Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26910 318 / 1e-95 unknown protein AT3G58650 303 / 3e-90 unknown protein AT3G05750 186 / 5e-49 unknown protein AT1G67040 52 / 1e-06 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020689 [exp] 1423 / 0 AT5G26910 350 / 2e-107 unknown protein Lus10037725 [exp] 164 / 2e-41 AT5G26910 276 / 4e-80 unknown protein Lus10016854 [exp] 125 / 5e-30 AT3G58650 134 / 2e-33 unknown protein Lus10033565 [exp] 54 / 6e-07 AT1G67040 236 / 3e-66 unknown protein Lus10017607 [exp] 49 / 1e-05 AT1G67040 179 / 7e-47 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G019700 [exp] 599 / 0 AT5G26910 417 / 4e-132 unknown protein Potri.013G010500 [exp] 584 / 0 AT5G26910 371 / 6e-115 unknown protein Potri.008G108600 [exp] 338 / 2e-102 AT3G58650 234 / 6e-65 unknown protein Potri.T171201 [exp] 333 / 2e-100 AT3G58650 235 / 3e-65 unknown protein Potri.010G140900 [exp] 227 / 3e-62 AT3G58650 235 / 4e-65 unknown protein Potri.017G116000 [exp] 54 / 4e-07 AT1G67040 317 / 3e-94 unknown protein Potri.004G098300 [exp] 50 / 5e-06 AT1G67040 339 / 2e-102 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029857 pacid=23159807 polypeptide=Lus10029857 locus=Lus10029857.g ID=Lus10029857.BGIv1.0 annot-version=v1.0 ATGGAGGGAGAGCGGAAGCGTTCTAAAGGAAAGTTCTTTAATATGTTTGATTGGAATGGAAAGTCTCGTAAGAAGCTCTTCCCTAACAATTCTGAACTAA ATGAAGGATCCAAAGCATGGAAAGAAAATGTCGAACGAGGGTCGAAATCGAATTCGGAGCTCTATAAGATAGAGGTGGATGAAAGAAGAGGAAATGTTAG TAGTGACTTCAGTTGTGCTTCATCCGTAACGAGCGAAGATGGTTACGGAACTAGGCCTCCGAGTGTAGTAGCGAGGCTTATGGGTTTGGATTCGATGCCA ATGTCGAATGTTGTTGCCGATTCATCTTCGTCTCTAGAGTTGGATACTAGCTTAGGTAGAAATCATCCTCCTAATTTGTGGAGTGAGTACAACAACCCTA TGGACTTGCTCGATGTTTCCAGCATGATGGTGGAAAGGCAGCATCATTGGAGCTCTAGGGAGTCGATGCAGCAAGGACGACCAATTGAGAGATTCAAGAC CGAAACTTTACCCCCGAGATTGGCCAAGTCGATCCCCTCTACCTACCATAAGCTCCTGTCTCCTATCAGGACTCCTGGGTTCACCTCGAGGAGGAATGTT GCTTACATAGCGGAGGCAGCTGCTAAGATAATGGAGTCAAGTCCCAGGGCTGCAACAGCTACAGCTAAAGTACCCTCGATCGGTTCGCCTTCAGTTCCCA TGAGAATAAGAGATTTGAAGCAGAAAATGGAAGCTGCACATAGTATGTCTAGACCTCGTAGTTCGAATTTGATTAGTCAACGTAGAGTCAATAGCAACAG TGGATCGGAAGCCACATCTTCATCCAGGAGGCCTGTTCTATCAGGAAAGGTTTCTCCTGAAAGTGCGAGGGAAAAGGGTAAATCGGTTTCTCGGACAGTA CAATCCAGCAGGACCATTGTTTCCAGACCAGACGGTTCACAAACGAGAAGTAATAGCGTGATAAAACAAAAGGAAAGAATCAAATCCAGCCAGCCAGCCA TGCAAAAGAGCGTGCATAAGAAGCCTGCTGATTTCAGGAACAATGTACTTGAACAGAATCACCAGAAGCAGAATAATTTGTCTAAAAGGCATAGTTCAAG TTCAACCGTGAAGCACTCAGTTCCAAACCAACAACGCGGTTTAAGAGCTGAAACCTTGAGTGGTTCTTCTGGTTCAAGCAGAAAGACTGTGAGTAACACA ACTTTAAAGGCAGGAATACCATCAAGAAAGACCGTGTCCAATTCTGTGAATTCCGAGAAGGAGAAAAGGAAGACTTTAAATCAGAAGAAACCGCTAGTAA ACGTTACTTCTGATAAGCGGTCATATAACAACAAAGACTTGAGATCCATCAAATGCAGTATTGCTTCTGATGATGAATGCTTGAACACATCAACCAGCAA TGGGAAGAATGATGGTATGGATGTCGTCTCGTTTACGTTCACTTCTCCCATGGCTAGGGACATGTCTAAGTCCCCAACATCTGGCCAGGTAATGTCAGTC GCTAATGGCTTCCCTGTTGATACTGAAAATGGTATCCACTTCAGACATGCAATTTCGCTTCCTGGAATCGGAGGTGATGACTTAGGTGTTCTTTTGGAAC AAAAGCTGAGAGAGTTAACAGATAAAGTAGAGTCATCCAGATGTAATGTGATCAGAGAGGATAACTGTGCTGAAGGGAATGTGTCTGACTGTATTTTAGA