Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24100 160 / 4e-42 ASG1 ALTERED SEED GERMINATION 1, unknown protein AT4G30780 152 / 3e-38 unknown protein AT1G54300 107 / 3e-25 unknown protein AT3G05770 103 / 4e-23 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020694 [exp] 341 / 7e-107 AT2G24100 145 / 5e-38 ALTERED SEED GERMINATION 1, unknown protein Lus10010920 [exp] 193 / 5e-54 AT2G24100 184 / 8e-54 ALTERED SEED GERMINATION 1, unknown protein Lus10024257 [exp] 184 / 6e-54 ND / Lus10029846 [exp] 187 / 1e-50 AT2G24100 137 / 2e-35 ALTERED SEED GERMINATION 1, unknown protein Lus10035819 [exp] 161 / 3e-41 AT4G30780 514 / 3e-177 unknown protein Lus10036602 [exp] 157 / 4e-40 AT4G30780 511 / 5e-176 unknown protein Lus10041622 [exp] 144 / 4e-36 AT2G24100 351 / 1e-116 ALTERED SEED GERMINATION 1, unknown protein Lus10024097 [exp] 142 / 9e-36 AT2G24100 335 / 2e-110 ALTERED SEED GERMINATION 1, unknown protein Lus10024256 [exp] 108 / 1e-26 AT2G24100 59 / 3e-10 ALTERED SEED GERMINATION 1, unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G009000 [exp] 166 / 2e-43 AT2G24100 202 / 6e-59 ALTERED SEED GERMINATION 1, unknown protein Potri.006G180500 [exp] 157 / 3e-40 AT4G30780 503 / 2e-173 unknown protein Potri.003G185050 [exp] 155 / 5e-40 AT2G24100 392 / 2e-132 ALTERED SEED GERMINATION 1, unknown protein Potri.018G102800 [exp] 155 / 2e-39 AT4G30780 501 / 1e-172 unknown protein Potri.001G041800 [exp] 144 / 3e-36 AT2G24100 363 / 5e-121 ALTERED SEED GERMINATION 1, unknown protein Potri.005G014600 [exp] 141 / 4e-35 AT2G24100 167 / 5e-46 ALTERED SEED GERMINATION 1, unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029847 pacid=23159821 polypeptide=Lus10029847 locus=Lus10029847.g ID=Lus10029847.BGIv1.0 annot-version=v1.0 ATGGAGGGTACTTATCAGGAACATTTCGATATCGACATCGACAACTTTTTGTTCTGGACTGACAATGAAGCATCACAGCATAGCCAGAACCAGAATAGTC CATTCTTTCAAAATGAGAGTACTTCCAATTCCATTTCCATGAATCACTTACCTCATTACGATCCTGGTCAGGGTTCCAATCATCAGAATGTTGATTCCAT CGCATTGCCTCCTCCTCAGAATGAGCTCAATGACCAAGTTCCGGCAGAGGAGCTTCTCCAGGAAGTCCCACTTAGGTTGAATCTCGATAAATCCCCGGAC TTCGTAAGTTTGGTGGAAAGGAACTTGAATCCTGATCATCAACAGATTACTGGATTGAAACGGAAGTCGAGGCTCGATGATTATGGTTCCCAATTGGCGG AGGCGTCTAATCAGAAGTTGAAAGCTTCAACCATTCCGGCCTCTGACGAGAAGTTGAAAGCTTTAATCATTCCGAACACTGTGGTCAAGATCGGTTCTTG