Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42610 259 / 2e-89 LSH10 LIGHT SENSITIVE HYPOCOTYLS 10, Protein of unknown function (DUF640) (.1), Protein of unknown function (DUF640) (.2) AT1G07090 215 / 2e-71 LSH6 LIGHT SENSITIVE HYPOCOTYLS 6, Protein of unknown function (DUF640) (.1) AT1G78815 213 / 1e-70 LSH7 LIGHT SENSITIVE HYPOCOTYLS 7, Protein of unknown function (DUF640) (.1) AT4G18610 211 / 5e-70 LSH9 LIGHT SENSITIVE HYPOCOTYLS 9, Protein of unknown function (DUF640) (.1) AT5G58500 203 / 5e-67 LSH5 LIGHT SENSITIVE HYPOCOTYLS 5, Protein of unknown function (DUF640) (.1) AT1G16910 196 / 2e-64 LSH8 LIGHT SENSITIVE HYPOCOTYLS 8, Protein of unknown function (DUF640) (.1) AT3G23290 194 / 2e-63 LSH4 LIGHT SENSITIVE HYPOCOTYLS 4, Protein of unknown function (DUF640) (.2) AT2G31160 192 / 4e-62 OBO1, LSH3 ORGAN BOUNDARY 1, LIGHT SENSITIVE HYPOCOTYLS 3, Protein of unknown function (DUF640) (.1) AT5G28490 186 / 4e-60 OBO2, LSH1 ORGAN BOUNDARY 2, LIGHT-DEPENDENT SHORT HYPOCOTYLS 1, Protein of unknown function (DUF640) (.1) AT3G04510 186 / 5e-60 LSH2 LIGHT SENSITIVE HYPOCOTYLS 2, Protein of unknown function (DUF640) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020700 [exp] 319 / 2e-112 AT2G42610 258 / 1e-88 LIGHT SENSITIVE HYPOCOTYLS 10, Protein of unknown function (DUF640) (.1), Protein of unknown function (DUF640) (.2) Lus10007272 [exp] 243 / 3e-82 AT2G42610 241 / 4e-82 LIGHT SENSITIVE HYPOCOTYLS 10, Protein of unknown function (DUF640) (.1), Protein of unknown function (DUF640) (.2) Lus10029219 [exp] 239 / 4e-81 AT2G42610 238 / 6e-81 LIGHT SENSITIVE HYPOCOTYLS 10, Protein of unknown function (DUF640) (.1), Protein of unknown function (DUF640) (.2) Lus10022023 [exp] 193 / 4e-63 AT1G07090 226 / 3e-76 LIGHT SENSITIVE HYPOCOTYLS 6, Protein of unknown function (DUF640) (.1) Lus10042565 [exp] 192 / 2e-62 AT5G28490 233 / 1e-78 ORGAN BOUNDARY 2, LIGHT-DEPENDENT SHORT HYPOCOTYLS 1, Protein of unknown function (DUF640) (.1) Lus10023383 [exp] 188 / 9e-61 AT1G07090 246 / 2e-83 LIGHT SENSITIVE HYPOCOTYLS 6, Protein of unknown function (DUF640) (.1) Lus10024901 [exp] 189 / 1e-60 AT2G31160 249 / 3e-84 ORGAN BOUNDARY 1, LIGHT SENSITIVE HYPOCOTYLS 3, Protein of unknown function (DUF640) (.1) Lus10022918 [exp] 189 / 1e-60 AT2G31160 249 / 4e-84 ORGAN BOUNDARY 1, LIGHT SENSITIVE HYPOCOTYLS 3, Protein of unknown function (DUF640) (.1) Lus10038424 [exp] 187 / 3e-60 AT1G07090 247 / 9e-84 LIGHT SENSITIVE HYPOCOTYLS 6, Protein of unknown function (DUF640) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G142400 [exp] 254 / 2e-87 AT2G42610 259 / 1e-89 LIGHT SENSITIVE HYPOCOTYLS 10, Protein of unknown function (DUF640) (.1), Protein of unknown function (DUF640) (.2) Potri.002G214200 [exp] 248 / 4e-85 AT2G42610 240 / 5e-82 LIGHT SENSITIVE HYPOCOTYLS 10, Protein of unknown function (DUF640) (.1), Protein of unknown function (DUF640) (.2) Potri.011G109900 [exp] 248 / 6e-85 AT2G42610 238 / 3e-81 LIGHT SENSITIVE HYPOCOTYLS 10, Protein of unknown function (DUF640) (.1), Protein of unknown function (DUF640) (.2) Potri.004G057300 [exp] 246 / 7e-84 AT2G42610 241 / 2e-82 LIGHT SENSITIVE