus10017653 [exp] 1851 / 0 AT1G53310 1725 / 0.0 PEP\(PHOSPHOENOLPYRUVATE\) CARBOXYLASE 1, phosphoenolpyruvate carboxylase 1 (.1.2.3) Lus10035050 [exp] 523 / 3e-169 AT1G68750 1560 / 0.0 phosphoenolpyruvate carboxylase 4 (.1) Lus10017886 [exp] 520 / 2e-168 AT1G68750 1566 / 0.0 phosphoenolpyruvate carboxylase 4 (.1) Lus10000065 [exp] 386 / 2e-128 AT3G14940 364 / 9e-121 phosphoenolpyruvate carboxylase 3 (.1) Lus10017651 [exp] 303 / 3e-97 AT1G53310 273 / 8e-87 PEP\(PHOSPHOENOLPYRUVATE\) CARBOXYLASE 1, phosphoenolpyruvate carboxylase 1 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G214100 [exp] 1731 / 0 AT1G53310 1699 / 0.0 PEP\(PHOSPHOENOLPYRUVATE\) CARBOXYLASE 1, phosphoenolpyruvate carboxylase 1 (.1.2.3) Potri.001G391900 [exp] 1728 / 0 AT3G14940 1776 / 0.0 phosphoenolpyruvate carboxylase 3 (.1) Potri.011G110700 [exp] 1720 / 0 AT3G14940 1766 / 0.0 phosphoenolpyruvate carboxylase 3 (.1) Potri.010G131800 [exp] 511 / 6e-165 AT1G68750 1536 / 0.0 phosphoenolpyruvate carboxylase 4 (.1) Potri.008G114200 [exp] 510 / 1e-164 AT1G68750 1514 / 0.0 phosphoenolpyruvate carboxylase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0151 [flax] [poplar] PK_TIM PF00311 [flax] [poplar] PEPcase Phosphoenolpyruvate carboxylase
Representative CDS sequence Show only first row Show all	>Lus10029837 pacid=23159735 polypeptide=Lus10029837 locus=Lus10029837.g ID=Lus10029837.BGIv1.0 annot-version=v1.0 ATGGCGGCACCTTTGCCTAACCGGAACTTGGAGAAGGCGACCTCCATTGATGCGCAGTTGAGGCTGTTGGCTCCCAGGAAGGTCTCCGAGGACGATAAGT TGGTCGAGTATGATGCTCTTTTGCTTGATCGCTTCCTTGACATCCTGCACGATCTGCACGGCGAGGAAATCCGTGAAACGGTCCAGGAATGTTATGAGCT TTCCGCTGAGTATGAGAGGAAGCGCAATCCTGAGAAATTGGAGGAGCTTGGAAAAGTGATCACGAGTTTGGATCCCGGGGATTCGATTGTTATCTCGAAA TCGTTCTCCAACATGCTTACCTTGGCCAACTTGGCTGAGGAGGTTCAGATCGCTTACAGGAGAAGAATCAAGTTGAAGAAGGGAGACTTTGCTGATGAGA ACTCGGCAACAACCGAATCTGACATTGAGGAGACGTTCAAGAAGCTGACATCTCAGCTGAAGAAGTCCCCTGAGGAAGTTTTTGATGCTTTGAAGAACCA GACTGTGGACTTGGTCTTCACCGCCCATCCCACTCAATCAGTTCGAAGATCCTTGCTTCAGAAGCATGGAAGGATCCGTGACTGCTTGACTCAACTGTAT GCGAAGGACATTACTCCTGATGACAAGCAGGAGCTTGATGAGGCTTTGCAGAGAGAGATCCAAGCTGCTTTCCGGACTGACGAAATTCGAAGGACTCCTC CTACTCCACAAGATGAGATGAGAGCAGGAATGAGCTACTTTCACGAGACAATCTGGAAAGGTGTTCCCAAGTTCTTGCGTCGTGTTGACACTGCATTGAA