Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26980 460 / 4e-164 ATSYP41, ATTLG2A, SYP41 syntaxin of plants 41 (.1.2) AT3G05710 450 / 6e-160 ATSYP43, SYP43 syntaxin of plants 43 (.1.2) AT4G02195 395 / 3e-138 ATTLG2B, ATSYP42, SYP42 syntaxin of plants 42 (.1) AT5G46860 47 / 1e-05 SGR3, ATVAM3, ATSYP22, VAM3 SHOOT GRAVITROPISM 3, ARABIDOPSIS THALIANA VACUOLAR MORPHOLOGY 3, ARABIDOPSIS THALIANA SYNTAXIN OF PLANTS 22, Syntaxin/t-SNARE family protein (.1) AT5G16830 43 / 0.0001 ATSYP21, ATPEP12, SYP21, PEP12P syntaxin of plants 21 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031466 [exp] 514 / 0 AT3G05710 506 / 0.0 syntaxin of plants 43 (.1.2) Lus10020683 [exp] 434 / 2e-154 AT3G05710 361 / 7e-126 syntaxin of plants 43 (.1.2) Lus10015215 [exp] 226 / 2e-73 AT3G05710 223 / 3e-72 syntaxin of plants 43 (.1.2) Lus10000311 [exp] 51 / 1e-07 AT5G46860 217 / 5e-72 SHOOT GRAVITROPISM 3, ARABIDOPSIS THALIANA VACUOLAR MORPHOLOGY 3, ARABIDOPSIS THALIANA SYNTAXIN OF PLANTS 22, Syntaxin/t-SNARE family protein (.1) Lus10030953 [exp] 50 / 1e-06 AT5G46860 417 / 9e-149 SHOOT GRAVITROPISM 3, ARABIDOPSIS THALIANA VACUOLAR MORPHOLOGY 3, ARABIDOPSIS THALIANA SYNTAXIN OF PLANTS 22, Syntaxin/t-SNARE family protein (.1) Lus10040094 [exp] 50 / 1e-06 AT5G46860 419 / 1e-149 SHOOT GRAVITROPISM 3, ARABIDOPSIS THALIANA VACUOLAR MORPHOLOGY 3, ARABIDOPSIS THALIANA SYNTAXIN OF PLANTS 22, Syntaxin/t-SNARE family protein (.1) Lus10011064 [exp] 49 / 3e-06 AT1G45616 366 / 2e-111 receptor like protein 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G020800 [exp] 495 / 9e-178 AT3G05710 462 / 1e-164 syntaxin of plants 43 (.1.2) Potri.013G011100 [exp] 478 / 7e-171 AT3G05710 457 / 7e-163 syntaxin of plants 43 (.1.2) Potri.002G200400 [exp] 398 / 2e-139 AT5G26980 397 / 1e-139 syntaxin of plants 41 (.1.2) Potri.001G138500 [exp] 46 / 1e-05 AT5G46860 377 / 3e-133 SHOOT GRAVITROPISM 3, ARABIDOPSIS THALIANA VACUOLAR MORPHOLOGY 3, ARABIDOPSIS THALIANA SYNTAXIN OF PLANTS 22, Syntaxin/t-SNARE family protein (.1) Potri.003G095300 [exp] 45 / 3e-05 AT5G46860 368 / 2e-129 SHOOT GRAVITROPISM 3, ARABIDOPSIS THALIANA VACUOLAR MORPHOLOGY 3, ARABIDOPSIS THALIANA SYNTAXIN OF PLANTS 22, Syntaxin/t-SNARE family protein (.1) Potri.014G145200 [exp] 42 / 0.0003 AT5G46860 263 / 4e-88 SHOOT GRAVITROPISM 3, ARABIDOPSIS THALIANA VACUOLAR MORPHOLOGY 3, ARABIDOPSIS THALIANA SYNTAXIN OF PLANTS 22, Syntaxin/t-SNARE family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0445 [flax] [poplar] SNARE-fusion PF00804 [flax] [poplar] Syntaxin Syntaxin CL0445 [flax] [poplar] PF05739 [flax] [poplar] SNARE SNARE domain
