Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62550 140 / 8e-42 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) AT3G58450 114 / 3e-31 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) AT2G47710 112 / 5e-31 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) AT3G11930 113 / 8e-31 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2.3.4) AT1G09740 106 / 2e-28 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) AT1G68300 96 / 2e-24 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) AT1G11360 75 / 7e-16 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2.3.4) AT5G14680 67 / 1e-13 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) AT3G01520 65 / 1e-12 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) AT3G17020 63 / 4e-12 Adenine nucleotide alpha hydrolases-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029849 [exp] 296 / 7e-93 AT2G47430 489 / 2e-153 CYTOKININ-INDEPENDENT 1, Signal transduction histidine kinase (.1) Lus10025033 [exp] 124 / 4e-35 AT3G62550 186 / 1e-60 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Lus10041436 [exp] 120 / 5e-34 AT1G68300 159 / 2e-50 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Lus10010013 [exp] 120 / 2e-33 AT3G62550 184 / 9e-60 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Lus10034337 [exp] 117 / 1e-32 AT1G68300 164 / 2e-52 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Lus10009272 [exp] 115 / 7e-32 AT1G09740 227 / 6e-77 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Lus10006701 [exp] 112 / 6e-31 AT2G47710 218 / 1e-73 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Lus10007043 [exp] 111 / 2e-30 AT2G47710 214 / 2e-72 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Lus10029310 [exp] 93 / 6e-23 AT3G11930 197 / 2e-64 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G009800 [exp] 209 / 1e-68 AT3G62550 172 / 2e-55 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Potri.005G015200 [exp] 184 / 7e-59 AT3G62550 156 / 4e-49 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Potri.002G196700 [exp] 153 / 1e-46 AT3G62550 196 / 6e-65 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Potri.014G122000 [exp] 145 / 1e-43 AT3G62550 195 / 1e-64 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Potri.010G123200 [exp] 124 / 2e-35 AT1G68300 173 / 5e-56 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Potri.002G104700 [exp] 118 / 5e-33 AT1G09740 251 / 2e-86 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Potri.008G121900 [exp] 117 / 9e-33 AT1G68300 188 / 5e-62 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Potri.016G064000 [exp] 116 / 5e-32 AT3G11930 214 / 4e-71 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2.3.4) Potri.014G130100 [exp] 112 / 9e-31 AT2G47710 234 / 4e-80 Adenine nucleotide alpha hydrolases-like superfamily protein (.1) Potri.006G198200 [exp] 109 / 2e-29 AT3G11930 209 / 9e-69 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [flax] [poplar] HUP PF00582 [flax] [poplar] Usp Universal stress protein family
Representative CDS sequence Show only first row Show all	>Lus10029850 pacid=23159733 polypeptide=Lus10029850 locus=Lus10029850.g ID=Lus10029850.BGIv1.0 annot-version=v1.0 ATGGAAGCAGCAGCAACAATGGCTCCGAAGAGGAAGATATTCCTGGTGGCAGTGGACGAGAGCAAGGAAAGCATGCACGCTCTCTCATGGTTCCTCAACA ATACTCTGCCTCCTCCGGCTCCCTCCGATCACCCATTGACTCTCGTCCTTTTGTACGTCAAGCCTTCACCGCCACTCTACTTCACTCCGGACGGGTATAT GTTTTCGCCGGAAGTAACGAAGTCGATGAACGAGTACAAGAACAGTGTTGCAGAGTGTATAATGGAAAAGGCCAAAAGGGTTTGCAAGGAAGCAGTCAAT GACAAGGTTAAGGTGGAGACGATGATAGAAAGAGGGGATGCAAGGGATGTCATATGCGAGGTTGTTGCTAAGCTCTCCGTTGATCTTCTTGTGATGGGCA GCCATGGCTACGGCCCAATCAAGAGGGCGTTTCTGGGGAGCGTGAGCAATCATTGTGCTCAGAATGTGAAGTGTCCAATTCTCATTATCAAGACACCCAA GATCAAATCCAACTCTGCTGACGCCTCGTCATTTCCGTTAATGAGCCAAGATCCAAAAACAATCGATCCAAGGACAATAGATGCAAGGACTATAGATCCA AGGACAATCGATGCAATGACTATAGATCCAAGTACCATAGATGCAATGACTATAGATCCAAGGGCAACTAATCCAATGTCATCAACCGATCCAAGGACAA CAGATCCCAAGACAATAGATCCAAGGACAACAGATCCATGGTAA
AA sequence Show only first row Show all	>Lus10029850 pacid=23159733 polypeptide=Lus10029850 locus=Lus10029850.g ID=Lus10029850.BGIv1.0 annot-version=v1.0 MEAAATMAPKRKIFLVAVDESKESMHALSWFLNNTLPPPAPSDHPLTLVLLYVKPSPPLYFTPDGYMFSPEVTKSMNEYKNSVAECIMEKAKRVCKEAVN DKVKVETMIERGDARDVICEVVAKLSVDLLVMGSHGYGPIKRAFLGSVSNHCAQNVKCPILIIKTPKIKSNSADASSFPLMSQDPKTIDPRTIDARTIDP RTIDAMTIDPSTIDAMTIDPRATNPMSSTDPRTTDPKTIDPRTTDPW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G62550			Adenine nucleotide alpha hydro...		Lus10029850 [exp]	0	1
AT1G77120		ADH1, ATADH, AT...	ARABIDOPSIS THALIANA ALCOHOL D...		Lus10010506 [exp]	2.0	0.9758
AT1G77120		ADH1, ATADH, AT...	ARABIDOPSIS THALIANA ALCOHOL D...		Lus10034042 [exp]	3.5	0.9743
AT1G58420			Uncharacterised conserved prot...		Lus10012496 [exp]	6.7	0.9550
AT5G56350			Pyruvate kinase family protein...		Lus10003439 [exp]	9.4	0.9515
AT2G30490		REF3, CYP73A5, ...	REDUCED EPRDERMAL FLUORESCENCE...		Lus10027598 [exp]	13.0	0.9621
AT3G07310			Protein of unknown function (D...		Lus10002342 [exp]	15.5	0.9550
AT3G46510		ATPUB13	ARABIDOPSIS THALIANA PLANT U-B...		Lus10007511 [exp]	16.7	0.9558
AT1G77120		ADH1, ATADH, AT...	ARABIDOPSIS THALIANA ALCOHOL D...		Lus10029759 [exp]	20.8	0.9535
AT4G29680			Alkaline-phosphatase-like fami...		Lus10034660 [exp]	20.9	0.9478
AT2G43590			Chitinase family protein (.1)		Lus10003587 [exp]	24.5	0.9464

Compare expression of checked genes

Lus10029850 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.