Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16141 80 / 1e-18 GATA GATA type zinc finger transcription factor family protein (.1) AT3G16870 79 / 4e-18 GATA GATA17 GATA transcription factor 17 (.1) AT5G49300 75 / 2e-17 GATA GATA16 GATA transcription factor 16 (.1) AT3G06740 71 / 8e-16 GATA GATA15 GATA transcription factor 15 (.1) AT5G26930 70 / 1e-15 GATA GATA23 GATA transcription factor 23 (.1) AT5G56860 67 / 4e-13 GATA GATA21, GNC GATA, nitrate-inducible, carbon metabolism-involved, GATA TRANSCRIPTION FACTOR 21, GATA type zinc finger transcription factor family protein (.1) AT2G18380 65 / 5e-13 GATA GATA20, HANL1 hanaba taranu like 1, GATA transcription factor 20 (.1) AT4G36620 64 / 2e-12 GATA GATA19, HANL2 hanaba taranu like 2, GATA transcription factor 19 (.1) AT4G26150 64 / 3e-12 GATA GATA22, CGA1, GNL GNC-LIKE, GATA TRANSCRIPTION FACTOR 22, cytokinin-responsive gata factor 1 (.1) AT3G50870 61 / 3e-11 GATA GATA18, HAN, MNP MONOPOLE, HANABA TANARU, GATA TRANSCRIPTION FACTOR 18, GATA type zinc finger transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020684 [exp] 191 / 4e-62 AT4G16141 94 / 9e-24 GATA type zinc finger transcription factor family protein (.1) Lus10016849 [exp] 79 / 9e-19 AT3G06740 154 / 6e-49 GATA transcription factor 15 (.1) Lus10037721 [exp] 79 / 2e-18 AT3G06740 153 / 2e-48 GATA transcription factor 15 (.1) Lus10031464 [exp] 64 / 7e-13 AT3G24050 69 / 3e-15 GATA transcription factor 1 (.1) Lus10010027 [exp] 62 / 2e-12 AT5G49300 87 / 8e-23 GATA transcription factor 16 (.1) Lus10036329 [exp] 64 / 7e-12 AT1G02700 189 / 1e-57 unknown protein Lus10037572 [exp] 63 / 1e-11 AT4G32890 236 / 2e-76 GATA transcription factor 9 (.1) Lus10028301 [exp] 60 / 4e-11 AT3G50870 135 / 4e-39 MONOPOLE, HANABA TANARU, GATA TRANSCRIPTION FACTOR 18, GATA type zinc finger transcription factor family protein (.1) Lus10011430 [exp] 58 / 4e-10 AT4G32890 237 / 9e-77 GATA transcription factor 9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G020500 [exp] 83 / 3e-20 AT3G06740 67 / 1e-14 GATA transcription factor 15 (.1) Potri.002G199800 [exp] 77 / 7e-18 AT5G49300 112 / 1e-32 GATA transcription factor 16 (.1) Potri.008G213900 [exp] 76 / 8e-18 AT3G06740 126 / 4e-38 GATA transcription factor 15 (.1) Potri.010G001300 [exp] 74 / 8e-17 AT3G06740 135 / 2e-41 GATA transcription factor 15 (.1) Potri.014G124400 [exp] 74 / 9e-17 AT5G49300 106 / 2e-30 GATA transcription factor 16 (.1) Potri.006G229200 [exp] 67 / 4e-13 AT4G26150 111 / 3e-28 GNC-LIKE, GATA TRANSCRIPTION FACTOR 22, cytokinin-responsive gata factor 1 (.1) Potri.005G122700 [exp] 61 / 3e-11 AT3G50870 198 / 1e-62 MONOPOLE, HANABA TANARU, GATA TRANSCRIPTION FACTOR 18, GATA type zinc finger transcription