Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G56423 238 / 2e-78 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020695 [exp] 336 / 3e-117 AT1G56423 306 / 3e-105 unknown protein Lus10010918 [exp] 266 / 2e-90 AT1G56423 286 / 2e-98 unknown protein Lus10031415 [exp] 265 / 8e-90 AT1G56423 288 / 7e-99 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G008700 [exp] 270 / 9e-92 AT1G56423 283 / 1e-96 unknown protein Potri.005G017400 [exp] 265 / 2e-89 AT1G56423 297 / 9e-102 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029844 pacid=23159792 polypeptide=Lus10029844 locus=Lus10029844.g ID=Lus10029844.BGIv1.0 annot-version=v1.0 ATGATGGATTTCCAGAGCGGAAGACTACAACTTCTTGTTTTCATAATCGGGATCATCGGCCTCAGCCTCGTTGCTGAAAAATGCAGGCTACTCGTCGGAG AAGAATCATCATCGCAGAGCGGCAAGTTCACAATCTTTGACTGCCTCGACATGAGCACCGGAACACTAGCATGCACGGTGAAGGAAGGGGTGAAGCTATA TGTTTACAACATCAGATCTTCACACGTGGAAGCAGCAAGGAATATGGCGATCGAGCAAGCAATACACGATGCGATGCAGCAAGGGGTATCGGCTACAGAC GTAGCAAAGCAAGCACAAAAGGAAGGTGCAAAAGCTGCTAAGCTGGCTACTAAGAAAACCAAACGAATTGTAGGTCCTATCATCTCGTCGGGATGGGACT TCTTCGAAGCAGTGTACTATGGCGGCACCGTAACAGAAGGGTTTCTGAGGGGGACGGGGACCTTGTTCGGTACCTATGCAGGAGGGTTCTACGGGGAGCA AAGTATGGGACGAGTTGGGTACCTGGTGGGAAGTCAGTTGGGGAGTTGGGTTGGTGGGAGGATTGGGTTGATGGTGTATGATGTGGTGAATGGTGTGCAT TACTTGCTTAGTTTTGCTGAGGCTGTAGAGAGTGAGATTGAAGAAATTAAGGAAGCTGATGTTTCTGAGTCGTATGTGACTGCTGTTGAGGAGTACAGCA GTGCTTATGAATCTCCTCCTCCGTATGAGAGTTCAGAATCGGAATCAGAATTGGAATCGGAATCGGAATCCTCCATGTCCTGGTAA
AA sequence Show only first row Show all	>Lus10029844 pacid=23159792 polypeptide=Lus10029844 locus=Lus10029844.g ID=Lus10029844.BGIv1.0 annot-version=v1.0 MMDFQSGRLQLLVFIIGIIGLSLVAEKCRLLVGEESSSQSGKFTIFDCLDMSTGTLACTVKEGVKLYVYNIRSSHVEAARNMAIEQAIHDAMQQGVSATD VAKQAQKEGAKAAKLATKKTKRIVGPIISSGWDFFEAVYYGGTVTEGFLRGTGTLFGTYAGGFYGEQSMGRVGYLVGSQLGSWVGGRIGLMVYDVVNGVH YLLSFAEAVESEIEEIKEADVSESYVTAVEEYSSAYESPPPYESSESESELESESESSMSW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G56423			unknown protein		Lus10029844 [exp]	0	1
AT5G59890		ADF4, ATADF4	actin depolymerizing factor 4 ...		Lus10040307 [exp]	1.4	0.9014
AT5G08290		YLS8	YELLOW-LEAF-SPECIFIC GENE 8, m...		Lus10017390 [exp]	2.4	0.8988
AT3G53990			Adenine nucleotide alpha hydro...		Lus10021104 [exp]	2.4	0.8907
AT3G47300		SELT	SELT-like protein precursor (....		Lus10040658 [exp]	2.6	0.8900
AT5G07840		PIA1	phytochrome interacting ankyri...		Lus10018958 [exp]	3.5	0.9002
AT5G17060		ATARFB1B	ADP-ribosylation factor B1B (....		Lus10009571 [exp]	3.5	0.8985
AT2G43760			molybdopterin biosynthesis Moa...		Lus10026805 [exp]	3.9	0.8947
AT5G17060		ATARFB1B	ADP-ribosylation factor B1B (....		Lus10020392 [exp]	4.9	0.8851
AT1G26550			FKBP-like peptidyl-prolyl cis-...		Lus10019084 [exp]	5.3	0.8701
AT5G59890		ADF4, ATADF4	actin depolymerizing factor 4 ...		Lus10023428 [exp]	6.0	0.8840

Compare expression of checked genes

Lus10029844 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.