Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25800 318 / 8e-101 Calmodulin-binding protein (.1.2) AT5G57580 317 / 6e-100 Calmodulin-binding protein (.1) AT5G26920 309 / 1e-97 CBP60G Cam-binding protein 60-like G (.1.2) AT2G18750 304 / 4e-95 Calmodulin-binding protein (.1.2.3) AT2G24300 291 / 2e-90 Calmodulin-binding protein (.1.2) AT4G31000 287 / 4e-89 Calmodulin-binding protein (.1.2) AT5G62570 251 / 2e-76 Calmodulin binding protein-like (.1.2) AT1G73805 239 / 4e-72 SARD1 SAR Deficient 1, Calmodulin binding protein-like (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020686 [exp] 945 / 0 AT4G25800 334 / 1e-106 Calmodulin-binding protein (.1.2) Lus10029852 [exp] 394 / 3e-122 AT2G18750 252 / 1e-71 Calmodulin-binding protein (.1.2.3) Lus10011248 [exp] 324 / 2e-102 AT5G57580 751 / 0.0 Calmodulin-binding protein (.1) Lus10018437 [exp] 323 / 4e-102 AT5G57580 746 / 0.0 Calmodulin-binding protein (.1) Lus10001630 [exp] 303 / 1e-94 AT5G57580 811 / 0.0 Calmodulin-binding protein (.1) Lus10001436 [exp] 300 / 4e-93 AT5G57580 809 / 0.0 Calmodulin-binding protein (.1) Lus10019056 [exp] 298 / 8e-93 AT2G24300 761 / 0.0 Calmodulin-binding protein (.1.2) Lus10036301 [exp] 297 / 3e-92 AT2G24300 761 / 0.0 Calmodulin-binding protein (.1.2) Lus10034121 [exp] 275 / 6e-85 AT5G62570 396 / 1e-133 Calmodulin binding protein-like (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G010700 [exp] 477 / 1e-162 AT4G25800 331 / 6e-106 Calmodulin-binding protein (.1.2) Potri.005G020200 [exp] 462 / 1e-156 AT5G57580 337 / 1e-107 Calmodulin-binding protein (.1) Potri.011G043300 [exp] 317 / 7e-100 AT5G57580 770 / 0.0 Calmodulin-binding protein (.1) Potri.011G043200 [exp] 315 / 5e-99 AT5G57580 752 / 0.0 Calmodulin-binding protein (.1) Potri.004G035100 [exp] 312 / 4e-98 AT5G57580 792 / 0.0 Calmodulin-binding protein (.1) Potri.018G095300 [exp] 310 / 4e-97 AT5G57580 820 / 0.0 Calmodulin-binding protein (.1) Potri.006G187900 [exp] 309 / 5e-97 AT2G24300 770 / 0.0 Calmodulin-binding protein (.1.2) Potri.018G111200 [exp] 308 / 2e-96 AT2G24300 759 / 0.0 Calmodulin-binding protein (.1.2) Potri.012G077000 [exp] 298 / 3e-93 AT5G62570 493 / 1e-170 Calmodulin binding protein-like (.1.2) Potri.015G071800 [exp] 296 / 1e-92 AT5G62570 499 / 4e-173 Calmodulin binding protein-like (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07887 [flax] [poplar] Calmodulin_bind Calmodulin binding protein-like
Representative CDS sequence Show only first row Show all	>Lus10029861 pacid=23159802 polypeptide=Lus10029861 locus=Lus10029861.g ID=Lus10029861.BGIv1.0 annot-version=v1.0 ATGGTGACCAAACGGCGCTCTGATCACGACAACACAACATCTTTCTGGGACGATGATGCTGCTGACCAAACCCAACAAGCCGATCAAGAGCCTCCTCCGA AACGATTCAGAAACGCTGTTAGGGATGTCCTAGGGAAGCAGTCAATGTCCGATTTCGCTTCAAGCATGGAGCCGTTCCTTCGATCCGTCATTCACGACGA GGTAGAAAAGGCCGTCCTTCGAGTGCTAAGCTGTCACCCTTCCTTCGGATCCAGAGGCTCGTTCGATGGATTGAGACCGAAAAGCGGGCTAATCCTCCAC TTTGTGAACAAACTCCCGCCTACCATCTTCACTAACGGTAGGGTCGAGGCTGAGGACGGAAATCCACTGAGGATCGTCCTCCTCGACGCTGCCAGCAACA CGATGATCGCGTCGGGCCCGCTTTCGGCCCTCAAGGTCGAGATCGTCGTCCTGAATGGCGATTTCGGGTCGGACGATTGGGAGAATTGGGGTCCGAACGA