factor family protein (.1) Potri.007G024500 [exp] 60 / 8e-11 AT3G50870 202 / 5e-64 MONOPOLE, HANABA TANARU, GATA TRANSCRIPTION FACTOR 18, GATA type zinc finger transcription factor family protein (.1) Potri.018G053600 [exp] 60 / 8e-11 AT4G26150 75 / 4e-15 GNC-LIKE, GATA TRANSCRIPTION FACTOR 22, cytokinin-responsive gata factor 1 (.1) Potri.018G044900 [exp] 60 / 1e-10 AT5G25830 247 / 2e-79 GATA transcription factor 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [flax] [poplar] Zn_Beta_Ribbon PF00320 [flax] [poplar] GATA GATA zinc finger
Representative CDS sequence Show only first row Show all	>Lus10029863 pacid=23159704 polypeptide=Lus10029863 locus=Lus10029863.g ID=Lus10029863.BGIv1.0 annot-version=v1.0 ATGGATCTCGGGGACAGCATGATCGAATCAAATCCGGAGGCAAAACTGCTAGGCGTTGGTAGTGAAGATCACGATGGGAAGAAGCTTTGTATCGATTGCA AGACCTCAAGGACTCCCCTGTGGAGAAGTGGACCCGCCGGCCCAAAATCGTTGTGCAACGCTTGTGGGATCAGACACAGGAAGAGGAGAAGAGCAGCCAT GGCGTTAGAAACCGCCGCCTCCGGCAAAAAACGATCAAAAAATCACCAAACCATCTCTCCCGCCGCCGCAGCCGCCGACAGCACGAGTAGCAGCGAATCC ACCACAACCTCAACTGACACAGCTAAATCCTCAGCCGTCGCCGCCGCATCCGGAACTACCAGCTACGCCGCCGCCGGTCAAGTCAGGGTGAGAGTTGTCT ACTCGGGCAAGGATAAATCAACCATGATCCAAAAGAAGAAGTCGTCGTCGTCATTGCCTCGTCCGCCGGCGCCGATCCCTTTGCGGCCGTTGGTTGTGGT GAAGAAGCAGAGGTGCCAGAGGAGAAGGAAGCTAGCAGAGGAAGAACAAGCTGCTTTCTGCTTGATGGCTCTCTCTTGCGCCTCAGTTTTCGCCTAG
AA sequence Show only first row Show all	>Lus10029863 pacid=23159704 polypeptide=Lus10029863 locus=Lus10029863.g ID=Lus10029863.BGIv1.0 annot-version=v1.0 MDLGDSMIESNPEAKLLGVGSEDHDGKKLCIDCKTSRTPLWRSGPAGPKSLCNACGIRHRKRRRAAMALETAASGKKRSKNHQTISPAAAAADSTSSSES TTTSTDTAKSSAVAAASGTTSYAAAGQVRVRVVYSGKDKSTMIQKKKSSSSLPRPPAPIPLRPLVVVKKQRCQRRRKLAEEEQAAFCLMALSCASVFA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16141	GATA		GATA type zinc finger transcri...		Lus10029863 [exp]	0	1
AT4G35050		NFC3, MSI3	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10005074 [exp]	4.2	0.9217
AT4G01560		MEE49	maternal effect embryo arrest ...		Lus10030171 [exp]	5.2	0.9259
AT3G25150			Nuclear transport factor 2 (NT...		Lus10022765 [exp]	11.0	0.9213
AT5G44500			Small nuclear ribonucleoprotei...		Lus10003498 [exp]	13.2	0.9253
AT5G67610			Uncharacterized conserved prot...		Lus10019140 [exp]	14.3	0.8683
AT3G04770		RPSAB	40s ribosomal protein SA B (.1...		Lus10037445 [exp]	18.4	0.9212
AT2G18510		EMB2444	embryo defective 2444, RNA-bin...		Lus10041728 [exp]	20.8	0.9039
AT1G50660			unknown protein		Lus10021521 [exp]	23.5	0.9009
AT3G63400			Cyclophilin-like peptidyl-prol...		Lus10018746 [exp]	25.0	0.9067
AT2G02955		MEE12	maternal effect embryo arrest ...		Lus10021646 [exp]	26.3	0.9149

Compare expression of checked genes

Lus10029863 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.