Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27000 1010 / 0 KATD, ATK4 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) AT2G47500 993 / 0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT1G09170 893 / 0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT3G44730 559 / 0 AtKIN14h, ATKP1 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) AT1G73860 545 / 1e-177 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G63640 528 / 6e-171 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) AT1G18410 528 / 3e-170 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G41310 505 / 3e-163 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT3G10310 492 / 1e-158 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT2G22610 354 / 2e-105 Di-glucose binding protein with Kinesin motor domain (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020682 [exp] 1734 / 0 AT1G09170 843 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Lus10015212 [exp] 1276 / 0 AT5G27000 924 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) Lus10009851 [exp] 964 / 0 AT2G47500 1245 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Lus10032897 [exp] 732 / 0 AT3G44730 1302 / 0.0 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) Lus10001306 [exp] 661 / 0 AT3G44730 1240 / 0.0 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) Lus10032264 [exp] 537 / 3e-173 AT1G63640 991 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Lus10024628 [exp] 535 / 4e-172 AT1G63640 980 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Lus10002007 [exp] 510 / 2e-163 AT1G63640 941 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Lus10018049 [exp] 493 / 5e-158 AT5G27000 874 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G011500 [exp] 1243 / 0 AT5G27000 1081 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) Potri.005G021100 [exp] 1234 / 0 AT2G47500 1051 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Potri.002G201000 [exp] 1051 / 0 AT2G47500 1237 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Potri.014G125700 [exp] 1037 / 0 AT2G47500 1218 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Potri.001G467600 [exp] 742 / 0 AT3G44730 1266 / 0.0 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) Potri.011G165200 [exp] 564 / 0 AT3G44730 1300 / 0.0 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) Potri.001G104000 [exp] 550 / 5e-179 AT1G63640 1102 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Potri.003G127800 [exp] 533 / 6e-172 AT1G63640 1065 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Potri.015G047400 [exp] 519 / 1e-167 AT1G63640 908 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Potri.012G056700 [exp] 501 / 2e-160 AT1G63640 857 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00225 [flax] [poplar] Kinesin Kinesin motor domain CL0188 [flax] [poplar] CH PF00307 [flax] [poplar] CH Calponin homology (CH) domain
