Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01950 426 / 1e-145 ATGPAT3, GPAT3 glycerol-3-phosphate acyltransferase 3 (.1) AT1G02390 416 / 2e-141 ATGPAT2, GPAT2 ARABIDOPSIS THALIANA GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 2, glycerol-3-phosphate acyltransferase 2 (.1) AT1G06520 369 / 1e-122 ATGPAT1, GPAT1 glycerol-3-phosphate acyltransferase 1 (.1) AT5G06090 305 / 1e-98 ATGPAT7, GPAT7 glycerol-3-phosphate acyltransferase 7 (.1) AT3G11430 304 / 2e-98 ATGPAT5, GPAT5 glycerol-3-phosphate acyltransferase 5 (.1) AT2G38110 303 / 4e-98 ATGPAT6, GPAT6 glycerol-3-phosphate acyltransferase 6 (.1) AT4G00400 296 / 2e-95 AtGPAT8, GPAT8 glycerol-3-phosphate acyltransferase 8 (.1) AT1G01610 290 / 1e-92 ATGPAT4, GPAT4 glycerol-3-phosphate acyltransferase 4 (.1) AT3G11325 194 / 3e-57 Phospholipid/glycerol acyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000072 [exp] 443 / 7e-157 AT1G06520 235 / 2e-74 glycerol-3-phosphate acyltransferase 1 (.1) Lus10000071 [exp] 428 / 7e-151 AT1G06520 238 / 1e-75 glycerol-3-phosphate acyltransferase 1 (.1) Lus10020767 [exp] 402 / 4e-136 AT1G06520 569 / 0.0 glycerol-3-phosphate acyltransferase 1 (.1) Lus10001449 [exp] 394 / 5e-133 AT4G01950 517 / 2e-180 glycerol-3-phosphate acyltransferase 3 (.1) Lus10002421 [exp] 384 / 3e-129 AT4G01950 514 / 2e-179 glycerol-3-phosphate acyltransferase 3 (.1) Lus10010934 [exp] 383 / 4e-128 AT1G06520 605 / 0.0 glycerol-3-phosphate acyltransferase 1 (.1) Lus10031396 [exp] 376 / 2e-125 AT1G06520 595 / 0.0 glycerol-3-phosphate acyltransferase 1 (.1) Lus10036684 [exp] 327 / 6e-107 AT2G38110 558 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Lus10010741 [exp] 323 / 2e-105 AT2G38110 555 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G192600 [exp] 484 / 4e-168 AT4G01950 601 / 0.0 glycerol-3-phosphate acyltransferase 3 (.1) Potri.005G202200 [exp] 391 / 1e-131 AT1G06520 650 / 0.0 glycerol-3-phosphate acyltransferase 1 (.1) Potri.016G063900 [exp] 326 / 1e-106 AT2G38110 533 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Potri.006G198100 [exp] 326 / 1e-106 AT2G38110 527 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Potri.016G113100 [exp] 304 / 3e-98 AT2G38110 789 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Potri.010G201200 [exp] 303 / 3e-98 AT3G11430 720 / 0.0 glycerol-3-phosphate acyltransferase 5 (.1) Potri.006G097800 [exp] 303 / 7e-98 AT2G38110 809 / 0.0 glycerol-3-phosphate acyltransferase 6 (.1) Potri.008G058200 [exp] 302 / 1e-97 AT5G06090 704 / 0.0 glycerol-3-phosphate acyltransferase 7 (.1) Potri.014G085500 [exp] 302 / 2e-97 AT4G00400 757 / 0.0 glycerol-3-phosphate acyltransferase 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0228 [flax] [poplar] Acyltransferase PF01553 [flax] [poplar] Acyltransferase Acyltransferase
