Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G56500 1460 / 0 haloacid dehalogenase-like hydrolase family protein (.1) AT3G07060 79 / 1e-14 EMB1974 embryo defective 1974, NHL domain-containing protein (.1) AT4G21470 71 / 2e-12 ATFMN/FHY riboflavin kinase/FMN hydrolase (.1) AT3G14860 61 / 5e-09 NHL domain-containing protein (.1.2) AT3G48420 58 / 1e-08 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT2G38740 57 / 1e-08 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT4G39970 54 / 2e-07 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT1G70280 51 / 3e-06 NHL domain-containing protein (.1.2) AT5G14890 47 / 0.0001 NHL domain-containing protein (.1) AT4G11570 46 / 0.0001 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1), Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020699 [exp] 1848 / 0 AT1G56500 1467 / 0.0 haloacid dehalogenase-like hydrolase family protein (.1) Lus10028605 [exp] 76 / 3e-14 AT4G21470 558 / 0.0 riboflavin kinase/FMN hydrolase (.1) Lus10018906 [exp] 75 / 7e-14 AT4G21470 556 / 0.0 riboflavin kinase/FMN hydrolase (.1) Lus10022801 [exp] 76 / 2e-13 AT3G07060 631 / 0.0 embryo defective 1974, NHL domain-containing protein (.1) Lus10011867 [exp] 74 / 5e-13 AT3G07060 621 / 0.0 embryo defective 1974, NHL domain-containing protein (.1) Lus10018435 [exp] 72 / 1e-12 AT4G21470 553 / 0.0 riboflavin kinase/FMN hydrolase (.1) Lus10003018 [exp] 66 / 2e-11 AT2G38740 355 / 1e-124 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10040116 [exp] 60 / 2e-09 AT2G38740 347 / 3e-122 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10033034 [exp] 59 / 1e-08 AT3G48420 424 / 4e-150 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G007800 [exp] 1558 / 0 AT1G56500 1489 / 0.0 haloacid dehalogenase-like hydrolase family protein (.1) Potri.002G241366 [exp] 82 / 1e-15 AT3G07060 584 / 0.0 embryo defective 1974, NHL domain-containing protein (.1) Potri.003G086900 [exp] 74 / 2e-14 AT2G38740 359 / 6e-127 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.001G147300 [exp] 69 / 2e-12 AT2G38740 360 / 5e-127 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.011G107800 [exp] 69 / 8e-12 AT3G14860 553 / 0.0 NHL domain-containing protein (.1.2) Potri.002G077200 [exp] 65 / 1e-10 AT4G21470 561 / 0.0 riboflavin kinase/FMN hydrolase (.1) Potri.001G147400 [exp] 63 / 2e-10 AT2G38740 350 / 2e-123 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.005G183400 [exp] 62 / 1e-09 AT4G21470 575 / 0.0 riboflavin kinase/FMN hydrolase (.1) Potri.001G387500 [exp] 61 / 5e-09 AT3G14860 534 / 0.0 NHL domain-containing protein (.1.2) Potri.007G095200 [exp] 59 / 7e-09 AT4G39970 439 / 3e-156 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF08534 [flax] [poplar] Redoxin Redoxin CL0186 [flax] [poplar] Beta_propeller PF01436 [flax] [poplar] NHL NHL repeat CL0137 [flax] [poplar] HAD PF00702 [flax] [poplar] Hydrolase haloacid dehalogenase-like hydrolase