Representative CDS sequence Show only first row Show all	>Lus10029865 pacid=23159876 polypeptide=Lus10029865 locus=Lus10029865.g ID=Lus10029865.BGIv1.0 annot-version=v1.0 ATGGCGACGGAGGAAGCCGCTCCTTCTTTGTCTCTTGTTTCCATTGTGGAGGATGTTCTTCAGCAACACGGGATTCGACGAGCGGACATTGTTTCCGCTT CGAGGAAGATCGACGAAGCTTCGGCGAAGCGGTATGAAGCAGCAGAGTGGTTAAGGAAGACGGTAGGAATTGGTGGTGGGAGTAAAGATCTTCCGTCGCA GCCGTCTGAGGAGGAATTCAGGCTTGGATTGCGAAGTGGGATTATCTTGTGCAATGTTCTCAACAAGGTTCAACCCGGAAGAATAGCTAAGGTGGTAGAA GGCCCTGGCGATTCGTTCATGACGCCTGATGTGGCGCCACTTTCAGCATTTCAGTACTTTGAGAACATGAGGAATTTCCTTGTTGCTGCTGAGGAGATGG GGCTTCCATCATTTGAAAACTCTGACTTGGAGCAGGGAGGGAAGTCAGCAAGGGTAGTGAACTGTGTATTGGCACTGAAATCATACTATGAATGGAGGCA AAGTGGAGGGACTGGACAATGGAAGTATGGTGGAAATCCTAAACCAGGAGCCTCACCTTTTGGGAAGTTTACAAGAAAGACTGCTGAGCCGTTTGCGAAT TCTTCTTCGTCACACTGCTCATCGCCCGGTGGTGATTCTGGGAATGATCAGAATACTGAAGCAGCTGAACCTCGTTCCTTGAGCACGTTAGTCCAGGCAG CTCTTTCACATAAGAACCAGGAAGAAATTCCCAATATTGTCGAATCGATGCTGAGTAAAGTTATGGAAGAGTACGAGTGTCGTCTAGCTAGTCGAAGTGA AGTGATGAAGACAACAGAGAACGAAGTGCCAATGTCAAACCAAGAATCTTCACCTCCACGAACTCCTTCTAATGATGTGAAGCTCGAAGAAGATCAAGCT TCTCCACAGATGAATATGGAGGAATCCTTCGACAGGGAAGGTGGTCTTCGAGAGGTACCATCTCCTCAGAGGGAAAGTCTGAATCAAGAATCGAAAAGAC AGCTTGTGAAACATCAAATGTTTGTTGAACAACAACAGATGAATATTCAGGAATTGCGACGCAGCCTCCATGATACGAGAGCAGGAGTTCGGTTTTTCCA GAACAAGTACGTGGAGGAGTTCAATAGTCTAGGGAAGCACTTATATAGTCTAGCTCACGCAGCTTCAGGTTATCAACGTGTCCTTCAAGAGAATCGCAAG TTATACAATCAAGTGCAAGACCTGAAAGGAAACATTAGAGTATACTGCAGAGTTAGACCATTTTTGCCCGGGCAAGCAAGTCGGTTCAATACGGTGGATC ACATAGAGGAAGGGAATATAACGATTGCTACGCCTTCAAAGTATGGGAAAGAAGGAAGGAAAACTTTCAATTTCAACAAAGTTTTTGGACCAATGGCTAC TCAAGCCGAAGTATTTGCAGATACCGAGCCCTTGATTCGTTCTGTTCTCGACGGGTATAATGTATGTATTTTTGCTTATGGGCAAACAGGATCAGGAAAA ACTTTTACTATGACTGGGCCGAAGGAGCTAACGGAAGAAAGCCTCGGTGTCAACTTCAGGGCATTGAGCGATCTTTTCCTTTTATCAGCTCAAAGAAAAG AAGTTATCAGCTATGAAATTTCATGTCAGATGCTTGAAATTTACAATGAGCAAGTGAGGGATCTCCTTACTAGTGACGAAATACGAAACAGCTCCAACAA TGGGATCAATGTACCGGATGCTTCGCTCGTATCGGTGTCATCACCATCTGATGTCATAAACTTGATGAACACCGGGCATAAGAATCGTGCAGTGAGTGCC ACTGCGATGAACGACAGGAGTAGTAGGTCTCATAGCTGCCTGACTGTTCATGTCCAAGGAAAGGATCTAACATCTGGAAGCGTGATTCGCGGTTCCATGC ATCTAGTAGACCTGGCTGGCAGTGAGAGAGTTGATAAATCTGAGGTTACCGGAGACCGTCTAAAGGAGGCTCAACATATCAACAAATCCCTCTCTGCTTT AGGAGATGTCATTGCTTCTCTTGCAGTTAAAAGCACACATGTCCCTTACAGGAATAGTAAACTCACACAATTACTCCAAGATTCACTCGGAGGGCAAGCC AAGACGCTAATGTTTGTCCATATAAGTCCCGAGGCTGAAGCTGTTGGAGAAACACTCAGTACGTTGAAATTCGCTGAACGGGTTGCTACAGTTGAGCTTG GTGCTGCTAAGGTTAACAAGGACAGCACAGAGGTTAAAGATCTAAAGGATCAGATTTCCAGCCTCAAGGCAGCTCTAGCAAGGAAAGAAGAGATGGATCA CTCTCAGCATTCCGGATCAAGCACCCCAGAAAGATTTGGATTGAGGAACGGCGGAGCTTCTCCTTCCCAACACAGTTGGCATGGTGGTATGTCCAATGCT