GAACTTGGGGATTAATGAACGTGTTCCCTACAATGCCCCTCTCATTCAGTTCTCTTCATGGATGGGTGGTGATCGTGATGGAAATCCTCGTGTGACTCCT GAAGTTACCAGGGATGTGTGCCTGCTGGCTAGAATGATGGCTGCAAACTTGTATTTCTCACAGATTGAGGATCTCATGTTTGAGCTGTCCATGTGGCGTT GCAATGAAGAGCTTCGCGTTCGTGCTGAGGAACTTCACAGGAATTCAAGGAGGGATGCAAAACACTTCATAGAATTCTGGAAGCAGATCCCTGCTAATGA GCCCTACCGAGTGCTTCTTGGCTACGTGAGGGACAAGCTTTACAATACTCGTGAACGTTCGAGGCAACTATTGGCCAGCGGGATGTCTGACCTTCCTGAA GAATCTACTTTTACCAATGTTGAGCAGTTCCTGGAGCCTCTTGAACTCTGCTACAGATCCCTTTGTGCTTGTGGTGATCGCCCAATTGCCGATGGAAGCC TTCTTGATTTCTTACGCCAAGTCTCGACCTTTGGCCTTTCACTAGTAAGGCTAGACATTCGACAAGAATCCGACAGGCACACTGACGTGCTTGATGCCAT CACAAACCACTTGGGGATTGGATCTTATCGTGAATGGTCTGAGGACAAAAGACAAGAGTGGCTCCTTTCTGAACTCCGTGGAAAGCGTCCTCTTTTCGGT CCCGATCTTCCCAAAACCGAAGAGATTGCTGATGTATTGGACACGCTACATGTCATCGCTGAACTTCCGGCCGACAACTTCGGTGCCTACATTATATCCA TGGCCACAGCTCCGTCCGATGTTCTTGCTGTCGAGCTTTTGCAGCGAGAGTGCCATGTCAAACAACCACTGAGGGTTGTCCCATTGTTCGAGAAGCTTGC TGATCTCGAAGCCGCTCCTGCTGCTGTGGCCCGTCTCTTCTCAATCGACTGGTACAAGGACCGTATCAACGGGAAGCAAGAAGTTATGATTGGGTACTCC GACTCAGGCAAGGATGCTGGACGTTTCTCTGCTGCTTGGCAGCTATACAAGGCTCAAGAAGAGCTTGTTAAGGTGTCGAAGCAATATGGCGTTAAACTCA CAATGTTCCATGGCAGAGGAGGCACAGTCGGAAGAGGAGGAGGCCCCACCCATCTTGCTATATTGTCTCAGCCACCGGAAACCATTAATGGTTCACTTCG TGTCACGGTCCAGGGTGAGGTTATTGAGCAGTCCTTTGGAGAGGAACACTTGTGCTTCAGGACTCTCCAGCGTTTTACAGCTGCCACACTTGAACACGGA ATGCATCCTCCGGTCTCCCCGAAACCGGAATGGCGTGCACTGATGGATCAAATGGCTGTTTTATCAACGGAAGAGTACCGCTCCATCGTCTTCCAGGAAC CTCGTTTTGTCGAGTATTTCCGATTGGCAACACCAGAGATGGAGTATGGCCGTATGAACATTGGAAGCCGACCGTCCAAGAGGAAGCCAAGTGGAGGCAT CGAATCCCTCCGTGCAATTCCGTGGATTTTCGCATGGACTCAGACTAGGTTTCACTTACCCGTCTGGCTCGGGTTCGGAGCTGCTTTCAAGCATGTCATT GACAAGGATATCAAGAACCTCAAAATGCTCCAGGACATGTACAATCAGTGGCCATTCTTCAGGGTCACAATCGACTTGGTCGAAATGGTTTTCGCCAAGG GTGACCCCGCGATTGCTGCTATGTATGACAAGCTCCTTGTCGTGCCCGAATTGCAACCGTTTGGTGACCAGTTGAGATCCAAGTACCTCCAAACCAAGGA CTTCCTCCTCCAGATTGCTGGACACAAAGAAGTCCTGGAAGCAGACCCCTACCTGAAGCAGAGGCTTCGCCTGCGCGACGCATACATCACAACCCTTAAC GTCTCCCAGGCCTACACACTGAAGCGAATCCGCGATCCTGAGTACCGCGTCACCCTGAGGCCCCACCTGTCTAAAGAATACAGCGACATGACAACCAAGC CAGCAGCCGAGCTAGTGAAGCTCAACCCGACAAGCGAGTATGCTCCTGGGCTGGAAGACACCATCATTTTGACGATGAAGGGTATCGCGGCCGGGCTTCA GAACACTGGTTAA