Representative CDS sequence Show only first row Show all	>Lus10029840 pacid=23159803 polypeptide=Lus10029840 locus=Lus10029840.g ID=Lus10029840.BGIv1.0 annot-version=v1.0 ATGGCCTTGAAGCTACTGTCACCTGCTCCTCCTTCTTCACTATCGCCTCCGAATTCTTCCTTCTTCTCCTTCGCTTCTGCTCCAAATCCCATCTCCAGGA CTCTCTGGAAGAACCATCAGCACCATCTTCATCAGCAGCAGCATCACAAAGCTTTCAGGCAAAGAATGCCGGTGAGCGCTTGCCTCAAGGTGGATGAGCA GCAGCAGCAGCAATCGGCGGCAACCAATTGGGGGAAAGTCTCTGCCGTGCTTTTCGACATGGACGGAGTGCTCTGCAACAGCGAAGAGCTCTCGAGAATG GCTGCTGTGGATCTCTTTTCCGAAATGGGAATCCAGGTCACGGTGGATGATTTCGTGCCTTTCACCGGCACAGGTGAAATAAACTTTCTAGGTGGGGTAG CAAATGCCAAGGGAATTGAAGGTTTTGATGCCCAGGCTGCCAAAGAGAGGTTCTTTGAGATCTATCTTAATAAGTATGCAAAACCCGAGGCTGGTATTGG ATTTCCTGGCGCTCTTGAACTCGTTACTCAGTGCAAAAACAAGGGTCTCAAAGTAGCTGTTGCGTCTAGTGCCGACCGTGTTAAAGTCGACGCAAACTTG GCTGCTTCTGCTTTACCACTCTCAATGTTTGATGCTATTGTGTCAGCTGATGCTTTCGAGAATCTAAAACCAGCTCCTGATATTTTCTTGGCCGCATCAA GAATATTGGATGTTCCACCTAGTGAGTGTCTTGTAATTGAAGACGCGCGGGCTGGAGTCCAAGCTGCACAAGCAGCAAAAATGAGATGCATAGCTGTGAC AACTACACTGGCGCAAGAGGCTCTGGAAAGTGCTGGTCCTTCTCTCATTAGAAGTCAGATAGGGAGTATTTCACTTGAAGATATTCTGAGTGGAGGAAGT GGTTCCTATAATGAGAAGATGCAGCAATCTCTGGTTATGAGTTCTTCTGTACAGACTTCAGAAGCCATGGCAATACCCACAACAGGAAATGGCCCGATCC TTAACAAGGAAATAGCTACCGGTGACAAGAATTTCTCAATTGGCGGGTTGCAGGGTTCTCGTCGAGAATTATTGAGATATGGAAGTCTTGGTATTGCATT ATCTTGTCTCTATTTCACAGCCACAAACTGGAAGGCAATGCAATATGCTTCCCCTAAAGCTATATGGAACTTATTATTTGGAGTCAACAGTCCGTCTTTC GACAAGGGTGATAGTGCAGGCATGTCTCGCTTCTCTAGAGTCCAACAGTTCGTCAAGTATATTTCTGATATAGAAGCTAGGGGATCTACTACAACAGTCC CTGAATTCCCATCAAGACTTGATTGGCTAAATACTGCTCCACTTCAATTCCGGAGAGATCTGAAGGGAAAAGTTGTCCTGCTGGATTTTTGGACCTACTG CTGCATAAACTGCATGCATGTGTTGCCAGATCTAGAGTTTCTGGAGAGGAAATACAAAGACATGCCGTTTACTGTTGTTGGGGTACATTCTGCTAAGTTC GACAATGAGAAGGATCTTGAAGCCATAAAGAATGCAGTCCTACGCTATAATATATCCCACCCCGTTGTCAATGATGGAGAGATGTATATGTGGCGTGAGC TAGGTATTAATTCATGGCCTACATTTGCTATTGTTGGACCTACCGGTAAACTTATTGCACAGGTAGCGGGAGAAGGCCATCGACAGGACGCTGATGATTT CATAGAGGCAGCTCTTCAGTATTATGGCAAGAAAAAGATCCTAGATAGCACCCCGATTCCCCTAAATTTGGAAAAAGATAGAGACCAACGTCTCTACAAT TCGCCTTTGAAATTTCCTGGAAAGCTAGCGATTGATCTGCTTAACAACCGACTGTTCATCTCAGACAGCAACCACAACCGAATAGTGGTAACGGACCTTG CTGGAAACTTTATTTCGCAAGTTGGTAGCACAGGAGAGGAAGGGTTACGTGATGGTTCATTTGACAATGCCACCTTTAATCGTCCTCAGGGTCTGGCTTA TAATCCAAAGAAAAATATCCTCTATGTTGCAGATACAGAAAATCATGCTCTGAGAGAGATCAATTTGGTTGATGATACAGTGCGAACACTTTCTGGAAAT GGAACCAAAGGCTCTGATTATCAAGGGCTTCTCAACTCCCCATGGGATGTATGCTACGAGCCTATCAATGAAAAGGTATACATTGCTATGGCTGGCCAAC ACCAGATATGGGAGCACAACACAGCCGATGGTATTACTAAAGTGTTTAGTGGTGATGGCTATGAAAGGAATTTGAATGGTTCAAACTCTAAGAACACCTC ATTTGCTCAACCTTCTGGGATTTCGTTTTCCCGTGATTTGAAGGAGGCATATATTGCTGATAGCGAAAGTAGCTCTGTCCGTGCACTTGATCTGAAGACC GGAGGGTCTAGGTTATTGGTTGGTGGAGACCCTATTTTCCCTGATAATTTGTTCAAGTTCGGAGACAGTGATGGAGTAGGATCTGAAGTGCTTCTTCAGC ATCCCCTGGGTGTAATTTGTGCAGCGGATGGTCAAATCTACATAGCAGATAGCTACAATCACAAGATCAAAAAGCTAGACCCCGCAACTAGAAGAGTTAC AACAATTGCTGGGACAGGGAAAGCTGGTTTCAAGGATGGAACAGCATTAGATGCTCAGCTCTCTGAACCATCTGGAATCATTGAAGTGGAAAGAGGAAGG