Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26850 1075 / 0 Uncharacterized protein (.1.2.3.4) AT2G41830 520 / 3e-168 Uncharacterized protein (.1) AT5G21080 496 / 5e-159 Uncharacterized protein (.1) AT1G05960 379 / 2e-115 ARM repeat superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020697 [exp] 1878 / 0 AT5G26850 1103 / 0.0 Uncharacterized protein (.1.2.3.4) Lus10026298 [exp] 549 / 6e-180 AT2G41830 1083 / 0.0 Uncharacterized protein (.1) Lus10001161 [exp] 533 / 9e-174 AT1G05960 999 / 0.0 ARM repeat superfamily protein (.1.2) Lus10019717 [exp] 512 / 4e-166 AT2G41830 1012 / 0.0 Uncharacterized protein (.1) Lus10006583 [exp] 507 / 1e-163 AT1G05960 960 / 0.0 ARM repeat superfamily protein (.1.2) Lus10042372 [exp] 466 / 3e-146 AT2G41830 840 / 0.0 Uncharacterized protein (.1) Lus10016400 [exp] 240 / 1e-65 AT5G21080 538 / 5e-175 Uncharacterized protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G008500 [exp] 1290 / 0 AT5G26850 1132 / 0.0 Uncharacterized protein (.1.2.3.4) Potri.016G055100 [exp] 556 / 0 AT2G41830 1184 / 0.0 Uncharacterized protein (.1) Potri.006G052100 [exp] 556 / 0 AT2G41830 1110 / 0.0 Uncharacterized protein (.1) Potri.007G128000 [exp] 545 / 3e-178 AT1G05960 1014 / 0.0 ARM repeat superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029842 pacid=23159642 polypeptide=Lus10029842 locus=Lus10029842.g ID=Lus10029842.BGIv1.0 annot-version=v1.0 ATGGGTTTCATTTCTCGGAAGATTATCCCTTCTTGTGGCACGATGTGCGTGTGCTGCCCTGCAATGCGCTCCAGATCTCGCCAACCTGTTAAAAGATACA AGAAATTGCTTGCTGATGTTTTCCCCAAGTCTCCTGATGCTCCTCCAAATGACAGAAAGATCACAAAGTTATGTGAATATGCAGCCAAAAACCCAATTCG GATTCCCAAGATTGCCCAGTATCTTGAAGAAAGATGCTGCAAAGAACTGCGGAGCGGCCATACCAAGTTTATCAATGTTGCTGTGGAGGCTTACAATAAG TTGCTCTGCATTTGTAAGAACCAGATGGTATATTTTGCCACTAGCTTGTTGAATGTGGTCACAGAACTGCTAGACAAACTTAAACAAGAGGCTTTGGTGA TTCTTGGATGCCAGACTTTGACGAAGTTCATCTATAGCCAGGTTGATGGAACTTATGCTCATAGCATCGAAAAATATGCTCCTAGAATATGTACACTTGC ACGCAAGAGTGGGGAGGAGGGTAATAGTAGCCGTTTGAGGGCATCAAGCCTGCAGTGCCTCTCAGCCATGGTATGGTTCATGTCAGAGTTCTCGTATATT TTCCCTGCATTGGATGAGATTGTGCATTCCACCTTGGATAACTACGAGCCTGAATCTCCTATTGAAAATGATGGCGAGAGAGGGGAAGCTCACAATAATT GGCTGAATGAAGTTGTTAGAAGTGAGGGAAGAAGTACAGCTGTAGGAAATGACCCTAGCTCTATGGCCATTATCAGAGCACGGCCAGAAAAGAAAGATCC