Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25800 253 / 6e-72 Calmodulin-binding protein (.1.2) AT5G26920 249 / 4e-71 CBP60G Cam-binding protein 60-like G (.1.2) AT2G18750 251 / 6e-71 Calmodulin-binding protein (.1.2.3) AT5G57580 251 / 1e-70 Calmodulin-binding protein (.1) AT4G31000 231 / 9e-65 Calmodulin-binding protein (.1.2) AT2G24300 229 / 1e-63 Calmodulin-binding protein (.1.2) AT5G62570 223 / 6e-63 Calmodulin binding protein-like (.1.2) AT1G73805 213 / 6e-60 SARD1 SAR Deficient 1, Calmodulin binding protein-like (.1) AT1G46264 166 / 6e-45 HSF SCZ, AT-HSFB4 SCHIZORIZA, heat shock transcription factor B4 (.1) AT4G11660 146 / 1e-37 HSF AT-HSFB2B, HSFB2B HEAT SHOCK TRANSCRIPTION FACTOR B2B, winged-helix DNA-binding transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029861 [exp] 402 / 4e-125 AT4G25800 332 / 2e-106 Calmodulin-binding protein (.1.2) Lus10020686 [exp] 402 / 6e-125 AT4G25800 334 / 1e-106 Calmodulin-binding protein (.1.2) Lus10012030 [exp] 303 / 1e-84 AT4G12020 141 / 6e-35 MAPK/ERK KINASE KINASE 4, MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 11, protein kinase family protein (.1.2.3) Lus10011248 [exp] 259 / 1e-73 AT5G57580 751 / 0.0 Calmodulin-binding protein (.1) Lus10018437 [exp] 258 / 4e-73 AT5G57580 746 / 0.0 Calmodulin-binding protein (.1) Lus10007455 [exp] 254 / 1e-71 AT3G44480 98 / 1e-20 recognition of peronospora parasitica 1, Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10016282 [exp] 261 / 5e-71 AT4G12020 142 / 3e-35 MAPK/ERK KINASE KINASE 4, MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 11, protein kinase family protein (.1.2.3) Lus10001436 [exp] 239 / 1e-66 AT5G57580 809 / 0.0 Calmodulin-binding protein (.1) Lus10001630 [exp] 239 / 1e-66 AT5G57580 811 / 0.0 Calmodulin-binding protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G020200 [exp] 343 / 5e-104 AT5G57580 337 / 1e-107 Calmodulin-binding protein (.1) Potri.013G010700 [exp] 342 / 2e-103 AT4G25800 331 / 6e-106 Calmodulin-binding protein (.1.2) Potri.018G111200 [exp] 246 / 1e-69 AT2G24300 759 / 0.0 Calmodulin-binding protein (.1.2) Potri.018G095300 [exp] 245 / 6e-69 AT5G57580 820 / 0.0 Calmodulin-binding protein (.1) Potri.004G035100 [exp] 245 / 7e-69 AT5G57580 792 / 0.0 Calmodulin-binding protein (.1) Potri.011G043300 [exp] 245 / 8e-69 AT5G57580 770 / 0.0 Calmodulin-binding protein (.1) Potri.006G187900 [exp] 244 / 1e-68 AT2G24300 770 / 0.0 Calmodulin-binding protein (.1.2) Potri.011G043200 [exp] 243 / 2e-68 AT5G57580 752 / 0.0 Calmodulin-binding protein (.1) Potri.015G071800 [exp] 231 / 6e-65 AT5G62570 499 / 4e-173 Calmodulin binding protein-like (.1.2) Potri.012G054900 [exp] 225 / 4e-64 AT1G73805 407 / 1e-139 SAR Deficient 1, Calmodulin binding protein-like (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00612 [flax] [poplar] IQ IQ calmodulin-binding motif CL0220 [flax] [poplar] PF07887 [flax] [poplar] Calmodulin_bind Calmodulin binding protein-like CL0123 [flax] [poplar] HTH PF00447 [flax] [poplar] HSF_DNA-bind HSF-type DNA-binding CL0123 [flax] [poplar] PF03110 [flax] [poplar] SBP SBP domain
Representative CDS sequence Show only first row Show all	>Lus10029852 pacid=23159878 polypeptide=Lus10029852 locus=Lus10029852.g ID=Lus10029852.BGIv1.0 annot-version=v1.0 ATGTTTCCACGAGGGAAAGCTGCAGAAGAAGAGAAAGGACATGGCCGTGTCGATACAGAGGAATTCATCGATGATTTCGCTTCAAAAATAGAACCGACGA TTCGATCAGTGATCCGTGATGAGGTTAACACAATCATCCGACAGGCTTCTGGACCAACTCTTGAGCCATTGGCTCTAGGGGTTCCTGCGGAGGGATTGAT TCTGCAGTTTATGGACAAGATTCCATCAACCATCTTCACAGGAAGCAAGATTGTAACTGAAGATGGCAGCCCAGTAAGGATCCAGCTCCTCAATGCTTCA TCCAACACAGTTGTCAAATCAGGACCTTTCTCTTCCCTAAAAGTTGAAATCACTGTTCTTGATGGCGACTTTGTTTCTGAAGACTGGTCAGACAGAGATT TCAGTCGCAATGTGATTAGACAAAGAGATGGAAAGAGGCCTTTGGTGACTGGGGAGCTTATCATTGTGCTGTCAGATGGAGTTGGACAGCTCGGAGATTT GGCTTTCACTGATAATTCCAGCTGGGTTAGATGCCGGCGGTTTAGGCTGGGTGCTAAACCAGTACTGAAAAGAACTTCTGGAGAAGTTATTAGGATTAGA GAAGGTAGAAGTGATCCTTTTGCTGTCAAGGACCACCGTGGTGAAGGGTACCAAAAGCACTACCCTCCAAGGTTGGGAGATGAAGTTTGGAGGTTAGAGA AGGTAGCAAAAGGTGGAAAACTGCATAATCGCCTTTCTTCTTTCGGAATCAATACTGTGAAAGAGCTTCTTCAGGCCAATGCCGTCGACCAACCTGCACT AAGAAATAAAGTTGTTGGAGGTGTAATCTCGAACAGAGTATGGGACATGATCATGGTGCATGCCAATGCATGTGAGGTAGAAGAAAACAAGTTCTATGCC TATGGTAAACATGGAGAAGGCATCAGACTGCTGTTCGATCCTCTATACAAGCTTGTAGGCGCCAGTTTTGATGATGAGAAAAGCTACATTCCTTTGGATA AACTAACAAATGCTCAGAAGATCTTGGTGGAGCTGTTTAGAGGGCAGGAAGCTATCCATGACCGGATGGAAATGGTCCCCGTTGATTCTTCTTCAGTTGC TTTCACCTCATTCTTGCCTTTGGAGGAAGTTGATCATCAGAGGAAATACGTGCCGTCATTTGTGTCAAAGACATATCAGCTGGTGGACGATCCGTCCACT GACCACATTGTGTCTTGGGTGGGAGACGGATCAACCTTCCTAGTACGGGTCCCGGCTGAGTTCGCACGTGACGTTCTTCCTAAATACTTCAAGCACAATA ACTTCTCCTCCTTTGTCCGCCAACTCAACACCTTTGGTTTTAGAAAGTTTGCACCGGAGAGATGGGAATTCGTGAACGAGTTCTTCAAGAAAGGGGAAGA ACATTTGCTCTGCCAAATCAAGCGCAGGAAAACCCAGACATTTCTGAAGAAAGATGAATCCAAACCAAGTCCGGATTTGAAAGATAACAACTCGATAAGC TCACAATCGTCATGCCTTTACAATGACAGCGGAATTACCAACAGGAAGTGGAAGCAGGAAACTTCCGCGGTCACTTATTCTGGTTCCTGTGCATCAGAAG TGACGACATGGGGACAGGAGATTCCTCCTTTTCTCACCCTATGTACAGAAGAAGAAGTGGCTTCCCATGTTCCCAATTGGCTATCGTTGCCCAAACCTGA ATCGAACCTAAAAGCAAAATCTGCTTGGCGCAAGCTTCGGACAGCTTTGAAATTCACTTCTATTCTCACAAGAAGGACACGTCTAATTGAAGCTGCTAAA