Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62630 130 / 5e-34 Protein of unknown function (DUF1645) (.1) AT2G15760 62 / 2e-10 Protein of unknown function (DUF1645) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020690 [exp] 424 / 4e-148 AT3G62630 232 / 1e-72 Protein of unknown function (DUF1645) (.1) Lus10019892 [exp] 78 / 1e-15 AT2G15760 202 / 2e-62 Protein of unknown function (DUF1645) (.1) Lus10014025 [exp] 77 / 2e-15 AT2G15760 203 / 8e-63 Protein of unknown function (DUF1645) (.1) Lus10012069 [exp] 74 / 1e-14 AT2G15760 171 / 4e-51 Protein of unknown function (DUF1645) (.1) Lus10027912 [exp] 70 / 6e-13 AT2G15760 166 / 1e-48 Protein of unknown function (DUF1645) (.1) Lus10032766 [exp] 54 / 7e-08 AT2G26530 193 / 4e-59 Protein of unknown function (DUF1645) (.1), Protein of unknown function (DUF1645) (.2) Lus10040164 [exp] 50 / 1e-07 ND / Lus10021757 [exp] 53 / 2e-07 AT2G26530 194 / 2e-59 Protein of unknown function (DUF1645) (.1), Protein of unknown function (DUF1645) (.2) Lus10006479 [exp] 52 / 2e-07 AT2G26530 133 / 4e-37 Protein of unknown function (DUF1645) (.1), Protein of unknown function (DUF1645) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G010400 [exp] 265 / 2e-85 AT3G62630 199 / 7e-60 Protein of unknown function (DUF1645) (.1) Potri.005G019600 [exp] 243 / 1e-76 AT3G62630 218 / 5e-67 Protein of unknown function (DUF1645) (.1) Potri.004G143500 [exp] 68 / 2e-12 AT2G15760 137 / 1e-37 Protein of unknown function (DUF1645) (.1) Potri.009G105400 [exp] 66 / 1e-11 AT2G15760 100 / 6e-24 Protein of unknown function (DUF1645) (.1) Potri.014G034900 [exp] 60 / 7e-10 AT2G26530 174 / 1e-51 Protein of unknown function (DUF1645) (.1), Protein of unknown function (DUF1645) (.2) Potri.002G128500 [exp] 56 / 2e-08 AT2G26530 191 / 4e-58 Protein of unknown function (DUF1645) (.1), Protein of unknown function (DUF1645) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07816 [flax] [poplar] DUF1645 Protein of unknown function (DUF1645)
Representative CDS sequence Show only first row Show all	>Lus10029855 pacid=23159700 polypeptide=Lus10029855 locus=Lus10029855.g ID=Lus10029855.BGIv1.0 annot-version=v1.0 ATGGAGCTCCAGCTCCAATCCACCAAAGATGGAGGGCAAACCGAGCCCCCCTGCATTGCTCACGATTCCTCCGACCACTTCTTCGCCGACGACTTCGACA GCACTTGCTCAACTCCTTTCGTCAGCGCTCCTTCCAGCCCCGGCCGGACCAACAACCCCGCTTCCTCCGGAGGATTCTTCTACAGCTGTCCCGCCAGCCC AATGCACTTCGCCATAACCTCATCCGCCGCTCACCGGTCGTCTTACTTCGACGACGACGAGGGAGAATTAGATTTCGAAGGTGGAAGTAGGAGTTTGAAC