Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26820 672 / 0 RTS3, MAR1, ATIREG3 MULTIPLE ANTIBIOTIC RESISTANCE 1, IRON REGULATED 3, iron-regulated protein 3 (.1) AT5G03570 89 / 3e-18 FPN2, ATIREG2 FERROPORTIN 2, ARABIDOPSIS THALIANA IRON-REGULATED PROTEIN 2, iron regulated 2 (.1.2) AT2G38460 84 / 1e-16 FPN1, ATIREG1 FERROPORTIN 1, ARABIDOPSIS THALIANA IRON-REGULATED PROTEIN 1, iron regulated 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020698 [exp] 1243 / 0 AT5G26820 657 / 0.0 MULTIPLE ANTIBIOTIC RESISTANCE 1, IRON REGULATED 3, iron-regulated protein 3 (.1) Lus10031421 [exp] 841 / 0 AT5G26820 669 / 0.0 MULTIPLE ANTIBIOTIC RESISTANCE 1, IRON REGULATED 3, iron-regulated protein 3 (.1) Lus10010912 [exp] 812 / 0 AT5G26820 648 / 0.0 MULTIPLE ANTIBIOTIC RESISTANCE 1, IRON REGULATED 3, iron-regulated protein 3 (.1) Lus10001263 [exp] 78 / 7e-15 AT2G38460 602 / 0.0 FERROPORTIN 1, ARABIDOPSIS THALIANA IRON-REGULATED PROTEIN 1, iron regulated 1 (.1) Lus10012214 [exp] 0 / 1 AT5G01720 731 / 0.0 RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G012900 [exp] 739 / 0 AT5G26820 783 / 0.0 MULTIPLE ANTIBIOTIC RESISTANCE 1, IRON REGULATED 3, iron-regulated protein 3 (.1) Potri.016G128600 [exp] 80 / 2e-15 AT5G03570 610 / 0.0 FERROPORTIN 2, ARABIDOPSIS THALIANA IRON-REGULATED PROTEIN 2, iron regulated 2 (.1.2) Potri.016G128500 [exp] 68 / 9e-12 AT5G03570 588 / 0.0 FERROPORTIN 2, ARABIDOPSIS THALIANA IRON-REGULATED PROTEIN 2, iron regulated 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF06963 [flax] [poplar] FPN1 Ferroportin1 (FPN1)
Representative CDS sequence Show only first row Show all	>Lus10029841 pacid=23159721 polypeptide=Lus10029841 locus=Lus10029841.g ID=Lus10029841.BGIv1.0 annot-version=v1.0 ATGGTCCAATTCATTCTCTCAGCTCCCAGTTTCACCCTCTTCTCCTCCTCACCCAAGGCGGCACCGGCTGCTCCACTGCGTGCTTCCCAAATCAGCTATC TCGTTTCTGCTGGAAGATGGTTGAATCGTGGTTCTCGTTCCCTTTCTTATTGCAGGTTTAAAAATTTGAATACAAGGTGCTCGAATGTCAACTCTGATGT CCACTTCAGCCATGTTGTGGCTGATGATGAGTTTCCGGAAGAGGTCTCATCTATTCAAGGAGATTATATGACCCCTGTTGTTCAGCTTAATACTGAAATT TTCGAGACTTCAAGCTTCGGTTTGTTGGTGGAAACTACCGATGCAAATGAGTTTTCGGAGGAGGTCTCATCTATTGAAGGAGATTTTTTGAACCCCATTG TTCAGCTCAATACCGAAATATTCAACACTCCAAGCTTTGGTTTGTTGGCGGAAACATCTGATGCGGATGATGAGTTTCCGGAGGAGGTGTCATCTAATCA AGGAGATTATTCGACCCCCATTGTTCAGCTCAATACCGAAATATTCGAGACTCCGAGCTTTGGTTTGTTGGTGGAAATAACTGATGTGGATGACCTGTTG TCGGCATTGCCTGTTTTATCCGAAGAAGAGCAGAATGCTCTGGCAGCCACCCCAGCCCATCCAGTTGGCTTGCATGCATTTTATGCTAGTGTCGTTGTTG GGAACGTTGTGGAACGGCTATGGGAGTTCACGTGGCCTTCTGCTATAGCATTGCTTTATCCAAGCCTTCTACCAGTGGCAGTCATGGGTTTCTTAGCTAA GTCGGCTTTACTTGTTGGGGGGCCTTTGGTTGGAAAACTCATGGACTATTATCCCAGAGTACCCACATATATTAGTCTTAATATTATCCAGGCCGTTGCC CAGCTGGTGTCTGCTGGGATGATAATTCACGGTCATGCAGTGGCACAAACTTCCACGTCTTCAGTCGTTCTCCGTCCATGGTTTTCTGTGCTAGTTTTAG CCGGGGCTATTGAGAAACTATGTGGAGTAGCATTGGGGATTGCTAATGAGCGTGATTGGGTTGTGCAGTTAGCTGGGATAAGTAGGCCTATTGCACTTGC