CTGATCATAGCCGATACAAACAACAGTGTGATCAGGTGTCTGGACTTGAATAAAGAGGAAGCTGAACTTAGTACGCTCGAGCTGAAGGGTGTTCTCCCTC CGGCCCCAAGATCGAGATCGTTGAAACGTCTGAGGAGAAGGGCATCAGCCGACACGCAAATTGTTAAAGTCGATGGTGTTTACTCCAACGAGGGAAAGCT ATTGCTGAAAATTTCATTACCCGAGGAGTACCATTTCTCAAAGGAAGCAAGAAGTAAATTCACAGTTGATGCTGAGCCCGAAGATGCACTGACAACCAAT CCCTCGGATGGATACCTTAGTGCACAAGGAACTGCTTTGATCCACTACAAGAGATCATCCGCCTCAGCTTCAACCGGGAAAATCGTGTGCAAGGTATACT ATTGCAAGGAAGATGAGGTTTGTTTGTACCAATCTCTTATGTTCGAGGTACCGTTCGAACAAGAAAATAGCGAATCTACATCATCAGAATCAGAATCAGA GGTCACACTTGCTTACCTTGTGAAGCCCAAGGGAACAACCGGTTTGCAGCTGCCGGCCTCCGGCTAA
AA sequence Show only first row Show all	>Lus10029840 pacid=23159803 polypeptide=Lus10029840 locus=Lus10029840.g ID=Lus10029840.BGIv1.0 annot-version=v1.0 MALKLLSPAPPSSLSPPNSSFFSFASAPNPISRTLWKNHQHHLHQQQHHKAFRQRMPVSACLKVDEQQQQQSAATNWGKVSAVLFDMDGVLCNSEELSRM AAVDLFSEMGIQVTVDDFVPFTGTGEINFLGGVANAKGIEGFDAQAAKERFFEIYLNKYAKPEAGIGFPGALELVTQCKNKGLKVAVASSADRVKVDANL AASALPLSMFDAIVSADAFENLKPAPDIFLAASRILDVPPSECLVIEDARAGVQAAQAAKMRCIAVTTTLAQEALESAGPSLIRSQIGSISLEDILSGGS GSYNEKMQQSLVMSSSVQTSEAMAIPTTGNGPILNKEIATGDKNFSIGGLQGSRRELLRYGSLGIALSCLYFTATNWKAMQYASPKAIWNLLFGVNSPSF DKGDSAGMSRFSRVQQFVKYISDIEARGSTTTVPEFPSRLDWLNTAPLQFRRDLKGKVVLLDFWTYCCINCMHVLPDLEFLERKYKDMPFTVVGVHSAKF DNEKDLEAIKNAVLRYNISHPVVNDGEMYMWRELGINSWPTFAIVGPTGKLIAQVAGEGHRQDADDFIEAALQYYGKKKILDSTPIPLNLEKDRDQRLYN SPLKFPGKLAIDLLNNRLFISDSNHNRIVVTDLAGNFISQVGSTGEEGLRDGSFDNATFNRPQGLAYNPKKNILYVADTENHALREINLVDDTVRTLSGN GTKGSDYQGLLNSPWDVCYEPINEKVYIAMAGQHQIWEHNTADGITKVFSGDGYERNLNGSNSKNTSFAQPSGISFSRDLKEAYIADSESSSVRALDLKT GGSRLLVGGDPIFPDNLFKFGDSDGVGSEVLLQHPLGVICAADGQIYIADSYNHKIKKLDPATRRVTTIAGTGKAGFKDGTALDAQLSEPSGIIEVERGR LIIADTNNSVIRCLDLNKEEAELSTLELKGVLPPAPRSRSLKRLRRRASADTQIVKVDGVYSNEGKLLLKISLPEEYHFSKEARSKFTVDAEPEDALTTN PSDGYLSAQGTALIHYKRSSASASTGKIVCKVYYCKEDEVCLYQSLMFEVPFEQENSESTSSESESEVTLAYLVKPKGTTGLQLPASG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G56500			haloacid dehalogenase-like hyd...		Lus10029840 [exp]	0	1
AT1G56500			haloacid dehalogenase-like hyd...		Lus10020699 [exp]	1.0	0.9607
AT5G35170			adenylate kinase family protei...		Lus10036326 [exp]	1.4	0.9604
AT5G02830			Tetratricopeptide repeat (TPR)...		Lus10015053 [exp]	1.7	0.9598
AT2G47910		CRR6	chlororespiratory reduction 6 ...		Lus10008032 [exp]	3.9	0.9250
AT3G23070		ATCFM3A	CRM family member 3A (.1)		Lus10022091 [exp]	4.2	0.9216
AT4G01800		AtcpSecA, AGY1,...	Arabidopsis thaliana chloropla...		Lus10009973 [exp]	4.5	0.9397
AT5G03900			Iron-sulphur cluster biosynthe...		Lus10017039 [exp]	5.7	0.9275
AT1G17220		FUG1	fu-gaeri1, Translation initiat...		Lus10013713 [exp]	5.7	0.9405
AT1G64430			Pentatricopeptide repeat (PPR)...		Lus10001823 [exp]	6.0	0.9383
AT1G01320			Tetratricopeptide repeat (TPR)...		Lus10030258 [exp]	6.2	0.9263

Compare expression of checked genes

Lus10029840 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.