Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61230 263 / 1e-89 LIM PLIM2c PLIM2c, GATA type zinc finger transcription factor family protein (.1) AT2G45800 253 / 2e-85 LIM PLIM2a PLIM2a, GATA type zinc finger transcription factor family protein (.1.2) AT1G01780 243 / 7e-82 LIM PLIM2b PLIM2b, GATA type zinc finger transcription factor family protein (.1) AT3G55770 238 / 5e-80 LIM WLIM2b WLIM2b, GATA type zinc finger transcription factor family protein (.1.2.3.4.5.6.7) AT2G39900 234 / 1e-78 LIM WLIM2a WLIM2a, GATA type zinc finger transcription factor family protein (.1) AT1G10200 188 / 2e-60 LIM WLIM1, SF3 WLIM1, GATA type zinc finger transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020687 [exp] 424 / 3e-153 AT3G61230 259 / 2e-88 PLIM2c, GATA type zinc finger transcription factor family protein (.1) Lus10000287 [exp] 358 / 2e-127 AT3G61230 271 / 5e-93 PLIM2c, GATA type zinc finger transcription factor family protein (.1) Lus10008476 [exp] 355 / 2e-126 AT3G61230 279 / 3e-96 PLIM2c, GATA type zinc finger transcription factor family protein (.1) Lus10014781 [exp] 249 / 3e-84 AT1G01780 313 / 5e-110 PLIM2b, GATA type zinc finger transcription factor family protein (.1) Lus10028257 [exp] 234 / 1e-78 AT3G55770 296 / 2e-103 WLIM2b, GATA type zinc finger transcription factor family protein (.1.2.3.4.5.6.7) Lus10040233 [exp] 246 / 5e-78 AT2G39910 386 / 6e-129 ARM repeat superfamily protein (.1) Lus10043462 [exp] 205 / 5e-67 AT1G10200 260 / 2e-89 WLIM1, GATA type zinc finger transcription factor family protein (.1) Lus10042140 [exp] 201 / 1e-65 AT1G10200 280 / 2e-97 WLIM1, GATA type zinc finger transcription factor family protein (.1) Lus10004230 [exp] 201 / 1e-65 AT1G10200 281 / 1e-97 WLIM1, GATA type zinc finger transcription factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G124300 [exp] 275 / 2e-94 AT3G61230 264 / 2e-90 PLIM2c, GATA type zinc finger transcription factor family protein (.1) Potri.001G107100 [exp] 263 / 1e-89 AT3G61230 256 / 6e-87 PLIM2c, GATA type zinc finger transcription factor family protein (.1) Potri.014G080900 [exp] 257 / 1e-87 AT1G01780 307 / 2e-107 PLIM2b, GATA type zinc finger transcription factor family protein (.1) Potri.002G157300 [exp] 254 / 1e-86 AT1G01780 308 / 8e-108 PLIM2b, GATA type zinc finger transcription factor family protein (.1) Potri.010G193800 [exp] 245 / 4e-83 AT3G55770 323 / 2e-114 WLIM2b, GATA type zinc finger transcription factor family protein (.1.2.3.4.5.6.7) Potri.008G063600 [exp] 236 / 9e-80 AT3G55770 324 / 1e-114 WLIM2b, GATA type zinc finger transcription factor family protein (.1.2.3.4.5.6.7) Potri.015G072400 [exp] 204 / 8e-67 AT1G10200 277 / 5e-96 WLIM1, GATA type zinc finger transcription factor family protein (.1) Potri.001G292900 [exp] 197 / 3e-64 AT1G10200 317 / 9e-112 WLIM1, GATA type zinc finger transcription factor family protein (.1) Potri.012G077200 [exp] 197 / 3e-64 AT1G10200 268 / 2e-92 WLIM1, GATA type zinc finger transcription factor family protein (.1) Potri.009G087200 [exp] 196 / 1e-63 AT1G10200 316 / 2e-111 WLIM1, GATA type zinc finger transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [flax] [poplar] Zn_Beta_Ribbon PF00412 [flax] [poplar] LIM LIM domain
Representative CDS sequence Show only first row Show all	>Lus10029859 pacid=23159841 polypeptide=Lus10029859 locus=Lus10029859.g ID=Lus10029859.BGIv1.0 annot-version=v1.0 ATGGTTTTCAGCGGAACAACCGATAAATGCAAGGCCTGCGACAAGACCGTCCATTTCATCGACATGGTCACCGCCGACAACGTTCTCTATCACAAGACTT GCTTTAAATGCAGCCACTGCAACGGCAAGCTCGTGATGTGTAGCTACTCATCAATGGATGGAGTCCTGTACTGCAAGCCCCATTTCGAACAGCTGTTCAA GGAAACTGGAAACTTCACCAAGAATTTCCAAACATCTGGAGAAAAGAAGAACAATCAGGGAACAACAACCCCAAACAAGATGGCTGCTCTGTTTTCCGGG ACACAGGACAAATGCTCCTCCTGCCACAAAACTGTCTACCCGCTCGAGAAGGTGACGATGGAAGGAGACTTCTTTCACAAGACATGTTTCCGGTGCGCAC AGGGCGGATGCGTGCTGACACACTCGTCCTATGCGGCGCTCAAGGGCGTGCTCTACTGCAAGCACCATTTCGCTCAGCTCTTCAGGGAGAAAGGTTCCTA CAGCTACATCAACAAGAAGAGTGCTGCTAATGCCGTGGAAGCGTTGAAGGCCATCGCCGAAAAAGAGGGTAACCGGGACGAGGAAGAAGACGAAGAAGAG AGGTCTGCCACTCCACGGGCGCCTGCGGTGGAGGGGGAGTTGATTGCTCAGGAGCAATAG
AA sequence Show only first row Show all	>Lus10029859 pacid=23159841 polypeptide=Lus10029859 locus=Lus10029859.g ID=Lus10029859.BGIv1.0 annot-version=v1.0 MVFSGTTDKCKACDKTVHFIDMVTADNVLYHKTCFKCSHCNGKLVMCSYSSMDGVLYCKPHFEQLFKETGNFTKNFQTSGEKKNNQGTTTPNKMAALFSG TQDKCSSCHKTVYPLEKVTMEGDFFHKTCFRCAQGGCVLTHSSYAALKGVLYCKHHFAQLFREKGSYSYINKKSAANAVEALKAIAEKEGNRDEEEDEEE RSATPRAPAVEGELIAQEQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61230	LIM	PLIM2c	PLIM2c, GATA type zinc finger ...		Lus10029859 [exp]	0	1
AT1G15910		FDM1	factor of DNA methylation 1, X...		Lus10040287 [exp]	2.2	0.9814
					Lus10032472 [exp]	3.5	0.9732
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Lus10011998 [exp]	4.9	0.9680
AT5G27870			Plant invertase/pectin methyle...		Lus10037489 [exp]	5.5	0.9631
AT3G56570			SET domain-containing protein ...		Lus10029539 [exp]	5.7	0.9653
AT4G26110		NAP1;1, ATNAP1;...	ARABIDOPSIS THALIANA NUCLEOSOM...		Lus10026197 [exp]	5.9	0.9565
AT5G15430			Plant calmodulin-binding prote...		Lus10000209 [exp]	7.3	0.9580
					Lus10018443 [exp]	7.7	0.9336
AT1G74920		ALDH10A8	aldehyde dehydrogenase 10A8 (....		Lus10004239 [exp]	8.5	0.9521
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Lus10002775 [exp]	8.5	0.9535

Compare expression of checked genes

Lus10029859 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.