Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36930 49 / 6e-06 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT3G51560 47 / 2e-05 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G45260 46 / 5e-05 WRKY ATWRKY52, SLH1, RRS1 SENSITIVE TO LOW HUMIDITY 1, RESISTANT TO RALSTONIA SOLANACEARUM 1, ARABIDOPSIS THALIANA WRKY DOMAIN PROTEIN 52, Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2) AT5G45050 46 / 5e-05 WRKY ATWRKY16, TTR1 TOLERANT TO TOBACCO RINGSPOT NEPOVIRUS 1, Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2) AT4G19520 43 / 0.0004 disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G19500 42 / 0.0007 nucleoside-triphosphatases;transmembrane receptors;nucleotide binding;ATP binding (.1.2) AT3G44670 42 / 0.0008 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT5G45210 42 / 0.0008 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004726 [exp] 100 / 8e-23 AT5G36930 167 / 5e-42 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10018658 [exp] 97 / 2e-21 AT1G27180 360 / 4e-106 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10007811 [exp] 95 / 8e-21 AT5G36930 376 / 1e-110 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10002247 [exp] 92 / 5e-20 AT5G36930 363 / 1e-108 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10008519 [exp] 92 / 7e-20 AT1G27180 344 / 2e-98 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10004719 [exp] 91 / 2e-19 AT5G36930 384 / 3e-113 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007812 [exp] 90 / 3e-19 AT5G36930 359 / 4e-106 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007821 [exp] 90 / 4e-19 AT5G36930 339 / 4e-98 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10007836 [exp] 89 / 8e-19 AT5G36930 152 / 1e-38 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G066500 [exp] 50 / 3e-06 AT5G36930 462 / 2e-146 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.005G206400 [exp] 49 / 3e-06 AT5G36930 587 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G002500 [exp] 49 / 4e-06 AT5G17680 587 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G001600 [exp] 48 / 9e-06 AT5G36930 721 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G001602 [exp] 48 / 1e-05 AT5G36930 778 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.002G056100 [exp] 47 / 1e-05 AT5G36930 591 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G068200 [exp] 47 / 2e-05 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.015G043600 [exp] 46 / 4e-05 AT1G27170 1195 / 0.0 transmembrane receptors;ATP binding (.1.2) Potri.008G220200 [exp] 46 / 5e-05 AT5G36930 560 / 3e-180 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.016G128400 [exp] 45 / 5e-05 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029858 pacid=23159659 polypeptide=Lus10029858 locus=Lus10029858.g ID=Lus10029858.BGIv1.0 annot-version=v1.0 ATGAACTCTAATGAGGACCAACATATTGATGATAATGGAGGAAGGAAAATGATAAGGGAAAGAGTTTCTAAGTTCAAAGTTTTTGTTATTCTCGATGACA TTGATGAGAAGATCGCTTTTGCTTCAAGAAGAGATATCAGTTTGGAAGAAAAACTGAAACAGTTACCAGGAACGCTCGAGCTCGAGGTTATGGACAGGTT AAGGATAAGTTATGATGCGTTGACACATGAGGCACAAGAGATATTCTTGGATATCACTTGTTTATTTATCGGAGCAAACAAAGAAAGGGCTGTCTACATG TGGAGTGATTGCAACTTTTATCCGATTAGTAAATATCTTACGAGTTTATCATGGTTCAGATATTTCGAAGCAAGTAAGAAAAAGCTCGTCGGAGACTTCA GTAATCTTCTCCCAAACTTAAGGTGGCTTAAAGTGGTCGGAAGTCATCATTTGATCAATCTTGAGTTGAAAAATCTGACAGTTTTTTATCTTCAGCATGG CACAATAACTGGGAATGCTCTAGGAGATTGTATAAAAGTTTGTCTTATGTTGGAGCTGGAGGATTTGAGTGTCATGTCGTGCAGCAGCGGGATCAACATC CCATCGTATCGCGATCATGACTGGTGGAAGGCATCCAAGTTGAAGCTTCTCGTGCTGTCATCGTCGTTGCGGGCTCTAGTCGTTTGGTCATGTGAAGAAT CTGCGTGGCTCCCGAGTCTAGAGAATTTGCAAAATTTGACCAAATTATTCATCGAGGGTTGCCCTATTGGAGAAATACGGTTAGGAATAAGGATGAAATC CTTACAATCCCTTGAGGTTATTTCCTGCTCGGATCTGGCACAAATCCACGGCCTTGGACATCTGTTGTCTTCTCCCGACTCCGAATTGCAACAGCTGACA ATCTCTTATTGCAGTGCTTCGGTTGGGGTACTATTGTTTCAAACAGATATCAAATCTTTACAAGAACTGTCCATTCAGCAGTGCCCGATGTCGGAGGTTG GTCTGGCTGGCCTGTCGAGATTGTCCTTCCTTGGAGAGATTATTACTCGGGGGTCGACTACCGCCGCCGAGTTGGCAGTGTCTGTGGATAGACACTGTCA GGTTCGGAAAGCTGAATAA
AA sequence Show only first row Show all	>Lus10029858 pacid=23159659 polypeptide=Lus10029858 locus=Lus10029858.g ID=Lus10029858.BGIv1.0 annot-version=v1.0 MNSNEDQHIDDNGGRKMIRERVSKFKVFVILDDIDEKIAFASRRDISLEEKLKQLPGTLELEVMDRLRISYDALTHEAQEIFLDITCLFIGANKERAVYM WSDCNFYPISKYLTSLSWFRYFEASKKKLVGDFSNLLPNLRWLKVVGSHHLINLELKNLTVFYLQHGTITGNALGDCIKVCLMLELEDLSVMSCSSGINI PSYRDHDWWKASKLKLLVLSSSLRALVVWSCEESAWLPSLENLQNLTKLFIEGCPIGEIRLGIRMKSLQSLEVISCSDLAQIHGLGHLLSSPDSELQQLT ISYCSASVGVLLFQTDIKSLQELSIQQCPMSEVGLAGLSRLSFLGEIITRGSTTAAELAVSVDRHCQVRKAE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51560			Disease resistance protein (TI...		Lus10029858 [exp]	0	1
					Lus10014737 [exp]	3.3	0.9780
AT1G70710		CEL1 ,AtGH9B1	CELLULASE 1, glycosyl hydrolas...		Lus10031139 [exp]	3.5	0.9663
AT1G04520		PDLP2	plasmodesmata-located protein ...		Lus10028049 [exp]	4.7	0.9780
AT3G04060	NAC	ANAC046	NAC domain containing protein ...		Lus10033699 [exp]	5.7	0.9780
					Lus10019558 [exp]	6.6	0.9780
AT4G16195			Plant self-incompatibility pro...		Lus10019768 [exp]	7.4	0.9780
					Lus10021773 [exp]	8.1	0.9780
AT1G08510		FATB	fatty acyl-ACP thioesterases B...		Lus10035900 [exp]	8.8	0.9780
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10014713 [exp]	8.8	0.7009
					Lus10039552 [exp]	9.4	0.9780

Compare expression of checked genes

Lus10029858 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.