HYPOCOTYLS 10, Protein of unknown function (DUF640) (.1), Protein of unknown function (DUF640) (.2) Potri.001G390900 [exp] 245 / 1e-83 AT1G78815 242 / 2e-82 LIGHT SENSITIVE HYPOCOTYLS 7, Protein of unknown function (DUF640) (.1) Potri.011G066400 [exp] 240 / 1e-81 AT2G42610 238 / 5e-81 LIGHT SENSITIVE HYPOCOTYLS 10, Protein of unknown function (DUF640) (.1), Protein of unknown function (DUF640) (.2) Potri.009G076100 [exp] 218 / 4e-72 AT1G07090 259 / 2e-88 LIGHT SENSITIVE HYPOCOTYLS 6, Protein of unknown function (DUF640) (.1) Potri.001G281000 [exp] 211 / 3e-69 AT1G07090 251 / 4e-85 LIGHT SENSITIVE HYPOCOTYLS 6, Protein of unknown function (DUF640) (.1) Potri.009G157600 [exp] 200 / 1e-65 AT5G28490 228 / 7e-77 ORGAN BOUNDARY 2, LIGHT-DEPENDENT SHORT HYPOCOTYLS 1, Protein of unknown function (DUF640) (.1) Potri.005G225600 [exp] 198 / 9e-65 AT2G31160 232 / 6e-78 ORGAN BOUNDARY 1, LIGHT SENSITIVE HYPOCOTYLS 3, Protein of unknown function (DUF640) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04852 [flax] [poplar] DUF640 Protein of unknown function (DUF640)
Representative CDS sequence Show only first row Show all	>Lus10029838 pacid=23159796 polypeptide=Lus10029838 locus=Lus10029838.g ID=Lus10029838.BGIv1.0 annot-version=v1.0 ATGTCAAGCAACCACAGAGGCAAGGAACTCATCGGTGAAGGAGGAGGATCCACTGCACCTGATCCTCACCACAACTACCAGCAGCAACCGTCCCTGCAGA CTCCGAGCCGGTACGAGTCGCAGAAGAGGAGAGACTGGAACACGTTCGGGCAGTACTTAAAGAACCAGAGGCCTCCCGTCCCGCTCTCCCACTGCAACTG CAGCCACGTCATCGACTTCCTCCGCTACCTCGACCAGTTCGGAAAGACTAAGGTCCACATCCAGGGCTGCATGTTTTACGGCCAGCCCGAGCCACCTGCT CCATGCACCTGCCCTCTCAGGCAGGCGTGGGGTAGCCTTGACGCCCTCATAGGCAGGCTGAGGGCTGCCTATGAGGAGAACGGTGGGTCCCCTGAGACGA ACCCGTTTGCTAGTGGGGCGATTAGGGTTTATCTCAGGGAGGTTAGGGATTGCCAGGCGAAGGCTCGGGGGATTCCTTACAAGAAGAAGAAGAAGAAACC ACTGGGTTTTGGTGGGAGGGGATCGTCGTCGAGTCATGATCATGATGATCACTCTAGCTCTGCTCCTCCGATAATGCACTACTCTTGA
AA sequence Show only first row Show all	>Lus10029838 pacid=23159796 polypeptide=Lus10029838 locus=Lus10029838.g ID=Lus10029838.BGIv1.0 annot-version=v1.0 MSSNHRGKELIGEGGGSTAPDPHHNYQQQPSLQTPSRYESQKRRDWNTFGQYLKNQRPPVPLSHCNCSHVIDFLRYLDQFGKTKVHIQGCMFYGQPEPPA PCTCPLRQAWGSLDALIGRLRAAYEENGGSPETNPFASGAIRVYLREVRDCQAKARGIPYKKKKKKPLGFGGRGSSSSHDHDDHSSSAPPIMHYS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G42610		LSH10	LIGHT SENSITIVE HYPOCOTYLS 10,...		Lus10029838 [exp]	0	1
					Lus10002087 [exp]	3.5	0.9314
AT5G57150	bHLH	bHLH035	basic helix-loop-helix (bHLH) ...		Lus10006951 [exp]	4.9	0.9115
AT3G56230			BTB/POZ domain-containing prot...		Lus10010216 [exp]	5.1	0.9313
AT4G22990			Major Facilitator Superfamily ...		Lus10015852 [exp]	5.3	0.9084
AT4G12010			Disease resistance protein (TI...		Lus10004075 [exp]	12.0	0.8873
AT2G21100			Disease resistance-responsive ...		Lus10034478 [exp]	15.3	0.9041
					Lus10003852 [exp]	20.3	0.8822
AT5G05340			Peroxidase superfamily protein...		Lus10008581 [exp]	20.5	0.8741
AT4G06536			SPla/RYanodine receptor (SPRY)...		Lus10010045 [exp]	21.9	0.8938
AT2G16750			Protein kinase protein with ad...		Lus10019787 [exp]	22.0	0.9013

Compare expression of checked genes

Lus10029838 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.