GGAGAGAGTTGATACAAAGGCAAAGTGTTACTTCACTAAAAAGAAGCTCTCGTGGCAAATCGTGGAAGGTGGGTTGAAAAAGAAGATCGAAATCTTATGG ACGAATATCATAGCCATCGATGCTTCCAAACCCGGTGTTCTCAATGTTGAGGTGGATGAATGTCCAATTTTCTTTGAAGATATGTATCCTGATCAGCCAA GAAAGCAAACCTTTTGGAAAATAATTCCAGATTTCACTGAAGGTCAAGCTTTGAAATACAGGAGGCATCAGATCACCTGTGATCGAGTCCGCCTCGACAA GGCATACCAGCTGCTTTTAAAATGCGACCAAAGGCTGCATAGGCTCAGCCGCATCCCATTTCCCAGCCAGGATAGTCCTTACTTCCCGGTCAACAGTGAG CTTAGTAGTAAAGAATTGCCCCGTCTTGAAAATGTGAGCTTGGTTCAGCTTCCGGACCTTCCCCTTAATGCAACGAGACCTCATAACCCAGTTCAGCTGG AAACAACACCTCACAACCCACTCGTTCAACTTCCCACCTTTGCTCGTAATGATCATAGTGGGCTTAGTAGTTTAGCGTGGTCACGTATTGAAAATCTCAA TCCGGTCGAACCCCCAAACCTAACTCCTAACCCAACAACATCTCATAACTCGGCTCAGCTTCCCAGTCTTCCTCCTCAACCAACAAGACCTCAGAACTTG CCGGTCCAGCTTCCTGACCTTGCTCCATTTCCAACAACATCCCAGGGGTACTGTGGTAATGATCACACTCCACATAGTGATGACAACAACTACAGTGATG ATCTTCTGGGAAATATTCCAGCCACTGTGCTCAGGATCGGTTCTTGGAAGAGAGTTGCTATCAAGGCTTCTGATTTAGTAGCGAAGTTTTGCTTCACTGA GAAGAAGTTGGTGTGGGAAATAGTGGAAGGTGGGTTGAAGAAGAAGATCGAAGTCCGGTGGTCGAATATCATAGCCATCAATGCTTCCGTTCCTAATGTT CTCGACGTTGTGTTGCATGAACGGCCGATTTTCTTTGAAGATACTAATCCTCAGCCCAGAAAGAACACCTTGTGGAAGATGGCATCAGATTTCACTGGAG GCCAAGCTTCGATATGCAGAAGGCATCAACTCATATGTTACCCAGGGCACCTTGACAAGCCATACCAACAACTTTTAAAACATGACCAAAGGTTGTTTAG ACTCAGCCTCAACCCATTTCCCAACCTTGAAAGTCCTGACTTCCCGTTTCACACTCGGGTCAGTAGTCTAGTGTTGTCCCATCTCGAAAATATGAACCAG GTTCGTGTCATTCCTCCTAAATCCACAACACCTCAGAACCCGCCGGTTCAGCTTCCTCACGTTCCTCCATACCCAACAACACCACATGGGTACTGTGGTA ATGATCACACACGGCTTAGTAGTTCTCGTACTGAAAGTCTAACCCCGCCGGTCCAGCTACCCAACCCAACAACTCCTCAGAACCCACCGGTCCAGCTACC CAACCCAACAACTCCTCAGAACCCGCCGGTCCAGCTACCCAACCCAACAACTCCTCAGAACCCGCCGGTCCAGCTACCCAACCCAACAACTCCTCAGAAC CCGCCGGTCCAGCTACCCAACCCAACAACTCCTCAGAACCCGCCGGTTCAGCTTTCGAACCTTGCTCCTCATTCGACAATACCTCAGGGGTACTTTGGTA ATAATAGCAACAGACTGCTTGCTCCAACTGGCAGAGAAGAAGCTGAATATGACCCCAAAAGGATGGCGGAATTTGGTTATACCTCTGAAGCAACAAACAA CGGGTACAATGATATTCTAGGAAGTATTGGTATTGGAATAAGTAGTGGTCAACCATTGAGGAATTTCGATGATGGAGGAAATCTAAGCCAGGTGGTTTAT GGATCTGGATTAGGAGGAGATCAGTTGTATAATAACCACCACCATCAGCAAGGTTTCCTCCCAGATACTACTACGGGTATTGTTGCAGATGGAAACGTTG GAGAGATGTATCAACATGATCATCAAGTTTCAGGCAGTTTTGGAGATCCTTATCCTCTCGGGATTGATCCGATGCATGGTATTGGAATGAGTACTAGTCA ACCATTGAGGAATTTTGACAATGGAGGAGATCTGGCTTTGTATAATAACCAACAACAACAAGAGCAACAAGGTTTCGTCTCGGATACTACTACTACTACT GCTGCTGCTACTATGGTTGCGGATGGAAACGGTGGAGAGGTTTCGGATATTTTTGGAGATCCTTATCCTCTCGAGATTGATCCGGGATTATTCTCATCAC TTTTTGATCCTGTTAACGACATTGAAAGAGTGATGCCGTGA