AA sequence Show only first row Show all	>Lus10029837 pacid=23159735 polypeptide=Lus10029837 locus=Lus10029837.g ID=Lus10029837.BGIv1.0 annot-version=v1.0 MAAPLPNRNLEKATSIDAQLRLLAPRKVSEDDKLVEYDALLLDRFLDILHDLHGEEIRETVQECYELSAEYERKRNPEKLEELGKVITSLDPGDSIVISK SFSNMLTLANLAEEVQIAYRRRIKLKKGDFADENSATTESDIEETFKKLTSQLKKSPEEVFDALKNQTVDLVFTAHPTQSVRRSLLQKHGRIRDCLTQLY AKDITPDDKQELDEALQREIQAAFRTDEIRRTPPTPQDEMRAGMSYFHETIWKGVPKFLRRVDTALKNLGINERVPYNAPLIQFSSWMGGDRDGNPRVTP EVTRDVCLLARMMAANLYFSQIEDLMFELSMWRCNEELRVRAEELHRNSRRDAKHFIEFWKQIPANEPYRVLLGYVRDKLYNTRERSRQLLASGMSDLPE ESTFTNVEQFLEPLELCYRSLCACGDRPIADGSLLDFLRQVSTFGLSLVRLDIRQESDRHTDVLDAITNHLGIGSYREWSEDKRQEWLLSELRGKRPLFG PDLPKTEEIADVLDTLHVIAELPADNFGAYIISMATAPSDVLAVELLQRECHVKQPLRVVPLFEKLADLEAAPAAVARLFSIDWYKDRINGKQEVMIGYS DSGKDAGRFSAAWQLYKAQEELVKVSKQYGVKLTMFHGRGGTVGRGGGPTHLAILSQPPETINGSLRVTVQGEVIEQSFGEEHLCFRTLQRFTAATLEHG MHPPVSPKPEWRALMDQMAVLSTEEYRSIVFQEPRFVEYFRLATPEMEYGRMNIGSRPSKRKPSGGIESLRAIPWIFAWTQTRFHLPVWLGFGAAFKHVI DKDIKNLKMLQDMYNQWPFFRVTIDLVEMVFAKGDPAIAAMYDKLLVVPELQPFGDQLRSKYLQTKDFLLQIAGHKEVLEADPYLKQRLRLRDAYITTLN VSQAYTLKRIRDPEYRVTLRPHLSKEYSDMTTKPAAELVKLNPTSEYAPGLEDTIILTMKGIAAGLQNTG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G42600		ATPPC2	phosphoenolpyruvate carboxylas...		Lus10029837 [exp]	0	1
AT2G04350		LACS8	long-chain acyl-CoA synthetase...		Lus10016083 [exp]	5.9	0.7538
AT4G20270		BAM3	BARELY ANY MERISTEM 3, Leucine...		Lus10038381 [exp]	12.9	0.7796
AT4G26450		WIP1	unknown protein		Lus10008342 [exp]	16.9	0.7678
AT3G13980			unknown protein		Lus10037659 [exp]	17.7	0.7434
AT3G14810		MSL5	mechanosensitive channel of sm...		Lus10005555 [exp]	29.1	0.7549
AT5G24470		APRR5	pseudo-response regulator 5 (....		Lus10032934 [exp]	34.5	0.7079
AT1G17420		ATLOX3, LOX3	Arabidopsis thaliana lipoxygen...		Lus10015666 [exp]	46.8	0.7260
AT5G43670			Sec23/Sec24 protein transport ...		Lus10022219 [exp]	54.1	0.7314
AT4G16070			Mono-/di-acylglycerol lipase, ...		Lus10037710 [exp]	56.9	0.7276
AT2G02820	MYB	ATMYB88	myb domain protein 88 (.1.2)		Lus10012847 [exp]	60.8	0.7208

Compare expression of checked genes

Lus10029837 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.