Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47430 419 / 4e-127 CKI1 CYTOKININ-INDEPENDENT 1, Signal transduction histidine kinase (.1) AT3G62550 138 / 2e-37 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) AT2G17820 124 / 3e-28 AHK1, ATHK1 histidine kinase 1 (.1) AT3G11930 110 / 3e-27 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2.3.4) AT2G47710 106 / 2e-26 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) AT3G58450 103 / 6e-25 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) AT1G09740 102 / 7e-25 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) AT1G68300 94 / 8e-22 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) AT1G27320 84 / 4e-16 AHK3 histidine kinase 3 (.1) AT5G35750 82 / 3e-15 AHK2 histidine kinase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031600 [exp] 376 / 8e-112 AT2G47430 624 / 0.0 CYTOKININ-INDEPENDENT 1, Signal transduction histidine kinase (.1) Lus10033746 [exp] 373 / 7e-111 AT2G47430 615 / 0.0 CYTOKININ-INDEPENDENT 1, Signal transduction histidine kinase (.1) Lus10031985 [exp] 381 / 9e-111 AT5G63890 752 / 0.0 HISTIDINE BIOSYNTHESIS 8, histidinol dehydrogenase (.1.2) Lus10029850 [exp] 296 / 3e-92 AT3G62550 140 / 5e-42 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Lus10035113 [exp] 224 / 9e-62 AT2G47430 400 / 1e-125 CYTOKININ-INDEPENDENT 1, Signal transduction histidine kinase (.1) Lus10025033 [exp] 136 / 4e-36 AT3G62550 186 / 1e-60 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Lus10010013 [exp] 131 / 1e-34 AT3G62550 184 / 9e-60 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Lus10041436 [exp] 126 / 3e-33 AT1G68300 159 / 2e-50 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Lus10034337 [exp] 120 / 5e-31 AT1G68300 164 / 2e-52 Adenine nucleotide alpha hydrolases-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G009700 [exp] 606 / 0 AT2G47430 572 / 0.0 CYTOKININ-INDEPENDENT 1, Signal transduction histidine kinase (.1) Potri.008G191100 [exp] 372 / 4e-110 AT2G47430 746 / 0.0 CYTOKININ-INDEPENDENT 1, Signal transduction histidine kinase (.1) Potri.014G121500 [exp] 369 / 9e-109 AT2G47430 753 / 0.0 CYTOKININ-INDEPENDENT 1, Signal transduction histidine kinase (.1) Potri.013G009800 [exp] 208 / 8e-62 AT3G62550 172 / 2e-55 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Potri.005G015200 [exp] 181 / 3e-52 AT3G62550 156 / 4e-49 