TTCTCTTTTGACTGGGGACGAAATTGAGCAACCAAGAGTGTGGGCACAAATTTGTATTCAAGGAATGGTGGATCTGGCAAAGGATAGTTCCACAATGCGA TGCGTATTGGATCCTATGTTTGTCCACTTTGACACTAGACATCTCTGGGCTCCTCAACAAGGACTTGCTCTGATAGTTTTGTCTGCCATGTCATATTTTC TGGAGAATTCAGGACATCAACAGTCAGTGTTATCTGCTGTTATCCGCCATTTAGATCACAAAAATGTTGCACACGATCCACTGCTCAAGTCTTATGTCAT ACAAGCTGCAACTAGTTTAGCTAGGCAACTTCGATCAGTTACAGTTCTGGCTGAAGTTGGATTTGTCAGTGACTTGTGTAGGCATTTGAGAAAAAGCCTT CAAGCCTCAGCTGAACCTTTAGGAGACCAGGAATTGAATTTGAATGTCTTGCTCCAAAACTCTATTGAAGATTGCTTACTTGAGATTGCCAAGGGGCTTG GTGATGCCAAACCTCTACTTGACCACATGGCAATGTCACTGGAGAAGCTACCATCCTGTGGAATTGTTGCTCGGGCAACCATTAGATCACTGATGATTCT TGCGCATGTGATCTCGTCGTCGTCAGTTTCTTCAACCAAGCAGACTTTCCCCGAATCGCTTCTTGTTCAACTTCTAAAAGCAATGCTGCATGCAAATGTT GAGGTGCGGGTTGAAGCACACCAGATTTTCACAGTTCTTCTCATTCCAAATGCTAGTTGTCTTGGACGGGAAGCTTCTGTTCGAACTAGTTACATCTGTG AACCAAGAAGATGGCGTTCTGGTACACCATCTACATTTGCTTCAATTTCTGCACTGCTCGAAAAGCTCCGGAAAGGGAAGGATGGGTCTGAAGTGGAAAT GCATGGAAATGGAGTTCAAGATGACTGCAAAGACAGAGACAACTCCGAAGAAGATTGGAAATATGGACGGGCTAGAAAGAACTCCCCAAACTTTTACAAG ATTAGTTCAATTATTGAGAGAACTACGGGGACACCAAGCTTGGCTGAGGCTGCTGAACCTTGTGCTTTGGAGCTAAATGAGGATCAGATATCACAGTTGC TTTCTGCCTTCTGGATGCAAGCCAGCCTTCCAGACAACACTCCTCCCAATCTGGAGGCGATTGCTCATTCCTTTACACTAACACTTATTTCTTCACAACT GAAGGAGACAAATGCAAACCTTGTGGTCCAGTTCTTTCAGCTTGCTCTCTCTGTTAGACAATTGTCCTTGGACTCTCATAATGGGATGTTACAGCCAGCA TGCAGAAGATCAGCTTTTGTTTTAGCAATGGGCATGTTAATGTTCACTGCCAAGACATATCAAGTTCCCGATTTGAATGACTTGCTCAAGCCGTTGCTCT CGGACAACGTTGATCCTTATTTGGGAATTAGTGATGATCTTCAAATATACGTTAAGCCCCAAGCCGATTTGAAAGAATTCGGATCATTCACAGATAACTC ATTGGCTCTGTCAGTGCTAACTGAGTTGCAGAGGAAAATATGTGAATCTGATACAGCTGTAATGAACAGCTTGGTTCTAAACCTATCAACAACCACCGAG ATGGACCCGGATGCAGTGGCCATGCAATTGTTGGAACCCTTCACACCTGATGACATGTTAATGTTTGGTTCACGATCAATGGGTGACCACAACCGGAAGC TTTCTCATTCAAAGGAATCACTTTCCTTTGACGAGGATCTTCCATCTAATGCAGTGGCCGAGGATGATGCCACTAGCGATGCATCAGTCTCGGACTTGTC ACGTTTCATCCCCAAAATTCCTTCATCTCCTTCTGTCTCGCACGTTATTAGCATCGGGCAGCTACTAGAATCCGCTCTTGAGGTAGCTGGTCAAGTGGCA GGAACATCTGTTTCCATGTCACCCCTCTCGTACGACTCGATGACGAAACAGTGTGAAGCTCTGGGGACAGTGACGAGAAAGAAGCTCTCGAATTGGTTGG CTCATGAGAATCAGCAATCTAAGGGAGCAGCTGACAAGTACTTCTTGCCACCTGTTGTGGAAAGTGGAATTCCTGCTGTGGCACCATGGCAGATGGGATT GGTGGAGGGGGAGATGATGAAGCAGGAGGGAATGGAGCAGTATTTGCCAATGAAGCTACCACCTGCAAGTCCTTATGATAATTTCCTGAAAGCGGCTGGA TGCTGA
