Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09190 575 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G20540 363 / 1e-120 MEF21 mitochondrial editing factor 21 (.1) AT5G66520 356 / 1e-116 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G56310 352 / 4e-116 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G08510 343 / 7e-113 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G59200 343 / 2e-112 OTP80 ORGANELLE TRANSCRIPT PROCESSING 80, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G48910 345 / 6e-112 LPA66 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G37380 337 / 4e-109 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G15930 334 / 2e-107 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G44230 330 / 4e-106 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005987 [exp] 353 / 4e-117 AT5G08510 602 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10029344 [exp] 351 / 1e-114 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030053 [exp] 337 / 4e-108 AT1G08070 884 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10020918 [exp] 332 / 1e-107 AT2G29760 474 / 3e-159 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003422 [exp] 330 / 8e-107 AT2G44880 679 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10030125 [exp] 326 / 1e-106 AT2G20540 618 / 0.0 mitochondrial editing factor 21 (.1) Lus10025490 [exp] 330 / 2e-106 AT2G33760 734 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014298 [exp] 327 / 3e-105 AT5G66520 748 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024971 [exp] 327 / 4e-105 AT4G37380 772 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G019400 [exp] 702 / 0 AT1G09190 574 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G223900 [exp] 376 / 2e-125 AT5G56310 508 / 1e-176 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G239600 [exp] 375 / 5e-124 AT5G59200 694 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 80, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G175900 [exp] 369 / 5e-123 AT5G08510 608 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G065500 [exp] 366 / 1e-120 AT5G06540 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G035900 [exp] 364 / 1e-120 AT2G20540 709 / 0.0 mitochondrial editing factor 21 (.1) Potri.005G119000 [exp] 356 / 4e-116 AT5G44230 792 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G012600 [exp] 356 / 5e-116 AT2G29760 540 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G031600 [exp] 356 / 3e-115 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G258766 [exp] 348 / 2e-114 AT1G06150 705 / 0.0 EMBRYO DEFECTIVE 1444, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10029853 pacid=23159676 polypeptide=Lus10029853 locus=Lus10029853.g ID=Lus10029853.BGIv1.0 annot-version=v1.0 ATGAACCAATATATCAGGGAGATTGAGAGGAAGGTTTTGCGGCTTCTCCACAGTAACAAGACGTGGAATCACCTCCGCCAAATCCACGCTCATATCCTCC GCCGTGGGCTTAACCAGTGCAACCAAGTTATGTCCCATTTCGTGTCCGTTTGCGGGTCTCTGAACAAGATGGAGTACTCCGATCGTGTCTTTGACCAAAC