AA sequence Show only first row Show all	>Lus10029847 pacid=23159821 polypeptide=Lus10029847 locus=Lus10029847.g ID=Lus10029847.BGIv1.0 annot-version=v1.0 MEGTYQEHFDIDIDNFLFWTDNEASQHSQNQNSPFFQNESTSNSISMNHLPHYDPGQGSNHQNVDSIALPPPQNELNDQVPAEELLQEVPLRLNLDKSPD FVSLVERNLNPDHQQITGLKRKSRLDDYGSQLAEASNQKLKASTIPASDEKLKALIIPNTVVKIGSWERVDTKAKCYFTKKKLSWQIVEGGLKKKIEILW TNIIAIDASKPGVLNVEVDECPIFFEDMYPDQPRKQTFWKIIPDFTEGQALKYRRHQITCDRVRLDKAYQLLLKCDQRLHRLSRIPFPSQDSPYFPVNSE LSSKELPRLENVSLVQLPDLPLNATRPHNPVQLETTPHNPLVQLPTFARNDHSGLSSLAWSRIENLNPVEPPNLTPNPTTSHNSAQLPSLPPQPTRPQNL PVQLPDLAPFPTTSQGYCGNDHTPHSDDNNYSDDLLGNIPATVLRIGSWKRVAIKASDLVAKFCFTEKKLVWEIVEGGLKKKIEVRWSNIIAINASVPNV LDVVLHERPIFFEDTNPQPRKNTLWKMASDFTGGQASICRRHQLICYPGHLDKPYQQLLKHDQRLFRLSLNPFPNLESPDFPFHTRVSSLVLSHLENMNQ VRVIPPKSTTPQNPPVQLPHVPPYPTTPHGYCGNDHTRLSSSRTESLTPPVQLPNPTTPQNPPVQLPNPTTPQNPPVQLPNPTTPQNPPVQLPNPTTPQN PPVQLPNPTTPQNPPVQLSNLAPHSTIPQGYFGNNSNRLLAPTGREEAEYDPKRMAEFGYTSEATNNGYNDILGSIGIGISSGQPLRNFDDGGNLSQVVY GSGLGGDQLYNNHHHQQGFLPDTTTGIVADGNVGEMYQHDHQVSGSFGDPYPLGIDPMHGIGMSTSQPLRNFDNGGDLALYNNQQQQEQQGFVSDTTTTT AAATMVADGNGGEVSDIFGDPYPLEIDPGLFSSLFDPVNDIERVMP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G24100		ASG1	ALTERED SEED GERMINATION 1, un...		Lus10029847 [exp]	0	1
					Lus10017627 [exp]	1.0	0.9184
AT5G64300		ATGCH, ATRIBA1,...	RED FLUORESCENT IN DARKNESS 1,...		Lus10007013 [exp]	3.9	0.8538
AT3G05950			RmlC-like cupins superfamily p...		Lus10023351 [exp]	6.0	0.8786
AT5G04885			Glycosyl hydrolase family prot...		Lus10008434 [exp]	6.8	0.7508
					Lus10003818 [exp]	7.1	0.6422
AT1G17930			Aminotransferase-like, plant m...		Lus10031075 [exp]	7.3	0.8786
AT1G02335		GL22	germin-like protein subfamily ...		Lus10004856 [exp]	8.5	0.8786
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Lus10033189 [exp]	9.5	0.8786
AT1G20140		ASK4	SKP1-like 4 (.1)		Lus10002803 [exp]	10.0	0.7623
AT2G28630		KCS12	3-ketoacyl-CoA synthase 12 (.1...		Lus10033628 [exp]	10.4	0.8786

Compare expression of checked genes

Lus10029847 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.