GAGTTCGAATTCTCCGCCAGGTTCGGATCTTCCGGGTCGGGTCAGACCGGATCCATGAGCTCCGCCGACGAGCTGTTCTTGAACGGGAAGATCCGGCCCA TGAAGCTGTCTTCCCATTTGGAGAAGCCTCAGGTTCTCGCTCCGTTGCTGGATCTGGACGAAGAAGAAGAAGGTGAAGAAGCAGGGGAGAGCAGAAATGG TAATAAGTCGGTGGAGAAGGGGTATAATGGGGAGAGCAGAGGCAGAGATCTGAGACTACGGAACAAATCTCTACGGCGGAGAACCAGATCTATGTCCCCT CTTCGATCCTCGCCGTTGGATGATGAGGAGGAAATCGAGAAGAAGGAAGATGAACACAAGGAAGTAGAAGAAGAAGAAGAAGCTGTAGTTGATCAAGATC CCATTTCAATTTCTGCTTCATCATCTTCAACATCCAGATCTTCATCAGCTGGGAGGAATTCAAAGAGATGGGTTTTCCTTAAAGAGTTTCTCTACAGGAG TAAGAGTGAAGGGAGGAGCACTAACAGTAACAGTAACAAGTTCTGGTCAAACATTTCATTTTCTCCAGCTAAGGAGAAGAAAGCTGGGAAGGGAAGCAAT GAAGGTTCTGCTTCAGGGAAAGTAGTTGGAAATGGAAGTGGGAAAAAGCCAGTGAATGGGTTAGGGAGGAAGAGAGTGCCAGCACCATCACCACATGAGC TGCATTACAAAGCAAGTAGAGCTCAAGCTGAGGAGATGAGGAAAAAGACATTCTTGCCTTACAGGCAAGGGTTACTTGGTTGCTTGGGGTTCAGTTCTAA AGGCTATGGAGCCATGAATGGGTTTGCTAGAGCTCTGAATCCAGTCTCTTCCAGGTAA
AA sequence Show only first row Show all	>Lus10029855 pacid=23159700 polypeptide=Lus10029855 locus=Lus10029855.g ID=Lus10029855.BGIv1.0 annot-version=v1.0 MELQLQSTKDGGQTEPPCIAHDSSDHFFADDFDSTCSTPFVSAPSSPGRTNNPASSGGFFYSCPASPMHFAITSSAAHRSSYFDDDEGELDFEGGSRSLN EFEFSARFGSSGSGQTGSMSSADELFLNGKIRPMKLSSHLEKPQVLAPLLDLDEEEEGEEAGESRNGNKSVEKGYNGESRGRDLRLRNKSLRRRTRSMSP LRSSPLDDEEEIEKKEDEHKEVEEEEEAVVDQDPISISASSSSTSRSSSAGRNSKRWVFLKEFLYRSKSEGRSTNSNSNKFWSNISFSPAKEKKAGKGSN EGSASGKVVGNGSGKKPVNGLGRKRVPAPSPHELHYKASRAQAEEMRKKTFLPYRQGLLGCLGFSSKGYGAMNGFARALNPVSSR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G62630			Protein of unknown function (D...		Lus10029855 [exp]	0	1
AT3G62630			Protein of unknown function (D...		Lus10020690 [exp]	1.0	0.9340
AT1G08470		SSL3	strictosidine synthase-like 3 ...		Lus10008451 [exp]	3.7	0.8835
AT4G28570			Long-chain fatty alcohol dehyd...		Lus10024922 [exp]	6.3	0.8419
AT1G24040			Acyl-CoA N-acyltransferases (N...		Lus10030649 [exp]	6.5	0.8648
AT4G00110		GAE3	UDP-D-glucuronate 4-epimerase ...		Lus10015876 [exp]	9.2	0.8343
AT5G59020			Protein of unknown function (D...		Lus10016455 [exp]	14.5	0.8306
AT3G25500		AHF1, AFH1, ATF...	ARABIDOPSIS THALIANA FORMIN HO...		Lus10002149 [exp]	14.7	0.8236
AT3G48610		NPC6	non-specific phospholipase C6 ...		Lus10025726 [exp]	16.4	0.8224
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Lus10016952 [exp]	18.2	0.8163
AT5G37980			Zinc-binding dehydrogenase fam...		Lus10040177 [exp]	22.8	0.8309

Compare expression of checked genes

Lus10029855 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.