TCATAATCCGAACATATTTCTTTTCAATGCCATGATCAAGGGGTATTCTGTTTGCGGACCGTTTGAGGAGTCCCTGTGTTTGTTCTGGTGGATGAAAAAA GGGTGTGGGATTTGGGCTGATGAGTACACCTACGCGCCTTTGCTCAAGGCGTGTTCTACTCTTGGGGACGTTAGATTCGGGCAGTGTGTTCAGAAGGAGG TTGTAGCACGTGGGTTCGACGGGTTTAGCTCGATAAGGATTGGGGTTGTGGAGCTGTACACAACCTGTGGAGCTATGGAAGATGCACGGAAGGTGTTTGA CGAAATGCCTAATAGAGAAGTGATTGTTTGGAATTTGATGATTCGTGGGTATTGTAAGAGGGGGGATGTGGAAAGTGGGTTGTGTTTGTTTAGGAACATG AGTGAGAGGAGTGTCGTCTCGTGGAATATAATGATTTCTGGTTTGGCTCAGAGTGGTCGCGATGGAGAAGCTTTAGGCCTTTTTCGTGAAATGCAGGATG GAGATGTGAAGGCAGATGAAGCAACTTTGGTCACAGTTCTGCCGATTTCCGCCCGTTTGGGGGATCTTGGTGTAGGCCAATGGATTCATTCCTATGCTGA ATCTAGCAGGGTGTATCAGAATTCTGTGCCTGTGGGCAATGCTCTTGTAGATTTTTACAACAAAAGTGGGAATTTGGATACTGCGATGCGAATATTCAAC GAGATGCCTAAGAAGAATGTGGTTTCTTGGAACGCAATGATCTCTGGTCTAGCTTTCAGTGGGAAAGGAGAACTGGGGTCTGAGTTGTTCGAGGAGATGA AAGACCAAGGAGTCTGTCCCAATGATGCCACTCTTATAGCGGTTTTATCGTGCTGTGCTCATGCAGGTTTGGTTGAGAGAGGCAGAGTTTTTTTCGCCTC GATGATGGAAGATCACAAAATTGAACCGAAGCTCGAGCATTACGGATGCATGGTTGATCTGCTTGGGCGTGATGGGCGTGTGAGAGAAGCTTATGATTTG GTCAGTAGCATGCCACATCCGCCAACTGCTGCTTTCTGGGGTGCCTTGCTCAGTGCCTGTCGTAACCATGGCGATTTAGAGCTTGCAGAGCTTGTAGTCA AAAAGCTCATCGCCCTCGAACCTTGGAATTCTGGTAATTACGTGCTTTTGTCCAACATATATGCCGAAGAAGAAAGATGGGATGAAGTTGAGAAGGTAAG AGGCTTGATGAGGGAAAGAAGTATTAAGAAAGCATATGGCCTAAGCGCTATTGGATGA
AA sequence Show only first row Show all	>Lus10029853 pacid=23159676 polypeptide=Lus10029853 locus=Lus10029853.g ID=Lus10029853.BGIv1.0 annot-version=v1.0 MNQYIREIERKVLRLLHSNKTWNHLRQIHAHILRRGLNQCNQVMSHFVSVCGSLNKMEYSDRVFDQTHNPNIFLFNAMIKGYSVCGPFEESLCLFWWMKK GCGIWADEYTYAPLLKACSTLGDVRFGQCVQKEVVARGFDGFSSIRIGVVELYTTCGAMEDARKVFDEMPNREVIVWNLMIRGYCKRGDVESGLCLFRNM SERSVVSWNIMISGLAQSGRDGEALGLFREMQDGDVKADEATLVTVLPISARLGDLGVGQWIHSYAESSRVYQNSVPVGNALVDFYNKSGNLDTAMRIFN EMPKKNVVSWNAMISGLAFSGKGELGSELFEEMKDQGVCPNDATLIAVLSCCAHAGLVERGRVFFASMMEDHKIEPKLEHYGCMVDLLGRDGRVREAYDL VSSMPHPPTAAFWGALLSACRNHGDLELAELVVKKLIALEPWNSGNYVLLSNIYAEEERWDEVEKVRGLMRERSIKKAYGLSAIG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09190			Tetratricopeptide repeat (TPR)...		Lus10029853 [exp]	0	1
AT3G24000			Tetratricopeptide repeat (TPR)...		Lus10038741 [exp]	1.7	0.8488
AT3G25970			Pentatricopeptide repeat (PPR)...		Lus10030249 [exp]	3.7	0.8379
AT4G10620			P-loop containing nucleoside t...		Lus10035986 [exp]	3.7	0.8198
					Lus10029579 [exp]	4.9	0.8321
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Lus10016509 [exp]	5.0	0.8294
AT3G49740			Tetratricopeptide repeat (TPR)...		Lus10019278 [exp]	6.3	0.8133
AT3G22630		PRCGB, PBD1	20S proteasome beta subunit D1...		Lus10006596 [exp]	6.5	0.8359
AT4G20090		EMB1025	embryo defective 1025, Pentatr...		Lus10036238 [exp]	9.2	0.7895
AT5G04780			Pentatricopeptide repeat (PPR)...		Lus10034715 [exp]	9.5	0.8142
AT1G03540			Pentatricopeptide repeat (PPR-...		Lus10033713 [exp]	10.6	0.8173

Compare expression of checked genes

Lus10029853 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.