CATTTGCAATCAGACGAAGTCTGTAATGGCCAGGTTTCAAAGGGCTCGCTATCCATGCTACGGAGAAAAAGCTTGGATCCCCACGTTTTACGAACAGATC TACCTACATGGCCGAAGGAAGACGATAAAGAGTCATCTTCAGGTGAGTGGGTCGATAAGGCAGTGGTAAACAAGGAAATCAGTGTTGTTGAGGAATGGGA AGTGGATCCATCTCAGCAGGGTTTCGCTCGGGTATATCCTGAACAGTCCTTTCATAAACCTGCAGCAAACAGAAAGGAAAACCAGCACCAAGATTTCGAT GTAATGTCGCAGAGGAGCCATGGTTCTGACGATCTAGATGTAGGCACGAGCGATTCTTCCGAGGCGGAATCGACTTGGCAGTCGTCTAATCTTCTTAGAA TGAACAGCGCCAGCAGCCTTCCTTCTCTAACAGGATCTAAACTAAAGAAGCCAAGTCCTAGGTCAGTAAAGACCACAGAGACCAGGAGTAAGATCCCATC CTTCCAATCCATGATTCCTTCACCATCATCAGCAGCTGCAAAGAAAATACCAAATGGGGCTAGTCTGGGACTGAAGAAGCCTTCTAAACAACTTCTGGTT GATGGGAAGAGGAAAAGTGGGCTTGCAAAGTGA
AA sequence Show only first row Show all	>Lus10029865 pacid=23159876 polypeptide=Lus10029865 locus=Lus10029865.g ID=Lus10029865.BGIv1.0 annot-version=v1.0 MATEEAAPSLSLVSIVEDVLQQHGIRRADIVSASRKIDEASAKRYEAAEWLRKTVGIGGGSKDLPSQPSEEEFRLGLRSGIILCNVLNKVQPGRIAKVVE GPGDSFMTPDVAPLSAFQYFENMRNFLVAAEEMGLPSFENSDLEQGGKSARVVNCVLALKSYYEWRQSGGTGQWKYGGNPKPGASPFGKFTRKTAEPFAN SSSSHCSSPGGDSGNDQNTEAAEPRSLSTLVQAALSHKNQEEIPNIVESMLSKVMEEYECRLASRSEVMKTTENEVPMSNQESSPPRTPSNDVKLEEDQA SPQMNMEESFDREGGLREVPSPQRESLNQESKRQLVKHQMFVEQQQMNIQELRRSLHDTRAGVRFFQNKYVEEFNSLGKHLYSLAHAASGYQRVLQENRK LYNQVQDLKGNIRVYCRVRPFLPGQASRFNTVDHIEEGNITIATPSKYGKEGRKTFNFNKVFGPMATQAEVFADTEPLIRSVLDGYNVCIFAYGQTGSGK TFTMTGPKELTEESLGVNFRALSDLFLLSAQRKEVISYEISCQMLEIYNEQVRDLLTSDEIRNSSNNGINVPDASLVSVSSPSDVINLMNTGHKNRAVSA TAMNDRSSRSHSCLTVHVQGKDLTSGSVIRGSMHLVDLAGSERVDKSEVTGDRLKEAQHINKSLSALGDVIASLAVKSTHVPYRNSKLTQLLQDSLGGQA KTLMFVHISPEAEAVGETLSTLKFAERVATVELGAAKVNKDSTEVKDLKDQISSLKAALARKEEMDHSQHSGSSTPERFGLRNGGASPSQHSWHGGMSNA HLQSDEVCNGQVSKGSLSMLRRKSLDPHVLRTDLPTWPKEDDKESSSGEWVDKAVVNKEISVVEEWEVDPSQQGFARVYPEQSFHKPAANRKENQHQDFD VMSQRSHGSDDLDVGTSDSSEAESTWQSSNLLRMNSASSLPSLTGSKLKKPSPRSVKTTETRSKIPSFQSMIPSPSSAAAKKIPNGASLGLKKPSKQLLV DGKRKSGLAK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27000		KATD, ATK4	KINESIN-LIKE PROTEIN IN ARABID...		Lus10029865 [exp]	0	1
AT1G09170			P-loop nucleoside triphosphate...		Lus10020682 [exp]	1.4	0.9769
AT2G29940		ABCG31, PDR3, A...	ATP-binding cassette G31, plei...		Lus10040676 [exp]	3.7	0.9559
AT3G54100			O-fucosyltransferase family pr...		Lus10035540 [exp]	5.2	0.9464
					Lus10030082 [exp]	5.6	0.8530
AT1G02400		ATGA2OX4, ATGA2...	DOWNSTREAM TARGET OF AGL15 1, ...		Lus10025016 [exp]	6.5	0.9322
AT5G66310			ATP binding microtubule motor ...		Lus10014268 [exp]	6.9	0.9371
AT5G44390			FAD-binding Berberine family p...		Lus10026290 [exp]	7.1	0.9269
AT1G52700			alpha/beta-Hydrolases superfam...		Lus10014347 [exp]	7.3	0.8922
AT5G63180			Pectin lyase-like superfamily ...		Lus10006241 [exp]	7.7	0.8983
AT3G27440		UKL5	uridine kinase-like 5 (.1)		Lus10022289 [exp]	8.0	0.9297

Compare expression of checked genes

Lus10029865 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.