Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000191 [exp] 256 / 1e-87 ND / Lus10039879 [exp] 255 / 2e-87 ND / Lus10039878 [exp] 205 / 1e-67 ND / Lus10019815 [exp] 198 / 3e-65 ND / Lus10014101 [exp] 198 / 4e-65 ND / Lus10014099 [exp] 197 / 7e-65 ND / Lus10019813 [exp] 196 / 3e-64 ND / Lus10037860 [exp] 196 / 4e-64 ND / Lus10028949 [exp] 189 / 1e-61 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G100100 [exp] 202 / 9e-67 ND / Potri.014G082000 [exp] 197 / 1e-64 ND / Potri.014G081800 [exp] 195 / 1e-63 ND / Potri.002G158600 [exp] 191 / 3e-62 ND / Potri.014G081900 [exp] 191 / 4e-62 ND / Potri.002G158700 [exp] 188 / 4e-61 ND / Potri.014G082700 [exp] 186 / 2e-60 ND / Potri.003G126200 [exp] 178 / 4e-57 ND / Potri.017G153100 [exp] 155 / 9e-48 ND / Potri.009G009700 [exp] 150 / 4e-46 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029851 pacid=23159707 polypeptide=Lus10029851 locus=Lus10029851.g ID=Lus10029851.BGIv1.0 annot-version=v1.0 ATGAAGAACACTCCATCCCTCACCATATTCCTCGCCCTACTATTCATCACCATCTCCGCCGCCACCTCCACCTTCATCCAATCACCATGCAAGCCGAGCG GCAAGCTCCGGGGCAAAAAGCCGCCGCCGAAGAAATGCAACAAGAAAAACAACTCCGAGTGTTGCGTGGAAGGCAAGCTATACGCGACCTATAAATGCTC GCCACCTGTCACCCAGCACACCAAGGCGACTTTGACCCTCAACAGCTTCGAGAAGGGGGACGACGGGGGCGGGCCCTCGGAGTGTGACGACAAGTTCCAC TCCGACAAACAGCCCATCGTGGCCCTCTCGACGGGGTGGTTCGAGGACAAACAGCGTTGCTTCCGGTTCATCAACATAACGTCACCGAAGAACGGGAAGA GTGTGCTGGCGAAAGTGGTGGACGAGTGTGACTCTGCTAAAGGGTGCGATGAGGATCATGATTACCAGCCGCCGTGTCCGAACGACGTCGTTGATGGGTC GTACGCGGTGTGGGATGCGCTCGGTGTGCCGGCAGGGAATCGGGGTGAGCTCAAGGTTACTTGGTCCGCCGTGTGA
AA sequence Show only first row Show all	>Lus10029851 pacid=23159707 polypeptide=Lus10029851 locus=Lus10029851.g ID=Lus10029851.BGIv1.0 annot-version=v1.0 MKNTPSLTIFLALLFITISAATSTFIQSPCKPSGKLRGKKPPPKKCNKKNNSECCVEGKLYATYKCSPPVTQHTKATLTLNSFEKGDDGGGPSECDDKFH SDKQPIVALSTGWFEDKQRCFRFINITSPKNGKSVLAKVVDECDSAKGCDEDHDYQPPCPNDVVDGSYAVWDALGVPAGNRGELKVTWSAV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10029851 [exp]	0	1
AT5G27690			Heavy metal transport/detoxifi...		Lus10033469 [exp]	8.8	0.8587
AT4G18550		AtDSEL	Arabidopsis thaliana DAD1-like...		Lus10017668 [exp]	9.3	0.8450
AT1G23550		SRO2	similar to RCD one 2 (.1)		Lus10029152 [exp]	9.4	0.8290
AT1G11300			protein serine/threonine kinas...		Lus10013245 [exp]	10.7	0.8443
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Lus10018380 [exp]	11.6	0.8020
AT3G49210			O-acyltransferase (WSD1-like) ...		Lus10017721 [exp]	14.7	0.7506
AT5G39020			Malectin/receptor-like protein...		Lus10025545 [exp]	16.3	0.8556
AT4G17720			RNA-binding (RRM/RBD/RNP motif...		Lus10011063 [exp]	21.2	0.8449
AT5G06800	GARP		myb-like HTH transcriptional r...		Lus10023816 [exp]	24.0	0.8353
AT1G55790			Domain of unknown function (DU...		Lus10039534 [exp]	25.6	0.8379

Compare expression of checked genes

Lus10029851 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.