Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G56300 194 / 5e-64 Chaperone DnaJ-domain superfamily protein (.1) AT1G71000 123 / 4e-36 Chaperone DnaJ-domain superfamily protein (.1) AT3G14200 117 / 6e-33 Chaperone DnaJ-domain superfamily protein (.1) AT1G72416 87 / 2e-21 Chaperone DnaJ-domain superfamily protein (.1.2.3.4.5) AT1G59725 82 / 1e-18 DNAJ heat shock family protein (.1) AT3G08910 76 / 7e-17 DNAJ heat shock family protein (.1) AT4G28480 76 / 7e-17 DNAJ heat shock family protein (.1.2) AT2G20560 75 / 3e-16 DNAJ heat shock family protein (.1) AT2G41000 73 / 4e-16 Chaperone DnaJ-domain superfamily protein (.1.2) AT1G10350 74 / 9e-16 DNAJ heat shock family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020685 [exp] 308 / 8e-109 AT1G56300 200 / 1e-66 Chaperone DnaJ-domain superfamily protein (.1) Lus10017687 [exp] 78 / 2e-17 AT2G20560 551 / 0.0 DNAJ heat shock family protein (.1) Lus10030803 [exp] 77 / 4e-17 AT1G10350 434 / 2e-153 DNAJ heat shock family protein (.1) Lus10036668 [exp] 77 / 5e-17 AT3G47940 454 / 6e-161 DNAJ heat shock family protein (.1) Lus10013981 [exp] 76 / 2e-16 AT2G20560 488 / 8e-175 DNAJ heat shock family protein (.1) Lus10015402 [exp] 74 / 7e-16 AT2G20560 483 / 7e-173 DNAJ heat shock family protein (.1) Lus10013280 [exp] 73 / 1e-15 AT1G10350 422 / 5e-148 DNAJ heat shock family protein (.1) Lus10005033 [exp] 73 / 1e-15 AT3G08910 503 / 0.0 DNAJ heat shock family protein (.1) Lus10027803 [exp] 73 / 1e-15 AT3G08910 504 / 0.0 DNAJ heat shock family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G020300 [exp] 238 / 2e-81 AT1G56300 217 / 2e-73 Chaperone DnaJ-domain superfamily protein (.1) Potri.013G010800 [exp] 225 / 3e-76 AT1G56300 200 / 9e-67 Chaperone DnaJ-domain superfamily protein (.1) Potri.010G113400 [exp] 132 / 3e-39 AT1G71000 148 / 2e-45 Chaperone DnaJ-domain superfamily protein (.1) Potri.001G164700 [exp] 108 / 1e-29 AT3G14200 186 / 4e-59 Chaperone DnaJ-domain superfamily protein (.1) Potri.003G070600 [exp] 80 / 1e-18 AT3G14200 147 / 1e-43 Chaperone DnaJ-domain superfamily protein (.1) Potri.015G066100 [exp] 79 / 8e-18 AT3G47940 436 / 5e-154 DNAJ heat shock family protein (.1) Potri.006G246700 [exp] 76 / 9e-17 AT5G25530 394 / 1e-137 DNAJ heat shock family protein (.1) Potri.019G041400 [exp] 72 / 9e-17 AT5G16650 193 / 5e-65 Chaperone DnaJ-domain superfamily protein (.1) Potri.011G057601 [exp] 76 / 1e-16 AT2G20560 444 / 2e-157 DNAJ heat shock family protein (.1) Potri.018G034600 [exp] 75 / 2e-16 AT5G25530 410 / 8e-144 DNAJ heat shock family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Lus10029862 pacid=23159884 polypeptide=Lus10029862 locus=Lus10029862.g ID=Lus10029862.BGIv1.0 annot-version=v1.0 ATGGATCGGGAAGGAGGTTCAAACGGCGTCGTCGGACAATCGTCATACTACGCTGTCCTCGGGATTCGCAAGGACGCCTCCTCCTCCGATATCCGATCCG CTTACCGCCGCCTCGCCATGAGGTGGCATCCGGACAAATGGGCGAGAAATCCAGGGGCCGTGGCTGCAGACGCGAAACGGCGGTTCCAGCAAATCCAAGA GGCTTATTCCGTTCTGTCCGACCCGGGAAAGAGGTCAATGTACGACGCCGGCCTCTACGATCCTACGGAGGAGGACGACGAGGAGTTCTGCGATTTCATG CAAGAGATGATCTCGATGATGAACAATGTGAAAGACGAGGGAGACAGCTTCGAAGATCTGCAGAGGATGTTCGTGGAAATGGTGGGCGACGGAGGCGGCG GCGGCGGCGGCGGTGGAAGCTTTGAACTGAACCAGAAACCGACGGATGGGAAGAGGGCACGTGTGAACACATCGAAAGGTAATGCTGCGAAGCGTAGCTC CACTCGATGCTGA
AA sequence Show only first row Show all	>Lus10029862 pacid=23159884 polypeptide=Lus10029862 locus=Lus10029862.g ID=Lus10029862.BGIv1.0 annot-version=v1.0 MDREGGSNGVVGQSSYYAVLGIRKDASSSDIRSAYRRLAMRWHPDKWARNPGAVAADAKRRFQQIQEAYSVLSDPGKRSMYDAGLYDPTEEDDEEFCDFM QEMISMMNNVKDEGDSFEDLQRMFVEMVGDGGGGGGGGGSFELNQKPTDGKRARVNTSKGNAAKRSSTRC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G56300			Chaperone DnaJ-domain superfam...		Lus10029862 [exp]	0	1
AT2G41640			Glycosyltransferase family 61 ...		Lus10031057 [exp]	7.1	0.9494
AT2G37040		PAL1, ATPAL1	PHE ammonia lyase 1 (.1)		Lus10026518 [exp]	10.0	0.9444
AT3G61640		AGP20, ATAGP20	arabinogalactan protein 20 (.1...		Lus10041273 [exp]	13.9	0.9361
AT2G47710			Adenine nucleotide alpha hydro...		Lus10006703 [exp]	15.4	0.9339
AT1G47480			alpha/beta-Hydrolases superfam...		Lus10042662 [exp]	17.0	0.9352
AT4G39720			VQ motif-containing protein (....		Lus10016814 [exp]	18.5	0.9258
AT3G05550			Hypoxia-responsive family prot...		Lus10020658 [exp]	19.5	0.9424
AT2G47710			Adenine nucleotide alpha hydro...		Lus10006701 [exp]	23.0	0.9407
AT1G65690			Late embryogenesis abundant (L...		Lus10007364 [exp]	24.4	0.9357
AT2G37970		SOUL-1	SOUL heme-binding family prote...		Lus10027752 [exp]	29.5	0.9395

Compare expression of checked genes

Lus10029862 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.