Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G56345 321 / 6e-109 Pseudouridine synthase family protein (.1) AT1G76050 66 / 8e-12 Pseudouridine synthase family protein (.1.2) AT3G19440 51 / 6e-07 Pseudouridine synthase family protein (.1) AT3G52260 49 / 3e-06 Pseudouridine synthase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020693 [exp] 358 / 2e-125 AT1G56345 256 / 6e-86 Pseudouridine synthase family protein (.1) Lus10005619 [exp] 66 / 2e-11 AT1G76040 773 / 0.0 calcium-dependent protein kinase 29 (.1.2) Lus10017250 [exp] 64 / 8e-11 AT1G76050 531 / 0.0 Pseudouridine synthase family protein (.1.2) Lus10022437 [exp] 50 / 2e-06 AT5G51140 505 / 1e-177 Pseudouridine synthase family protein (.1.2) Lus10023503 [exp] 45 / 4e-05 AT3G52260 498 / 6e-178 Pseudouridine synthase family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G009300 [exp] 384 / 4e-133 AT1G56345 333 / 9e-114 Pseudouridine synthase family protein (.1) Potri.002G016800 [exp] 70 / 4e-13 AT1G76050 504 / 1e-178 Pseudouridine synthase family protein (.1.2) Potri.008G042000 [exp] 59 / 1e-09 AT3G52260 494 / 5e-176 Pseudouridine synthase family protein (.1.2.3) Potri.015G101300 [exp] 48 / 7e-06 AT5G51140 512 / 0.0 Pseudouridine synthase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0649 [flax] [poplar] PseudoU_synth PF00849 [flax] [poplar] PseudoU_synth_2 RNA pseudouridylate synthase
Representative CDS sequence Show only first row Show all	>Lus10029848 pacid=23159788 polypeptide=Lus10029848 locus=Lus10029848.g ID=Lus10029848.BGIv1.0 annot-version=v1.0 ATGAGTTCCATCTTGCTCCCCGCAGAAACCTTCTTCTTCTCCTCCACCAGAAAAACCCTCGTCTCGTCGGCTCTACGCAGCATCACCGCCGTCAAAATGT CAACTTTCATCGACCATCCCGAACCCAGCCCTAATTCAATCCTCCTCCAAGTAGATTACCCTAAACCTCTATCCCCTCCACTTCCCGCCATCTCCAAAGA GATAGAGCTAGCCAGAGCCATGTCCGCCTCTTCAAGGTCAAGCCTATTCTCTCTATCATCATCCCACGTCTTGTACGAAGATCAATGGCTCATTGCCGTC AATAAACCCCAAGGCATTTACTGCGAATCCGTTCTGGAATCCGTCCCATCCTTCATTGTGAATTCCAGTCCTGTTGAATCGGATGTTTCGGTTTCGGGTA AAACACCGGAGATCCACCTTGCGAATAGGCTTGATCGGGACACCAGCGGAGTGATGGTCATCACAAAGTCTCACAAAGTGGCTGCCAAGCTAGTCAAGGC GTTTACTGATCACAAGATTAGAAAGACTTACATTGCATTATGCATTGGTTCCTCTCCGGATTGGAATAGGATTACCGTGAAATCGGGTCACGGTCGGTCG AAATTCGGGGCGTGGCGTGTGTATGCAGCTTCGGATGTGGGTCGGAGCCTTCCGGGAGGATCCTCCGTGAGGGAGATGGAGACTTCATTTGAGGTCGTGT CTGTGAATGGGAGTAAGAGAGTGTTGAAAGAGGAGGAATGTGGGGAGACTGTGGTGGTGGAGGAGAAATCATTGATATGTGCAGATGAAAAACAGGATGA GATATTGGTTAGAGCGTTTCCTAGGACTGGAAGGACGCATCAAATTCGGTTGCATTGTCAGTATCTCGGGTTGTCTATAAGGGGTGATTTGAAATATGAA GGTGTTCATGAGTGGGAAGGGGAAAAGTGTTGTGGACATCAACTCCACGCTGAGAGCTTGTCTTTTGAACATCCTGTCACTGGTCCTTCCCTCAAGTTCG ATGCCCCTTTGCCTTCTTGGGCGATCCAGGTTTCGCCTGAATAA
AA sequence Show only first row Show all	>Lus10029848 pacid=23159788 polypeptide=Lus10029848 locus=Lus10029848.g ID=Lus10029848.BGIv1.0 annot-version=v1.0 MSSILLPAETFFFSSTRKTLVSSALRSITAVKMSTFIDHPEPSPNSILLQVDYPKPLSPPLPAISKEIELARAMSASSRSSLFSLSSSHVLYEDQWLIAV NKPQGIYCESVLESVPSFIVNSSPVESDVSVSGKTPEIHLANRLDRDTSGVMVITKSHKVAAKLVKAFTDHKIRKTYIALCIGSSPDWNRITVKSGHGRS KFGAWRVYAASDVGRSLPGGSSVREMETSFEVVSVNGSKRVLKEEECGETVVVEEKSLICADEKQDEILVRAFPRTGRTHQIRLHCQYLGLSIRGDLKYE GVHEWEGEKCCGHQLHAESLSFEHPVTGPSLKFDAPLPSWAIQVSPE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G56345			Pseudouridine synthase family ...		Lus10029848 [exp]	0	1
AT3G10120			unknown protein		Lus10017035 [exp]	4.8	0.9056
AT5G08300			Succinyl-CoA ligase, alpha sub...		Lus10013440 [exp]	17.5	0.8920
AT1G10580			Transducin/WD40 repeat-like su...		Lus10030620 [exp]	23.0	0.8909
AT5G40490			RNA-binding (RRM/RBD/RNP motif...		Lus10014562 [exp]	24.3	0.8895
AT2G11890			adenylate cyclases (.1.2)		Lus10008820 [exp]	29.0	0.8870
AT5G47030			ATPase, F1 complex, delta/epsi...		Lus10001082 [exp]	32.7	0.8806
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10021051 [exp]	40.3	0.8870
AT4G31200			SWAP (Suppressor-of-White-APri...		Lus10016927 [exp]	42.3	0.8780
AT5G06540			Pentatricopeptide repeat (PPR)...		Lus10029344 [exp]	50.5	0.8655
AT1G76810			eukaryotic translation initiat...		Lus10030500 [exp]	52.2	0.8711

Compare expression of checked genes

Lus10029848 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.