AA sequence Show only first row Show all	>Lus10029842 pacid=23159642 polypeptide=Lus10029842 locus=Lus10029842.g ID=Lus10029842.BGIv1.0 annot-version=v1.0 MGFISRKIIPSCGTMCVCCPAMRSRSRQPVKRYKKLLADVFPKSPDAPPNDRKITKLCEYAAKNPIRIPKIAQYLEERCCKELRSGHTKFINVAVEAYNK LLCICKNQMVYFATSLLNVVTELLDKLKQEALVILGCQTLTKFIYSQVDGTYAHSIEKYAPRICTLARKSGEEGNSSRLRASSLQCLSAMVWFMSEFSYI FPALDEIVHSTLDNYEPESPIENDGERGEAHNNWLNEVVRSEGRSTAVGNDPSSMAIIRARPEKKDPSLLTGDEIEQPRVWAQICIQGMVDLAKDSSTMR CVLDPMFVHFDTRHLWAPQQGLALIVLSAMSYFLENSGHQQSVLSAVIRHLDHKNVAHDPLLKSYVIQAATSLARQLRSVTVLAEVGFVSDLCRHLRKSL QASAEPLGDQELNLNVLLQNSIEDCLLEIAKGLGDAKPLLDHMAMSLEKLPSCGIVARATIRSLMILAHVISSSSVSSTKQTFPESLLVQLLKAMLHANV EVRVEAHQIFTVLLIPNASCLGREASVRTSYICEPRRWRSGTPSTFASISALLEKLRKGKDGSEVEMHGNGVQDDCKDRDNSEEDWKYGRARKNSPNFYK ISSIIERTTGTPSLAEAAEPCALELNEDQISQLLSAFWMQASLPDNTPPNLEAIAHSFTLTLISSQLKETNANLVVQFFQLALSVRQLSLDSHNGMLQPA CRRSAFVLAMGMLMFTAKTYQVPDLNDLLKPLLSDNVDPYLGISDDLQIYVKPQADLKEFGSFTDNSLALSVLTELQRKICESDTAVMNSLVLNLSTTTE MDPDAVAMQLLEPFTPDDMLMFGSRSMGDHNRKLSHSKESLSFDEDLPSNAVAEDDATSDASVSDLSRFIPKIPSSPSVSHVISIGQLLESALEVAGQVA GTSVSMSPLSYDSMTKQCEALGTVTRKKLSNWLAHENQQSKGAADKYFLPPVVESGIPAVAPWQMGLVEGEMMKQEGMEQYLPMKLPPASPYDNFLKAAG C

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G26850			Uncharacterized protein (.1.2....		Lus10029842 [exp]	0	1
AT5G13960		SDG33, KYP, SUV...	SET DOMAIN PROTEIN 33, KRYPTON...		Lus10041515 [exp]	2.8	0.9534
AT5G26850			Uncharacterized protein (.1.2....		Lus10020697 [exp]	3.2	0.9510
AT3G51290			Protein of unknown function (D...		Lus10041885 [exp]	6.6	0.9450
AT5G25590			Protein of unknown function (D...		Lus10022116 [exp]	7.1	0.9449
AT5G27240			DNAJ heat shock N-terminal dom...		Lus10018975 [exp]	7.2	0.9304
AT2G37960			unknown protein		Lus10021116 [exp]	7.3	0.9494
AT3G22760	CPP	SOL1	Tesmin/TSO1-like CXC domain-co...		Lus10039358 [exp]	8.8	0.9410
AT3G19960		ATM1, ATATM	myosin 1 (.1.2)		Lus10040996 [exp]	11.5	0.9124
AT3G19960		ATM1, ATATM	myosin 1 (.1.2)		Lus10013443 [exp]	12.0	0.9054
AT3G56370			Leucine-rich repeat protein ki...		Lus10025223 [exp]	13.7	0.9383

Compare expression of checked genes

Lus10029842 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.