Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47470 375 / 1e-129 ATPDI11, ATPDIL2-1, UNE5, MEE30 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) AT1G04980 64 / 4e-11 ATPDI10, ATPDIL2-2 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1) AT1G21750 59 / 2e-09 ATPDI5, ATPDIL1-1 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) AT5G60640 59 / 3e-09 ATPDI2, ATPDIL1-4 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) AT2G32920 58 / 3e-09 ATPDI9, ATPDIL2-3 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 9, PDI-like 2-3 (.1) AT1G77510 56 / 2e-08 ATPDI6, ATPDIL1-2 PROTEIN DISULFIDE ISOMERASE 6, PDI-like 1-2 (.1) AT3G54960 50 / 1e-06 ATPDI1, ATPDIL1-3 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 1, PDI-like 1-3 (.1.2) AT4G27080 47 / 1e-05 ATPDI7, ATPDIL5-4 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 7, PDI-like 5-4 (.1.2) AT3G20560 46 / 3e-05 ATPDI12, ATPDIL5-3 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 12, PDI-like 5-3 (.1) AT3G16110 46 / 3e-05 ATPDI4, ATPDIL1-6 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 4, PDI-like 1-6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020691 [exp] 532 / 0 AT2G47470 473 / 3e-168 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Lus10010274 [exp] 384 / 2e-133 AT2G47470 549 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Lus10036337 [exp] 380 / 6e-132 AT2G47470 548 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Lus10031522 [exp] 65 / 3e-11 AT1G04980 651 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1) Lus10035360 [exp] 64 / 6e-11 AT1G04980 543 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1) Lus10015160 [exp] 62 / 2e-10 AT1G04980 621 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1) Lus10037403 [exp] 62 / 4e-10 AT5G60640 729 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) Lus10042721 [exp] 62 / 4e-10 AT1G21750 684 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Lus10029681 [exp] 58 / 5e-09 AT1G21750 684 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G122800 [exp] 401 / 5e-140 AT2G47470 551 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Potri.002G198300 [exp] 400 / 2e-139 AT2G47470 530 / 0.0 UNFERTILIZED EMBRYO SAC 5, MATERNAL EFFECT EMBRYO ARREST 30, PDI-LIKE 2-1, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 11, thioredoxin family protein (.1.2.3.4) Potri.014G160000 [exp] 69 / 8e-13 AT1G04980 617 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 10, PDI-like 2-2 (.1) Potri.002G082100 [exp] 61 / 6e-10 AT1G21750 689 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Potri.009G013600 [exp] 60 / 9e-10 AT5G60640 712 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3) Potri.005G179000 [exp] 55 / 4e-08 AT1G21750 680 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Potri.008G040100 [exp] 48 / 6e-06 AT3G54960 288 / 7e-92 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 1, PDI-like 1-3 (.1.2) Potri.009G004500 [exp] 44 / 4e-05 AT1G07960 182 / 3e-60 PDI-like 5-1 (.1.2.3) Potri.011G135500 [exp] 44 / 8e-05 AT4G27080 760 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 7, PDI-like 5-4 (.1.2) Potri.001G419300 [exp] 44 / 9e-05 AT3G20560 761 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 12, PDI-like 5-3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07749 [flax] [poplar] ERp29 Endoplasmic reticulum protein ERp29, C-terminal domain CL0172 [flax] [poplar] Thioredoxin PF00085 [flax] [poplar] Thioredoxin Thioredoxin
Representative CDS sequence Show only first row Show all	>Lus10029854 pacid=23159729 polypeptide=Lus10029854 locus=Lus10029854.g ID=Lus10029854.BGIv1.0 annot-version=v1.0 ATGTCTAGTAATGTCTCTAGCACTTATAGATCACTTAAAGCATTTCCTTATACCTATTGTTTGTGTTGCATTAGGTGTGGGTTCTGTAAAAAGCTCATCC CAGAGTATGAGAAGCTTGGTGCTAGGTTCAAAAGATCGAAATCGGTTCTGATTGGAAAGGTGGACTGTGATGAACATAAGAGCCTCTGCACCAAATTTGG AGTGTCTGGTTACCCAGCTCTTAAATGGTTCCCTAAAGGCTCTTTAGACCCTAGAAAACTGGTCGAATATATAGGAACAAACGTGAAGATAGCTGCAGTC CAATCCAACGTTGTGGTGCTAACACAAGAGACATTCGATCAAATTGTTCTCGACGATACAAAAGATGTCATGGTTGAGTTCTACGCACCATCGTTGGTGT CCAGTGCTCCGAGTTCTTGTTATTATACACATTGCTTTGAAACTGATGGAACTACTTTGTTTGCAGGTGTGGCCACTACATACGAAGAGGTTGCCACAGC GTTTAAGCTGGAGGAAGATGTTGTGATTGCTAACATTGATGCCGAAAAGTACACAGACTTGGCCGAAAAGTATGGAGTAACTGGTTTCCCCACTTTGAAA TTCTTCCCCAAGAGCAACAAAGCCGGTGAAGCTTATGGTGGCAGAAGAGATGTAGACGACTTCGTAAGCTTCATCAACGACAAGTGTGGCACCAGCCGCG ACATCGATGGAAAGCTTACTCCGAAGGCCGGGATAGCCACATCTCTAGAAGACTTGGTTAAGGAGTTCGTAGCTTATAGTGACGATGAGAAGAAGAAGGC GGTTATTCAGCGAATGGAAGAAGAAGTTAGGAAGCTCAAGGGCAACAATGCAAAGTATGGCGAGATGTACGTAAAAGCAGCGAGAGGCTGTCTGCAGAAA GGTTCTGATTACCCGAAGAACGAAATCCAGCGGCTGGATCGCATGCTTCAGAAGTCAATAAGTGAAGTAAAGGCAGACCAGTTCAGTATCAAGAAGAACA TCCTGTCAACCTTTGAGAGCTGA
AA sequence Show only first row Show all	>Lus10029854 pacid=23159729 polypeptide=Lus10029854 locus=Lus10029854.g ID=Lus10029854.BGIv1.0 annot-version=v1.0 MSSNVSSTYRSLKAFPYTYCLCCIRCGFCKKLIPEYEKLGARFKRSKSVLIGKVDCDEHKSLCTKFGVSGYPALKWFPKGSLDPRKLVEYIGTNVKIAAV QSNVVVLTQETFDQIVLDDTKDVMVEFYAPSLVSSAPSSCYYTHCFETDGTTLFAGVATTYEEVATAFKLEEDVVIANIDAEKYTDLAEKYGVTGFPTLK FFPKSNKAGEAYGGRRDVDDFVSFINDKCGTSRDIDGKLTPKAGIATSLEDLVKEFVAYSDDEKKKAVIQRMEEEVRKLKGNNAKYGEMYVKAARGCLQK GSDYPKNEIQRLDRMLQKSISEVKADQFSIKKNILSTFES

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G47470		ATPDI11, ATPDIL...	UNFERTILIZED EMBRYO SAC 5, MAT...		Lus10029854 [exp]	0	1
AT1G05170			Galactosyltransferase family p...		Lus10040062 [exp]	13.0	0.6060
AT1G63610			unknown protein		Lus10030753 [exp]	24.2	0.5826
AT5G17820			Peroxidase superfamily protein...		Lus10005681 [exp]	24.5	0.5932
AT2G34900		GTE1, GTE01, IM...	IMBIBITION-INDUCIBLE 1, GLOBAL...		Lus10018900 [exp]	46.3	0.5177
					Lus10015849 [exp]	208.2	0.4469

Compare expression of checked genes

Lus10029854 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.