Representative CDS sequence Show only first row Show all	>Lus10029864 pacid=23159760 polypeptide=Lus10029864 locus=Lus10029864.g ID=Lus10029864.BGIv1.0 annot-version=v1.0 ATGGCAACGAGGAATCGGACGTTGGAATTCAGGAAGTACCGAGACGCTTTGAAGAGCGTTAGGATCCCGACGAGCTCTTTGTCCTCCTCGTCATCGGCGT TGCAGCCTTTGTCCGGTGCATCCGCCAGAGGAGGCGGCGATGGTCCGGTGATTAAGATGGTCAGCAGTTCGCTACGGAAGCCTAATCGCTCCTACGCTCC TCTTAGTACTGAAGATCCTGGTAATTCCAGTAAGGGTGCATTGACAGTTGGTTTACCACCTGCGTGGGTCGACATATCTGAAGACGTAGCAGCCAATGTG CAGCATGCAAGGAAAAAGATGGCCGAGTTAGCCAAGGCCCACGCCAAAGCTTTGATGCCTTCGTTTGGAGATGGTAAAGACGATCAACACGCGATTGAGA CTTTAACCCACGAGATAACCGGCCTTATAAAACGATCGGAGAAAAAACTGCGGAGGCTTTCTACAGGCGGTCCTTCAGAAGATTCAAATATTAGGAAGAA TGTGCAGCGTTCTCTTGCTACAGACCTTCAAAGCCTATCAATGGAGCTTCGCAAGAAGCAATCAACTTACTTGAAGCGCCTTAGACAGCAGAAAGAGGGT CAAGATGGGGTTGACTTGGAAATGAACCTTAATGGTAATAGAACCAGAATTGATGACGATGGTTTAGATGACATGGTGTTCAATGAGCTCCAAAAGGCCA GAGTAAAGAAGACCGAGACATTCACCGTAGAAAGGGAAAGAGAGATCCAACAGGTCGTGGAGTCTGTAAATGAACTCGCTCAAATCATGAAGGACTTGTC AGTACTCGTGATAGACCAGGGTACCATTGTCGATAGAATAGACTACAACGTTCAGAACGTCGCAACCACAGTTGAGGAAGGACTTAAACAGCTGCAGAAG GCCGAGAGAACACAGAAGCAAGGTGGAATGGTAATGTGCGCCACGGTGCTTGTGATCATGTGCTTCATCATGCTGGTTCTTCTGATCCTCAAGGAGATTT TGTTCTGA
AA sequence Show only first row Show all	>Lus10029864 pacid=23159760 polypeptide=Lus10029864 locus=Lus10029864.g ID=Lus10029864.BGIv1.0 annot-version=v1.0 MATRNRTLEFRKYRDALKSVRIPTSSLSSSSSALQPLSGASARGGGDGPVIKMVSSSLRKPNRSYAPLSTEDPGNSSKGALTVGLPPAWVDISEDVAANV QHARKKMAELAKAHAKALMPSFGDGKDDQHAIETLTHEITGLIKRSEKKLRRLSTGGPSEDSNIRKNVQRSLATDLQSLSMELRKKQSTYLKRLRQQKEG QDGVDLEMNLNGNRTRIDDDGLDDMVFNELQKARVKKTETFTVEREREIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNVQNVATTVEEGLKQLQK AERTQKQGGMVMCATVLVIMCFIMLVLLILKEILF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05710		ATSYP43, SYP43	syntaxin of plants 43 (.1.2)		Lus10029864 [exp]	0	1
AT3G51580			unknown protein		Lus10025224 [exp]	1.4	0.8321
AT5G47960		SMG1, AtRABA4c	SMALL MOLECULAR WEIGHT G-PROTE...		Lus10014732 [exp]	4.0	0.7817
AT1G18470			Transmembrane Fragile-X-F-asso...		Lus10021710 [exp]	9.8	0.7626
AT3G51580			unknown protein		Lus10025140 [exp]	9.9	0.7694
AT3G24840			Sec14p-like phosphatidylinosit...		Lus10011853 [exp]	11.0	0.7586
AT3G59350			Protein kinase superfamily pro...		Lus10025496 [exp]	19.8	0.7352
AT2G39290		PGP1, PGS1, PGP...	phosphatidylglycerolphosphate ...		Lus10040348 [exp]	19.9	0.7481
AT5G47960		SMG1, AtRABA4c	SMALL MOLECULAR WEIGHT G-PROTE...		Lus10002725 [exp]	28.8	0.7299
AT4G16380			Heavy metal transport/detoxifi...		Lus10001913 [exp]	33.2	0.7094
AT5G05930		ATGC1	ARABIDOPSIS GUANYLYL CYCLASE 1...		Lus10009875 [exp]	39.3	0.6817

Compare expression of checked genes

Lus10029864 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.