GTTGATTTCAGATTGCTGAGCTTCCAAAGAATGCTAAAAGAACAGGGAAATGTGAAGTTAAGTAGTATATCAGATGAGCAAGCGTTTTCCTTCATCAAGG TGAAGGGAAACATGAAGCCCAGCTGGCTAGTAGAAGCTGCTGCAGCAAGGATTCAGAACAAGTTCCGGAGTTGGAAAGCCAGGATGGAGTTCTTAGCTAT TCTGCATAAAATTGTTAAAATTCAGGCTCATGTAAGAGGACACCACGTCAGGAAAAACATCAAGGTGATATTGTCATCTGTAGGCATTACGAAGAAGGTG GTACTTCGAAGGAGAAGGAACAGAAGTATGTTGCGCGGGTTTAGACCTGGGTTGGTCGATGAAAGTCACAGAGGCAGCATCCAGCAGCATTTATCAGCAG GAGAGGATGAGCAAGCGCTTCCCTTAATCAAGGTGAAGGGAAACAAGAAGCTCGCCGAGCCAGTAGAAGCAGCTGCAGTAAGGATTCAGCGCATGTTCCG GAGTTGGAAAGCCAGGAAGGAGTTCTTAGTTATTCTGCAAAAAGTTGTTAAAATTCAGGCTCATGTAAGAGGACACCATGCCAGGAAAAACTTCATGGTG ATGTCATCGTCTCTAAGCATCGTGGAGAAGGTGGTACTTCGATGGAAAAGGAACAGAAGCACGTTGCATGGGTTTAGACCCGAGTTGGTCGATGAAAATC ACCACAGCAGCATCCAGCCTGATTTATCGGCCAGAGAGGACGATTATGGTTTCTTTAAAGAAGAAAGGAAGCAAACAGAAGAAAGATCTCAGATTGCTCT TGTGAAGGCGACGTCTGTGATTCAGCTTTCGGAGCCTAAAGTGGAGATAACCCAAATGAAAGATCTAAAATTCGACATGGCTAAAGCATTGCAGCTTCAA AGTTTCACTTCGAAACAAAATCTTCATAGCCGCAACTCCATGTTTACACAAGAGATTTACATTTCAAAGTACCCCTCGTTCCAAATTTCTGCCCACAACT TTGTGTCCTTAGTATTCCCATACTGCAACTTTCCTCAGCTATGGAAGGGAGGGGAACAGCTGTTAGTAAACCTGAAGTCTATGGATCTGAACCACTCGAA TCTGTTTGAGATCCCAAACTTATCAAAGGCTCAGAAATTGGAAAGTGTGAATCTTGAAGGCTGTGGAAACTTGGTTGGGGTGCCATCCATTCAGTATCTT ACAAATCTTAAGAATCTAAACCTAAAGGGCTGTCATGGTCTGAAGGGGCTACCAAGTTTGATCAGATTGAAGTTCCTCAACAGTCTGGATCTCTCCGACT GCTCAAGCCTCACCAGGCTTCCTCCATCGCTTGGGTGTCTGCCGAATCTTTGCGAATTGAACCTCAGGAACTGCACAAAACTGGATTACCTCCCGCGTAC TGTTCTTCACTTAATGAGATCCCTTGAAACTCTGAATGTTTCTGGCTGCTACAGCTTGTGGAAACCTATCAATGGAGACCTCGTCAGCAATTCTACTGAA GGAACTTGCCTTGAATCGCAATCGGTCAAGCCTGTGGAATTTGATGCTGCTGGAGATTCACCATCGCAAGATCTGTCACCCGAATTTAATGAAATGCACG GAAAGGAGGCTTTAGAATGGGAGCTGGATGATTATACTTCTACGGCCACTCCATTGATAGATTATCTACCTTCAAAACTCAGGACTAGGCTGTTGCTTCA TCCTGCAATGGATTTTGAAGATAAAAATGATCATGGAGATACAACGAGGACTGTATCTGTTAGTTGCCAGGTGGAAGATTGTGGAGTTGATCTTAGCCAG GCAGAGACTTATCACCAACGTCATAGAATCTGCGAGGTTCATTATCAGGCTAGTAATGCATTAGTCAGAGATGTCCTGCAACGGTTTTGCCTGCAATGTT GCAGGTTTCATATCCTTGAAGATTTCGATGATGGGGAACGAAACTGCAGAAGCCGGTTAGCAGGCTATCATCAAAAGCAGAGGAGGCAGAGTATTGCTAC AGAGGATGAAAAACCTTCAACTCTCGAAACGGATGAAAACGGGTCACTGTATAAGAGAACAAAGTGGGAAGACTGGGATGAAGAAGCTAATGATGCATTT GGGAGCATTGAGAACGATGTTCTGGAAATGGTCGAGCAACTTTCGAGCTGGAATTGCGATGGAAAGGAAGTGCCGGAGGATGTGGTGGCTTGGTTGGCAG AGCTGGAACAGAGTGTTCCAGAGACAGTGATGAGTATGAAGAGTGCCAAAGCTGAAGCAGGTGTTGTTGGGGAGAAGTTGAAGGAGATGGATGCAAGGTT GGTAGTTGGAAGGGTAGAGCTGAGTTTGCTGGATAAGGAAATGTCAAGGATTTTGAAGGAGGAAGAGGAGATTGAGGCTCAGCTTCAGCTTTTGATGGAT GAGAAGAATAGAAGAGATTTGTTGATGCAGCAGAAGGGGACTGAACCATAG