ACAAGCAAATGCTGTTCTTACTCGGATTGATATGCTTTCAGAGATAGCTGGAGCATCAATGTTCGGAGTTCTTCTTTCCAAGTTCGGTCCTGTTACTTGC GTGAAATTTACTTGCACTTTGATGATTGCTTCATTGCCCCTGCTGATTGGCCTCACATGTTTAACAAACAAGCTATCCAGTGGGGTTCTTGGTACTACTA GATCTTCCCAGTACGGTTGCAGAGACTCCATTGGTGAAGCTGCGACTCAGGAACATCATATAGTATATAGATGTCTGGAAACCATAAAACTCGGATGGAA GGAATATATTCAACATCCAGTTCTCCCTGCAAGCATTGCCTATGTACTACTGTTCTTTAATATTGTGCTTGGTCCTACTAGTTTGATGACGGCATTTTTG ACTCAGCAAGGAGTAAATCCGTCAATTATCGGCGGTTTCAGTGGACTCTGTGCAGTCATGGGAATCGCGGCGACATTCCTTGCGGCAACTCTGGTCAAAC AACTAGGGATTTTGAAGGCTGTAGCTTTTGGATTGATATTCCAGGCTTCACTGCTAGTCATGGCTGTGACAGTGTATTGGAGTGGACCCATGTCTCATCA GAGTCCTATTATATTCTTCTTGGGCTTGATTGTAGTATCCAGACTGGGACAAATGTCAACGGTAGTAGCAGGAGCACAAATTCTGCAGACAGGGATCCCA TCATCAAAGGCAAATCTGATAGGGATAACTGAGGCATCGGTTGCGAGCTTAGCCGAGTCTTCCATGCTGGGGGTTGCAATAGTAGCAAACGAGGCTTCCC ATTACGGGATGTTAGCGTTGCTGTCGGTTACAGCGGTAGTTGGTTCGGCTTGGATTTTCTGCAGATGGGCTATGAATCCAACTCCAGAACAAAGGCGGTT GTTTTCTTCTTCTAATCCCATTCCTATTGCCTGA
AA sequence Show only first row Show all	>Lus10029841 pacid=23159721 polypeptide=Lus10029841 locus=Lus10029841.g ID=Lus10029841.BGIv1.0 annot-version=v1.0 MVQFILSAPSFTLFSSSPKAAPAAPLRASQISYLVSAGRWLNRGSRSLSYCRFKNLNTRCSNVNSDVHFSHVVADDEFPEEVSSIQGDYMTPVVQLNTEI FETSSFGLLVETTDANEFSEEVSSIEGDFLNPIVQLNTEIFNTPSFGLLAETSDADDEFPEEVSSNQGDYSTPIVQLNTEIFETPSFGLLVEITDVDDLL SALPVLSEEEQNALAATPAHPVGLHAFYASVVVGNVVERLWEFTWPSAIALLYPSLLPVAVMGFLAKSALLVGGPLVGKLMDYYPRVPTYISLNIIQAVA QLVSAGMIIHGHAVAQTSTSSVVLRPWFSVLVLAGAIEKLCGVALGIANERDWVVQLAGISRPIALAQANAVLTRIDMLSEIAGASMFGVLLSKFGPVTC VKFTCTLMIASLPLLIGLTCLTNKLSSGVLGTTRSSQYGCRDSIGEAATQEHHIVYRCLETIKLGWKEYIQHPVLPASIAYVLLFFNIVLGPTSLMTAFL TQQGVNPSIIGGFSGLCAVMGIAATFLAATLVKQLGILKAVAFGLIFQASLLVMAVTVYWSGPMSHQSPIIFFLGLIVVSRLGQMSTVVAGAQILQTGIP SSKANLIGITEASVASLAESSMLGVAIVANEASHYGMLALLSVTAVVGSAWIFCRWAMNPTPEQRRLFSSSNPIPIA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G26820		RTS3, MAR1, ATI...	MULTIPLE ANTIBIOTIC RESISTANCE...		Lus10029841 [exp]	0	1
AT4G15110		CYP97B3	"cytochrome P450, family 97, s...		Lus10039040 [exp]	1.7	0.9468
AT1G48520		GATB	GLU-ADT subunit B (.1.2.3)		Lus10012905 [exp]	2.6	0.9153
AT1G50450			Saccharopine dehydrogenase (....		Lus10027349 [exp]	3.9	0.9293
AT2G34860		EDA3	embryo sac development arrest ...		Lus10024221 [exp]	4.5	0.9342
AT2G21280		GC1, ATSULA	GIANT CHLOROPLAST 1, NAD(P)-bi...		Lus10018055 [exp]	6.9	0.9123
AT4G02260		AT-RSH1, RSH1, ...	RELA-SPOT HOMOLOG 1, RELA/SPOT...		Lus10008210 [exp]	7.7	0.8948
AT1G17220		FUG1	fu-gaeri1, Translation initiat...		Lus10005581 [exp]	9.2	0.9258
AT1G17220		FUG1	fu-gaeri1, Translation initiat...		Lus10013713 [exp]	9.7	0.9195
AT5G22800		EMB86, EMB263, ...	EMBRYO DEFECTIVE 86, EMBRYO DE...		Lus10022640 [exp]	16.1	0.9175
AT3G17040		HCF107	high chlorophyll fluorescent 1...		Lus10037766 [exp]	16.4	0.8872

Compare expression of checked genes

Lus10029841 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.