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Potri.002G196700 [exp] 147 / 3e-40 AT3G62550 196 / 6e-65 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Potri.014G122000 [exp] 145 / 1e-39 AT3G62550 195 / 1e-64 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Potri.010G123200 [exp] 120 / 2e-31 AT1G68300 173 / 5e-56 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Potri.002G104700 [exp] 119 / 1e-30 AT1G09740 251 / 2e-86 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Potri.008G121900 [exp] 115 / 3e-29 AT1G68300 188 / 5e-62 Adenine nucleotide alpha hydrolases-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0025 [flax] [poplar] His_Kinase_A PF00512 [flax] [poplar] HisKA His Kinase A (phospho-acceptor) domain CL0304 [flax] [poplar] CheY PF00072 [flax] [poplar] Response_reg Response regulator receiver domain CL0025 [flax] [poplar] His_Kinase_A PF02518 [flax] [poplar] HATPase_c Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CL0039 [flax] [poplar] HUP PF00582 [flax] [poplar] Usp Universal stress protein family
Representative CDS sequence Show only first row Show all	>Lus10029849 pacid=23159818 polypeptide=Lus10029849 locus=Lus10029849.g ID=Lus10029849.BGIv1.0 annot-version=v1.0 ATGGAAACAGAAACAATCGCCCCCGCGACGTTGGTAGATCAACAGCAGAAGAAGAGAGTGATATTCCTTGTGGCGGTGGACGAGAGCGAGGAAAGCCTGC ACGCTCTCTCTTGGTTCCTCAACAATACTCTGCCCTCAGCTTCCTCCTCCGACCACCCACCAACTCTCGTCCTTCTATACGTCAAGCTCACACCTTCTCC GCCTCTCTTCTTCACCCCACACGGGTATATGTTTTCACCGGAAGTAATGGCGACGGTGAACCAGTACAAGAACGAGGTTGCCGAATGTGTAATGGAGAAG GCCAAAAGGGTTTGCAAGGAAGCAGTTAATGACAAGGTTAAGGTGGAGACTGTCATAGAAAGAGGGGATGCAAGGGATGTTATATGCCAGGTTGCTGATA AGCTCTCCGTTGATCTTCTTGTCATGGGCAGCCATGGCTACGGCCCAATCAAGAGGGCGTTTCTGGGGAGCGTAAGCAACCATTGTGCTCAGAATGTGAA GTGTCCAGTTCTTATTATCAAGAGACCCAAGATCCAATCCAACTCTCTCGGTGTTGTCGGCACGATTGTTTTGATCAAGTCATGCCTTCTTACCAACACG GGCGCAGTCAACGCTAACTCGAAGATGACCGGAGAGAGCTACACGTTCTACTCCGCAATCGAAAACTCCGGCAGCCATATCTTCCCCGGCAAGGAAACCA CCGCCAATTTAGCCACTCTGCTCGCTTCATCCTTCGTCAAAAGCAACGAGGATTCTCTTCCTTCCTTCGCCAACGTTATGAAAAACGTATCGCCGAAACT GTTCCTAGCAATGTCGATAATTCCTAACCTATCCCAAGCGACCTTCGCAACCAGAGACTGCTTGTTCTTCTCCTACTTTAGAAAAGACTATGGAACTTTC GCTGTATACTCCAACACTTCGTTCTCTCCCGTTTGGTACACCCAGCCGGTGAACGAAGATACCGGAGAGCTATACGGTGTTGCTTTGGAATCCAATTCCA CGCTCTCCTCGAATTCCAGCTGGTTCCTGAATGGTCTGGAAACGAACGATGTCGTTTCCTCCGTGAGGACCAGCTGGAACAGAGATCGTTTGTTCCTAAG CACGGTTTCCGTGCACGGAAAGGGTATGGTTTCTCTCGGGTACCCGATCCAAGTCGTCGCCGATCAGTTCAGCGCGCTGAATAATCAGCGGCTGCATTTG