GTTCAACACCAATGTTATCAAGGAGCGTGAAGGCAGGAGGCCGTTGGTGACAGGGGAGCTCAGCATTGTGCTGAAAGACGGGGTTGGACAAGTCACTGAC GTGGTCTTCACCGACAATTCCAGCTGGCAGCGCAGCCGGAGGTTCCGGTTGGGTGCTACAGCCGTCCTGAAAAGGACCACCGCCGACGGTGAAGTTGTCA GGATTCGGGAAGCTAGGAGCGAGCCTTTCATCGTCAAGGATCACCGTGGCGAATTGTACAAGAAACACTACCCACCAAAGTTGGGAGATGAAGTGTGGCG ATTGGAGAGGATCGCCAAAGAAGGAGCATTCCACAAGCGACTGTCTAACAAAGGGATCAAAACTGTGAAGGAATTTCTACAAGCTTATATGGTTGACCAA GCTGCTCTTAGAAATATTTTGGGAGGTGGGATTTCGAATAGGATATGGGATTCGATCGTGGAGCACGCAAACACATGCATGCTAGACGAGACCAAGTTCT ACGTCTACAACGACAGTGCCCAAGGCATCAAACTTTTGTTCAACTCCGTGTACAAGCTCGTAGCCGCCATGTTTGATGGTAGCCAGAGCTACGAGCCTCT CGATAAACTAACCCCTCCCCAAAAGGTTCTGCTAGAGAACTCGAAACAGCAAGCCTACCAGAACAGAAAAGACTTGATCCTAATGGATTCACGCTCAGTT TTCAGCCCTTCAAGGCCACCTCTCCCGCCACCGATCGAAACTGAACTACTTCCCTTCCACCTCCCAATGACCAACAACAACAACCTTGATTTACACCAAT TGGAATTCGACAACTCGACAAGCTCATCATCCAACGTGTACAACAGCATCAGCATGGTGGGGAGCCAGCTGGAACTCTCGGTCCCACACCACCACCAATA CAACAACAACACGTCCAATCACTACTTCACCCATAAACACCAGTTACAAAAGCCGCCGACGGCGCCGGCAAGCTTCAAATTCGACGTCGGCGGACACTTC TCCATCCCGTCTTCGTCGTGGCCTGTTGTTTCAACGGCGGCAGCATCATCCACGGAAGAGAGCGAGAACAACAACAACAGCGCGGTGACTACTTTTCAGG CGGCGTCGCCGGCGATGTTCTTCCCGACGGCAGATGAGTTCAGGGCGGTGCTATCGACGTTCCCGAGTTTCGGCGTGGATAGAAACGAGATGCAAGTGGG GCCCGGGAGCCCCAGGGGTTATTGGTGTAAGCTCCGGGCGGCGTTGAAGTGGAGGTCCATGCTCGTCGCCAGGAGGACTTCGTGGCCGCGCCGCCAGCAA TATTCCGGCTATTTCGTGTAA
AA sequence Show only first row Show all	>Lus10029861 pacid=23159802 polypeptide=Lus10029861 locus=Lus10029861.g ID=Lus10029861.BGIv1.0 annot-version=v1.0 MVTKRRSDHDNTTSFWDDDAADQTQQADQEPPPKRFRNAVRDVLGKQSMSDFASSMEPFLRSVIHDEVEKAVLRVLSCHPSFGSRGSFDGLRPKSGLILH FVNKLPPTIFTNGRVEAEDGNPLRIVLLDAASNTMIASGPLSALKVEIVVLNGDFGSDDWENWGPNEFNTNVIKEREGRRPLVTGELSIVLKDGVGQVTD VVFTDNSSWQRSRRFRLGATAVLKRTTADGEVVRIREARSEPFIVKDHRGELYKKHYPPKLGDEVWRLERIAKEGAFHKRLSNKGIKTVKEFLQAYMVDQ AALRNILGGGISNRIWDSIVEHANTCMLDETKFYVYNDSAQGIKLLFNSVYKLVAAMFDGSQSYEPLDKLTPPQKVLLENSKQQAYQNRKDLILMDSRSV FSPSRPPLPPPIETELLPFHLPMTNNNNLDLHQLEFDNSTSSSSNVYNSISMVGSQLELSVPHHHQYNNNTSNHYFTHKHQLQKPPTAPASFKFDVGGHF SIPSSSWPVVSTAAASSTEESENNNNSAVTTFQAASPAMFFPTADEFRAVLSTFPSFGVDRNEMQVGPGSPRGYWCKLRAALKWRSMLVARRTSWPRRQQ YSGYFV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25800			Calmodulin-binding protein (.1...		Lus10029861 [exp]	0	1
AT5G51460		ATTPPA	Haloacid dehalogenase-like hyd...		Lus10031723 [exp]	3.2	0.8513
AT3G56400	WRKY	ATWRKY70, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10012870 [exp]	3.7	0.8630
AT3G23250	MYB	ATMYB15, ATY19	myb domain protein 15 (.1.2)		Lus10021185 [exp]	4.6	0.8502
AT2G30630			P-loop containing nucleoside t...		Lus10021885 [exp]	8.2	0.8393
AT2G26530		AR781	Protein of unknown function (D...		Lus10006479 [exp]	9.5	0.8330
AT1G21010			unknown protein		Lus10035664 [exp]	9.9	0.8300
AT4G12010			Disease resistance protein (TI...		Lus10042753 [exp]	13.4	0.8180
AT4G16990		RLM3	RESISTANCE TO LEPTOSPHAERIA MA...		Lus10042752 [exp]	15.1	0.7701
AT3G56400	WRKY	ATWRKY70, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10034244 [exp]	15.5	0.8341
AT1G27170			transmembrane receptors;ATP bi...		Lus10020524 [exp]	16.7	0.8113

Compare expression of checked genes

Lus10029861 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.