AAATAAAGAGTCTCATCGGGCGAATGGTGAATGCTTTTCTGGCGACCTTTCACTCCAGAATTCGAACCACGAGCATCAGCAATCAGAAGAAATGGGAGAC CATAGCTGTAGCAGCAGCTACAGTGAAAGAGGAAATGAATTTGGATTCGAACATCCGAGTACAATGTGGATTCCAAGTCAAAGTTGGTCAGATACTCAGG GTAGTAGTGATCAATGGTCACCGAGTCAAGTGTCGAATTCGATCAGTGAGGTGTCTGCAAATGTTACTGTAGATGAGGAATTCGAGGCCGAGCTATCAGA TTCTGCTACCTCCTCTGCAGTGAACAAATCGCAAACTATCGGATCATTCAGCACGACTAAGTATAGGGAGTCGAGTAATTGGGAGCTAGATTATGTTAGG AGCACGCTAGAATCTGCTGAAATGAGGCTGGAAGATCTTGCATTGGGGGGTTGTACAATCTCCAAGATCATATCGCCAACACTCTTTGAAGACGAGGAGA ACAAGTTAGCTAGTAACGATGAAGAACACTCCAAGCTCGATAGGAAGGTTTTGTTCGATTGCATTGTCGAGGTCTTGGACAGCAAATGCAGACGAAACTC GGTGGAGACCTGCAAAGCGTGGTCCGAACTGAGGGTATTGTTCGGGACGAAAGGCTGGTTGGCGAAGGAACTGCAGAAGCAGATCAGAGGGTGGAAAAGC ATGGGAGATTTGATGGTGGATGAGCTTGTGGACATAGACATGAGTTGTAGTAGACATGGGAGATGGCTCGACTTCGATCTCGAAGCGTTTGAGGAAGGTG TAGAGATTGAGGAGGAGATCCTTGCTTCTTTGGTTGATGATCTAGTTTCTGAGTTCTCGGTTCTGTAA
AA sequence Show only first row Show all	>Lus10029857 pacid=23159807 polypeptide=Lus10029857 locus=Lus10029857.g ID=Lus10029857.BGIv1.0 annot-version=v1.0 MEGERKRSKGKFFNMFDWNGKSRKKLFPNNSELNEGSKAWKENVERGSKSNSELYKIEVDERRGNVSSDFSCASSVTSEDGYGTRPPSVVARLMGLDSMP MSNVVADSSSSLELDTSLGRNHPPNLWSEYNNPMDLLDVSSMMVERQHHWSSRESMQQGRPIERFKTETLPPRLAKSIPSTYHKLLSPIRTPGFTSRRNV AYIAEAAAKIMESSPRAATATAKVPSIGSPSVPMRIRDLKQKMEAAHSMSRPRSSNLISQRRVNSNSGSEATSSSRRPVLSGKVSPESAREKGKSVSRTV QSSRTIVSRPDGSQTRSNSVIKQKERIKSSQPAMQKSVHKKPADFRNNVLEQNHQKQNNLSKRHSSSSTVKHSVPNQQRGLRAETLSGSSGSSRKTVSNT TLKAGIPSRKTVSNSVNSEKEKRKTLNQKKPLVNVTSDKRSYNNKDLRSIKCSIASDDECLNTSTSNGKNDGMDVVSFTFTSPMARDMSKSPTSGQVMSV ANGFPVDTENGIHFRHAISLPGIGGDDLGVLLEQKLRELTDKVESSRCNVIREDNCAEGNVSDCILENKESHRANGECFSGDLSLQNSNHEHQQSEEMGD HSCSSSYSERGNEFGFEHPSTMWIPSQSWSDTQGSSDQWSPSQVSNSISEVSANVTVDEEFEAELSDSATSSAVNKSQTIGSFSTTKYRESSNWELDYVR STLESAEMRLEDLALGGCTISKIISPTLFEDEENKLASNDEEHSKLDRKVLFDCIVEVLDSKCRRNSVETCKAWSELRVLFGTKGWLAKELQKQIRGWKS MGDLMVDELVDIDMSCSRHGRWLDFDLEAFEEGVEIEEEILASLVDDLVSEFSVL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G58650			unknown protein		Lus10029857 [exp]	0	1
AT3G59420		ACR4	crinkly4 (.1)		Lus10015956 [exp]	7.5	0.8544
AT4G39620		ATPPR5, EMB2453	EMBRYO DEFECTIVE 2453, A. THAL...		Lus10035850 [exp]	13.8	0.8589
AT5G55280		ATFTSZ1-1, CPFT...	CHLOROPLAST FTSZ, ARABIDOPSIS ...		Lus10016579 [exp]	14.9	0.8548
AT5G20060			alpha/beta-Hydrolases superfam...		Lus10019438 [exp]	16.0	0.8305
AT3G48900			single-stranded DNA endonuclea...		Lus10005744 [exp]	16.9	0.8585
AT2G03880		REME1	required for efficiency of mit...		Lus10005642 [exp]	20.9	0.7755
AT3G59420		ACR4	crinkly4 (.1)		Lus10000764 [exp]	25.4	0.8264
AT1G73970			unknown protein		Lus10000648 [exp]	25.9	0.8462
AT4G16490			ARM repeat superfamily protein...		Lus10014691 [exp]	30.1	0.8482
AT1G31650		ATROPGEF14, ROP...	RHO guanyl-nucleotide exchange...		Lus10037260 [exp]	35.3	0.8244

Compare expression of checked genes

Lus10029857 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.