GGGATGGCTACGGTGGAGGAGAGCCAAGTGATTCTTCCGCCAACGGTTGTCGAAATCGAGAAGTACTACACTGGCGGGGTATTGACGGTTAGGGGGATTG GAGGAGGTGGAAGGAGTGTTAATTTGACATGTGACTCCGCCGGCTCCGCTAGGAGGTCCCCTCCGGAGACGGTCGACGGAACAGGCTGCAGGTTTTACTG CTCCACCCTCAAAATTGGTGGAGTAGATTTGGTTTACATAGTCGAATTCCATGGCATTACAGTGATGAACTACCAGGAATCGAATGTATTAGATGTGGTC TTGTACGGTTTACTGGTGCTCCCCTTTACCGCATTGGTCTGGAAGAAGAAAGAATCAACACACAGGGAGCAACATCTATGCGCTTCACTGATCAAGCAGA CGGAAGCAACGCAGCAAGCCGAGCGCAAGAGCATGAACAAGAACAGGATTTTCGCGGGCATCAGCCACGACGTTCGTAACGCAATCGCTCAACTCGTCGC ATTAACCGAGTCCTGTAAAGATGATGATGCCAGCAGTCTGCAGAAAATCGAGCATTGCGCTTACGATGCTCTAGGCATTTTGGACTCGGTGCTCGACATC AACAGGATCGAATCAGGGAAACTACTGCTGAAGAATGAAGACTTCAACTTAGCCAAGCTAGTGGAAGAAGTGGTGGACAGATTCTATGACTTGGGGAACA AGAAAGGTGTGGACGTGGTGTTCGATCCGTCTCATGACTTTATGATGAAGTCGAGGCTTGTACGGGGCGATCCAACGAGGTTGACACAGATACTGTCGAA CTTGCTAAGCAATGCCATCAAGTTTACATCGGAAGGGCATGTAACGGTTCGTGCTATGGTCAAGAAGAGGAACTTCGGCAGGGATATCATTGCTTATAAC AGGAGGTTTACTTGCTGGAAGGCATTTTGGAGATTGTGTGAGAAGAGCAATGGGGATAGTGACAACGATGTTATTAATACCCTTCTTGAAGGGGTTGAGG AGAATCCGGATGAAGTGGAGTTCGAGTTCGAGGTTGATGATACGGGGAAAGGTATCCCGAAAGACGAGCAGAAGTCAGTGTTCGAAGACTACATCCAAGC TAGAAACAATGTTGCTTGTTCCGACTCGGGAGGAGGGTACGGCTTGGGACTTGGCAATGTTCAGTCGTTGGTGCGGTTGATGAAGGGAGAGCTACAGATT GTTGAGAAAGAACAAGAGGAGAAAGGGACTTGCTTTAGATTCAATGTTTTTCTCTCCATGTCCAATACTACTGCAGTGGAAGCAGAAGAAGGCCAGCAGC AACAGAAACCCACTTTCCGACCATCTTTCAAATCGGAAGATTCTCAAGTAATGATCTTGATCGAAGGGGAAGAGAGGAGGAAGGTGTTGAAGAAGTTCAT CGAGAGCATGAACGTAAAAGCGAGAATCATCGACCAGTCAAGAAGCTTGAAGCAAGAGCTAGAGAGGATCAAGACAAAGATCCAAAATCCTCCCTCAACT CTCTCCCAACTACTGATCAGCAGCAGCCACTCTGTTTGTTCTATAAGTAGTACTGATCATGCACCGAAAGTCGTTTTGTTGATCATAGATGTCAATTACT ACAGCGAAATTGTTCGTGATTGCTTGCACGAGTACTTCAAGACAGGGACCGACAATGGCTCCTCGTGGAAGGTCGTTTGGTTACACGAGATACAGCAGGC TGGAGTAGACCATGGATTGCGAGAAACCAAGTATGATTGCTTGGTGCACAAGCCATTCCATGGTTCCCGTGTCATGCAAGTTTTTTCACTGCTTCCCGGG AAGGGCACCACGTTACCAAGCACTGCTCCCGATGCTACTACTACTCCGGTGGTGAGATTTCGAAGGGAATTCTGTATTAGCTCCAACTGTTATACGATTG ACCTGCGTGACACTGACAATGACTCGGTTTCAAGCCATCGGGAGGAGGTTGTGTCCGTGAATGGTCATGATATGTTGCTGCCGTTGAAGGGGAAACGGGT TTTGATTGTGGACGATAATGAGCTGATGAGGGAAGTGAATGCTCGGAGGATGAGTAAGTTAGGAGCCGAAAGTGTCGAAGTCTGTGGAAACGGGAAGGAG GCATTGGATAGAGTGTCAACCGCGTTGAGAGGGTCTCAGAGCGATCTTCTCCCCTATGACTGCATTTTCATGGATGGCGAGATGCCAGAAATGGATGGGT ACGAGGCGACGAGAATGATAAGGGAGGAGGAAAGGAGGAATGGAGAAGGGAAGATGATGGGAATAGTAGCCGTAACAGGGCACTCAGATGCAGACGAAAT GACGAAGAGCTTGGAAGCTGGGATGGACTTCCATTTGACGAAGCCATTAAAAGAGAATGAGGTGGTTGATGCTGTAAGAAAGCTTGATGCTAAGCATGCT ATTTGTTAG