AA sequence Show only first row Show all	>Lus10029852 pacid=23159878 polypeptide=Lus10029852 locus=Lus10029852.g ID=Lus10029852.BGIv1.0 annot-version=v1.0 MFPRGKAAEEEKGHGRVDTEEFIDDFASKIEPTIRSVIRDEVNTIIRQASGPTLEPLALGVPAEGLILQFMDKIPSTIFTGSKIVTEDGSPVRIQLLNAS SNTVVKSGPFSSLKVEITVLDGDFVSEDWSDRDFSRNVIRQRDGKRPLVTGELIIVLSDGVGQLGDLAFTDNSSWVRCRRFRLGAKPVLKRTSGEVIRIR EGRSDPFAVKDHRGEGYQKHYPPRLGDEVWRLEKVAKGGKLHNRLSSFGINTVKELLQANAVDQPALRNKVVGGVISNRVWDMIMVHANACEVEENKFYA YGKHGEGIRLLFDPLYKLVGASFDDEKSYIPLDKLTNAQKILVELFRGQEAIHDRMEMVPVDSSSVAFTSFLPLEEVDHQRKYVPSFVSKTYQLVDDPST DHIVSWVGDGSTFLVRVPAEFARDVLPKYFKHNNFSSFVRQLNTFGFRKFAPERWEFVNEFFKKGEEHLLCQIKRRKTQTFLKKDESKPSPDLKDNNSIS SQSSCLYNDSGITNRKWKQETSAVTYSGSCASEVTTWGQEIPPFLTLCTEEEVASHVPNWLSLPKPESNLKAKSAWRKLRTALKFTSILTRRTRLIEAAK VDFRLLSFQRMLKEQGNVKLSSISDEQAFSFIKVKGNMKPSWLVEAAAARIQNKFRSWKARMEFLAILHKIVKIQAHVRGHHVRKNIKVILSSVGITKKV VLRRRRNRSMLRGFRPGLVDESHRGSIQQHLSAGEDEQALPLIKVKGNKKLAEPVEAAAVRIQRMFRSWKARKEFLVILQKVVKIQAHVRGHHARKNFMV MSSSLSIVEKVVLRWKRNRSTLHGFRPELVDENHHSSIQPDLSAREDDYGFFKEERKQTEERSQIALVKATSVIQLSEPKVEITQMKDLKFDMAKALQLQ SFTSKQNLHSRNSMFTQEIYISKYPSFQISAHNFVSLVFPYCNFPQLWKGGEQLLVNLKSMDLNHSNLFEIPNLSKAQKLESVNLEGCGNLVGVPSIQYL TNLKNLNLKGCHGLKGLPSLIRLKFLNSLDLSDCSSLTRLPPSLGCLPNLCELNLRNCTKLDYLPRTVLHLMRSLETLNVSGCYSLWKPINGDLVSNSTE GTCLESQSVKPVEFDAAGDSPSQDLSPEFNEMHGKEALEWELDDYTSTATPLIDYLPSKLRTRLLLHPAMDFEDKNDHGDTTRTVSVSCQVEDCGVDLSQ AETYHQRHRICEVHYQASNALVRDVLQRFCLQCCRFHILEDFDDGERNCRSRLAGYHQKQRRQSIATEDEKPSTLETDENGSLYKRTKWEDWDEEANDAF GSIENDVLEMVEQLSSWNCDGKEVPEDVVAWLAELEQSVPETVMSMKSAKAEAGVVGEKLKEMDARLVVGRVELSLLDKEMSRILKEEEEIEAQLQLLMD EKNRRDLLMQQKGTEP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G18750			Calmodulin-binding protein (.1...		Lus10029852 [exp]	0	1
AT2G41790			Insulinase (Peptidase family M...		Lus10018071 [exp]	1.7	0.8549
AT5G17460			unknown protein		Lus10009117 [exp]	8.5	0.8091
AT1G76390		PUB43	plant U-box 43, ARM repeat sup...		Lus10018246 [exp]	9.9	0.7761
AT1G78280			transferases, transferring gly...		Lus10036482 [exp]	10.1	0.7862
AT5G55530			Calcium-dependent lipid-bindin...		Lus10043169 [exp]	12.3	0.7855
AT4G33620			Cysteine proteinases superfami...		Lus10020445 [exp]	12.6	0.8019
AT5G17570			TatD related DNase (.1)		Lus10017234 [exp]	15.5	0.7787
AT5G66850		MAPKKK5	mitogen-activated protein kina...		Lus10021766 [exp]	17.3	0.7747
AT5G66850		MAPKKK5	mitogen-activated protein kina...		Lus10032761 [exp]	18.7	0.7512
AT3G14460			LRR and NB-ARC domains-contain...		Lus10026132 [exp]	21.5	0.7773

Compare expression of checked genes

Lus10029852 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.