Representative CDS sequence Show only first row Show all	>Lus10029839 pacid=23159636 polypeptide=Lus10029839 locus=Lus10029839.g ID=Lus10029839.BGIv1.0 annot-version=v1.0 ATGACTATCATCAAGAATTTCTCCAAACCAGTTTCAGGAAACATGCTGGTGTTCAACATGGAAGAAACCTTGCTGAAGTCACCATCAGTGTTTCCCTACT TCATGCTGGTGGCATTTGAAGCTGGAAATCCACTGAGGGCATTATTTCTGTTGCTTCTCTACCCTTTGATCTGCTTACTTGGGGACGAGATGGGATTGAG TGTCATGGTCTTTGTGAGCTTTGTGGGGCTTAAAGCAGAGAGCTTTAGGGTTGGAAGAAGTGTGCTGCCCAAGTTCTTTCTTGAAGATGTTGGTCTTGAA GGGTTCGAGAGGGTGATGAGATCGTACGGAATGAGTAAAGTAGTTTGCGTCACAAGTTTCCCTAGAATCATGGTGGAAGGGTTTCTTAAGCATTACTTGG GGATTGAAGGTGTTCTAGGCAGAGAGATGGTTGTGGTTCATGGCTACTTTACTGGTATGATGGAACAAAGGATCAAAGCTAATGATCAGCTGAGTTTCAG TAGTGAAATCAAGGCACTTAACATGGTCACAGCAGCAGAGAAGAGAAGTTGGCAAACCCTTCCAAGAAACAAGTATCCAAAACCACTCATCTTCCACGAC GGAAGATTGGCATTCAGACCAACTCCAACAGCAACTTTGGCAATGTTCATCTGGCTACCATTCGGATTCTTCTTGTTCATCATCCGAATGGCAATTGGCA CCCTTTTTCCGTTCGAACTTGCAATCCCTCTCTTCCATTTCGTAGGAATGGGAGGCTTCTACTCAGAACCAGATGTTCATGACAAAGCATCATCATCAAA GAGGGGCACCCTTTATGTCTCCAACCACAAGACCTTGTTCGACCCGTTATACATCTCCATGTGCTTAAACAAGCCCCTCACAGCCGTCACATACAGCTTG AGCAAGTTCTCGGAGGTGTTGGCGCCAATCAAGACCATTCGGATCACTAGGAACAAAGAACAGGATTTGAAGCTGATCAAGGATCTGCTGAGCAAAGGTG ACCTTGCATTGTGTCCTGAAGGAACAACTTGTCGGGAACCTTACTTACTAAGATTTAGTCCGATGTTTGCTGAGGTAGGGAAGGACATTGTTCCCGTGGC GATCGATATGAAGAGCAATATGTTCTATGGAACAACTGCTGGCGGGTTGAAAGGGTTTGACCCGTTGTTCGCTCTGATGAACCCTTGGCTTACTTGTACT CTAAGAATCCTTGACAAGTTGCCTGAATGGATGATTTCCACTGAGGAGGGTAGAGGTAAGTCCGGGATTGAGGTTTCGAATTATGTGCAGTCAAAGATTG GGGAAGCTATGAACTTTGAATCCACCAGCTTGACTAGGAAGGATAAGTACAGGTTCCTGGCAAATAATGAAGGAACTGTCACAAATTGA
AA sequence Show only first row Show all	>Lus10029839 pacid=23159636 polypeptide=Lus10029839 locus=Lus10029839.g ID=Lus10029839.BGIv1.0 annot-version=v1.0 MTIIKNFSKPVSGNMLVFNMEETLLKSPSVFPYFMLVAFEAGNPLRALFLLLLYPLICLLGDEMGLSVMVFVSFVGLKAESFRVGRSVLPKFFLEDVGLE GFERVMRSYGMSKVVCVTSFPRIMVEGFLKHYLGIEGVLGREMVVVHGYFTGMMEQRIKANDQLSFSSEIKALNMVTAAEKRSWQTLPRNKYPKPLIFHD GRLAFRPTPTATLAMFIWLPFGFFLFIIRMAIGTLFPFELAIPLFHFVGMGGFYSEPDVHDKASSSKRGTLYVSNHKTLFDPLYISMCLNKPLTAVTYSL SKFSEVLAPIKTIRITRNKEQDLKLIKDLLSKGDLALCPEGTTCREPYLLRFSPMFAEVGKDIVPVAIDMKSNMFYGTTAGGLKGFDPLFALMNPWLTCT LRILDKLPEWMISTEEGRGKSGIEVSNYVQSKIGEAMNFESTSLTRKDKYRFLANNEGTVTN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G01950		ATGPAT3, GPAT3	glycerol-3-phosphate acyltrans...		Lus10029839 [exp]	0	1
AT1G06520		ATGPAT1, GPAT1	glycerol-3-phosphate acyltrans...		Lus10000072 [exp]	1.0	0.9944
AT2G44810		DAD1	DEFECTIVE ANTHER DEHISCENCE 1,...		Lus10028210 [exp]	2.4	0.9495
AT1G06520		ATGPAT1, GPAT1	glycerol-3-phosphate acyltrans...		Lus10000071 [exp]	3.0	0.9475
AT1G75620			glyoxal oxidase-related protei...		Lus10024312 [exp]	6.0	0.9125
AT4G15800		RALFL33	ralf-like 33 (.1)		Lus10000502 [exp]	6.3	0.9011
					Lus10037463 [exp]	6.5	0.8920
AT3G47110			Leucine-rich repeat protein ki...		Lus10038688 [exp]	7.7	0.8189
					Lus10016420 [exp]	10.2	0.8673
AT1G73880		UGT89B1	UDP-glucosyl transferase 89B1 ...		Lus10021719 [exp]	10.8	0.8667
AT1G24140			Matrixin family protein (.1)		Lus10039464 [exp]	11.8	0.8878

Compare expression of checked genes

Lus10029839 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.