AA sequence Show only first row Show all	>Lus10029849 pacid=23159818 polypeptide=Lus10029849 locus=Lus10029849.g ID=Lus10029849.BGIv1.0 annot-version=v1.0 METETIAPATLVDQQQKKRVIFLVAVDESEESLHALSWFLNNTLPSASSSDHPPTLVLLYVKLTPSPPLFFTPHGYMFSPEVMATVNQYKNEVAECVMEK AKRVCKEAVNDKVKVETVIERGDARDVICQVADKLSVDLLVMGSHGYGPIKRAFLGSVSNHCAQNVKCPVLIIKRPKIQSNSLGVVGTIVLIKSCLLTNT GAVNANSKMTGESYTFYSAIENSGSHIFPGKETTANLATLLASSFVKSNEDSLPSFANVMKNVSPKLFLAMSIIPNLSQATFATRDCLFFSYFRKDYGTF AVYSNTSFSPVWYTQPVNEDTGELYGVALESNSTLSSNSSWFLNGLETNDVVSSVRTSWNRDRLFLSTVSVHGKGMVSLGYPIQVVADQFSALNNQRLHL GMATVEESQVILPPTVVEIEKYYTGGVLTVRGIGGGGRSVNLTCDSAGSARRSPPETVDGTGCRFYCSTLKIGGVDLVYIVEFHGITVMNYQESNVLDVV LYGLLVLPFTALVWKKKESTHREQHLCASLIKQTEATQQAERKSMNKNRIFAGISHDVRNAIAQLVALTESCKDDDASSLQKIEHCAYDALGILDSVLDI NRIESGKLLLKNEDFNLAKLVEEVVDRFYDLGNKKGVDVVFDPSHDFMMKSRLVRGDPTRLTQILSNLLSNAIKFTSEGHVTVRAMVKKRNFGRDIIAYN RRFTCWKAFWRLCEKSNGDSDNDVINTLLEGVEENPDEVEFEFEVDDTGKGIPKDEQKSVFEDYIQARNNVACSDSGGGYGLGLGNVQSLVRLMKGELQI VEKEQEEKGTCFRFNVFLSMSNTTAVEAEEGQQQQKPTFRPSFKSEDSQVMILIEGEERRKVLKKFIESMNVKARIIDQSRSLKQELERIKTKIQNPPST LSQLLISSSHSVCSISSTDHAPKVVLLIIDVNYYSEIVRDCLHEYFKTGTDNGSSWKVVWLHEIQQAGVDHGLRETKYDCLVHKPFHGSRVMQVFSLLPG KGTTLPSTAPDATTTPVVRFRREFCISSNCYTIDLRDTDNDSVSSHREEVVSVNGHDMLLPLKGKRVLIVDDNELMREVNARRMSKLGAESVEVCGNGKE ALDRVSTALRGSQSDLLPYDCIFMDGEMPEMDGYEATRMIREEERRNGEGKMMGIVAVTGHSDADEMTKSLEAGMDFHLTKPLKENEVVDAVRKLDAKHA IC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G47430		CKI1	CYTOKININ-INDEPENDENT 1, Signa...		Lus10029849 [exp]	0	1
AT5G54960		PDC2	pyruvate decarboxylase-2 (.1)		Lus10005048 [exp]	1.0	0.9892
AT1G77120		ADH1, ATADH, AT...	ARABIDOPSIS THALIANA ALCOHOL D...		Lus10029759 [exp]	2.0	0.9880
AT4G33070			Thiamine pyrophosphate depende...		Lus10015291 [exp]	3.2	0.9751
					Lus10002596 [exp]	4.2	0.9852
AT5G54960		PDC2	pyruvate decarboxylase-2 (.1)		Lus10003384 [exp]	5.7	0.9639
AT1G72280		AERO1	endoplasmic reticulum oxidored...		Lus10038515 [exp]	7.5	0.9721
AT1G77120		ADH1, ATADH, AT...	ARABIDOPSIS THALIANA ALCOHOL D...		Lus10010506 [exp]	7.9	0.9715
AT2G30490		REF3, CYP73A5, ...	REDUCED EPRDERMAL FLUORESCENCE...		Lus10027598 [exp]	8.2	0.9774
					Lus10018421 [exp]	9.5	0.9736
AT5G54960		PDC2	pyruvate decarboxylase-2 (.1)		Lus10027820 [exp]	10.6	0.9653

Compare expression of checked genes

Lus10029849 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.