Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G56430 344 / 2e-118 ATNAS4 ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 4, nicotianamine synthase 4 (.1) AT1G09240 334 / 1e-114 ATNAS3 ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 3, nicotianamine synthase 3 (.1) AT5G04950 331 / 2e-113 ATNAS1 ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 1, nicotianamine synthase 1 (.1) AT5G56080 323 / 3e-110 ATNAS2 ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 2, nicotianamine synthase 2 (.1) AT4G26483 69 / 1e-14 nicotianamine synthases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020696 [exp] 600 / 0 AT1G56430 364 / 4e-126 ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 4, nicotianamine synthase 4 (.1) Lus10031416 [exp] 347 / 9e-120 AT1G56430 340 / 2e-117 ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 4, nicotianamine synthase 4 (.1) Lus10010917 [exp] 345 / 2e-119 AT1G56430 334 / 5e-115 ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 4, nicotianamine synthase 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G014300 [exp] 390 / 9e-137 AT1G09240 405 / 8e-143 ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 3, nicotianamine synthase 3 (.1) Potri.010G143100 [exp] 323 / 8e-111 AT1G09240 362 / 2e-126 ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 3, nicotianamine synthase 3 (.1) Potri.004G193400 [exp] 271 / 3e-90 AT5G04950 280 / 6e-94 ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 1, nicotianamine synthase 1 (.1) Potri.010G143133 [exp] 75 / 2e-16 AT1G56430 76 / 5e-17 ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 4, nicotianamine synthase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03059 [flax] [poplar] NAS Nicotianamine synthase protein
Representative CDS sequence Show only first row Show all	>Lus10029843 pacid=23159834 polypeptide=Lus10029843 locus=Lus10029843.g ID=Lus10029843.BGIv1.0 annot-version=v1.0 ATGGGAGACCTCCTAGTGAACAAAGTCTTCAAACTCTACGACCAGATCTCCAACCTCGAATCCCTCAAACCTTCCAAAGATGTCGACACCCTCTTCACCG AGCTAGTCCACACGTGCATGCCACCCTGCCCCATCGACGTCAACAACCTCTCAAACGAAGTCCAACTCATGAGGTCGAAACTCATCAACCTCTGCGGAAC AGCTGAGGGGCACCTCGAGTCACACTTCTCGACCCTATTGGGGTCAAATTACCAAAACCCCCTCCACCACCTCCACATATTCCCTTACTACCCCAACTAC CTCAAACTCAGCCTCCTCGAATTCACCCTCCTGAAACAGCACTTCCAGCCTGCTGCAGTCACCCTCCCCGCCAGGGTCGCCTTCGTCGGGTCGGGCCCGC TCCCCCTGACTTCTATCGTGCTGGCGACCCAACACCTGACCGAAGCCACTTTCCACAACTATGATGTGGATGCCTCTGCCAACGAGATGGCCGGCCGGCT GGTCTGGTCTGATCCGGACCTGTCCAGCCGGATGGTGTTCCGTACGGCCGACATCATGGATGTGGGCCGTGAGGAGTTGGAGGGATTCGATGTCGTGTTC CTGGCCGCTCTGGTCGGGATGGATAAGGAGATGAAGGTGAGGGTGGTTCGACACCTGGCGGAGAATATGGCTCCCGGGGGTGTTCTGATGGTGAGGAGTG CTCATGGTGCTAGAGGGTTCTTGTATCCGGTTGTGGATCCTAGTGATCTTCAAGGGTTTGATGTTCTTTCTGTGTTTCATCCGACCGATGAGGTGATTAA TTCGGTTGTCGTTGCTCGTAAACAAAAGGGTCCGATGATGCAGTTGATGATTGATCAACATCAGCAAAGTAGTTCGTTCATGATTCCGAATTGCAAGTGT TCGGAGATTGCGGCTTATAAGCAGCCTCATCACCATGGATGCATGATGATGGAGGAATTGACTGTTGAAGAGCAACTCTCCTGA
AA sequence Show only first row Show all	>Lus10029843 pacid=23159834 polypeptide=Lus10029843 locus=Lus10029843.g ID=Lus10029843.BGIv1.0 annot-version=v1.0 MGDLLVNKVFKLYDQISNLESLKPSKDVDTLFTELVHTCMPPCPIDVNNLSNEVQLMRSKLINLCGTAEGHLESHFSTLLGSNYQNPLHHLHIFPYYPNY LKLSLLEFTLLKQHFQPAAVTLPARVAFVGSGPLPLTSIVLATQHLTEATFHNYDVDASANEMAGRLVWSDPDLSSRMVFRTADIMDVGREELEGFDVVF LAALVGMDKEMKVRVVRHLAENMAPGGVLMVRSAHGARGFLYPVVDPSDLQGFDVLSVFHPTDEVINSVVVARKQKGPMMQLMIDQHQQSSSFMIPNCKC SEIAAYKQPHHHGCMMMEELTVEEQLS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G56430		ATNAS4	ARABIDOPSIS THALIANA NICOTIANA...		Lus10029843 [exp]	0	1
AT3G27030			unknown protein		Lus10041550 [exp]	5.2	0.7594
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10018595 [exp]	15.0	0.7261
AT1G73390			Endosomal targeting BRO1-like ...		Lus10042289 [exp]	15.2	0.7474
AT1G32560		AtLEA4-1	Late Embryogenesis Abundant 4-...		Lus10040088 [exp]	18.7	0.7322
AT3G20870		ZTP29	zinc transporter 29, ZIP metal...		Lus10031268 [exp]	19.4	0.7438
					Lus10037345 [exp]	20.8	0.7172
AT1G28220		ATPUP3	purine permease 3 (.1)		Lus10020950 [exp]	23.0	0.6745
					Lus10021106 [exp]	27.1	0.6533
AT3G14180	Trihelix	ASIL2	Arabidopsis 6B-interacting pr...		Lus10025404 [exp]	28.1	0.6842
AT4G14615			unknown protein		Lus10021896 [exp]	29.3	0.6604

Compare expression of checked genes

Lus10029843 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.