Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02330 493 / 6e-163 AtPME41, ATPMEPCRB pectin methylesterase 41, Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT1G02810 489 / 2e-161 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT2G47550 471 / 6e-155 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G10720 446 / 3e-144 Plant invertase/pectin methylesterase inhibitor superfamily (.1.2) AT5G04970 434 / 1e-139 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G43270 370 / 2e-116 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G27870 375 / 3e-116 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT2G26440 367 / 3e-115 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G51490 363 / 3e-114 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT2G45220 361 / 2e-113 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031469 [exp] 779 / 0 AT3G05610 442 / 4e-147 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10015211 [exp] 773 / 0 AT3G05610 420 / 3e-137 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10015210 [exp] 488 / 5e-161 AT4G02330 556 / 0.0 pectin methylesterase 41, Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10031470 [exp] 478 / 2e-157 AT4G02330 573 / 0.0 pectin methylesterase 41, Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10010309 [exp] 455 / 2e-149 AT1G02810 575 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10028882 [exp] 423 / 8e-136 AT5G04970 704 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10008937 [exp] 416 / 6e-133 AT3G10720 704 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1.2) Lus10013416 [exp] 372 / 2e-117 AT1G02810 519 / 2e-180 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10008203 [exp] 364 / 4e-114 AT4G02320 497 / 2e-172 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G022800 [exp] 545 / 0 AT4G02330 571 / 0.0 pectin methylesterase 41, Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.002G202600 [exp] 528 / 1e-176 AT1G02810 749 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.014G127000 [exp] 514 / 2e-171 AT1G02810 712 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.013G013400 [exp] 457 / 3e-149 AT3G05610 580 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.010G247700 [exp] 454 / 7e-148 AT3G10720 746 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1.2) Potri.008G011100 [exp] 451 / 9e-147 AT3G10720 744 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1.2) Potri.005G022900 [exp] 449 / 5e-146 AT3G05610 593 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.002G145500 [exp] 388 / 9e-124 AT2G45220 670 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.014G067100 [exp] 385 / 2e-122 AT2G45220 691 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.015G127700 [exp] 379 / 5e-120 AT2G45220 680 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF01095 [flax] [poplar] Pectinesterase Pectinesterase CL0268 [flax] [poplar] PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10029866 pacid=23159845 polypeptide=Lus10029866 locus=Lus10029866.g ID=Lus10029866.BGIv1.0 annot-version=v1.0 ATGGCCATTTTGACCACACTTTCATTCTCCTTCTTCCTTTTCTTTTCCGCAGCCCTTGCGGATTATAACTCAACCCTGGACTCCGTCTGCAACCTCACCC CACACCCAAGCTTCTGCAAGTCCTTCTTACCATCTAACAGCCATCTCTTCAATCTCCATGACTATGGAAGAATCTCACTTTCCCATTCCTTATCAAGCGC TCAAGCTTTCCTTTCCTTTCTTAACTTAACCACGTTCCCTGCCTCGAGCTTAACCGATCATCACCGTCATCGTGCTCTTCAAGACTGTATGCTCTTGTCC CAGCTTGACATCGATTTCCTCTCTCGAGCGTCGGATGTTGTGAGGAACAAGGACGTCTTGGAAGGTTATAATGAAGGTGATGATCTCATGACTTGGCTCA GTTCCATCATTACCAACCGAGAGACTTGCTTGGAAGGTCTTCTTGATCACATTTTACCGGACTCCACGAGTCCATTACTGCACCTATTGGTACCGCGCCT TTCGAATTTGAAGTTGATCTATAGCGTCTCCCTCGCCCTGCTCAAGCACGGGTGGGTCCGCGACTTGGAGGGACCAGTAGAAGGCAGATGGCTGGCTGAA AAGACGAATCCGGCCGGCCAGCTGGTTGTAAGGGACCGGTCTGTGAAGGGGAGGATGGTGCTCGATGATGAGAGAGGTGGGGAGATTCGAGTGAGTCGGA TCGTGGTGGTGAACCCTTATGGGACGGGGAATTTCAGCACGATTGGGGATGCGGTGAATGCAGCACCCGATGACACGGAGCAGAACGATGGTTACTATGT GATACACCTTGAAAGTGGTGTGTATAACGAGTATGTTACAATCCCAAAAAATAAACGTTACGTTATGATGATCGGCGATGGGATTAACCACACCGTTATA ACGGGGAATCGTAGCATGGTTGATGGATGGACAACTTTCAACTCGGCCACCTTTGCCGTTCTAGGCCGAGGATTTGTGGCGGTGAACATAACGTTCAGGA ACACAGCCGGAGCAGCGAAGCACCAAGCCGTCGCGCTAAGAAACGGAGCCGACAAGTCGACCTTCTACAGTTGCAGCTTCGAAGGCTACCAAGACACTTT GTACGCACACTCCCAGCGCCAGTTCTACAGAAACTGTGCCGTTTTCGGAACCATCGACTACATATTCGGCAATGCAGCTGCCGTTTTCCAAAACTGCAAC ATCTACTCCCGACTCCCGCTTGAGTCCCAGTTCAACACGGTCACCGCCCAGGGCAGGACCGACCCGAACCAGAACACGGGCACCTCCATCCAAAACTGCG CCGTTTTGGCCGCCAGTGATTTAGGTGCTAGTAATGGGCTTACAAGGACTTATCTAGGGAGGCCGTGGAAGGAGTACTCGAGGACGGTCGTGATGGGTTC TTATATCGATGGCTCGATTGATCCTTCTGGTTGGGCTCCGTGGAATGTGTCTGGTTTTGCGCAGGATACACTTTATTATGCGGAGTTTAATAACCGTGGA CCCGGTTCGAGTACTCGTGACCGGGTCGATTGGTTGGGTTACCATGTTGTCAATGAGAGTGATACTAGGAATTTTACGGTTTCGAAGTTATTGGGTGGAG ATTCGTGGCTGCCTTTCACTGGTGTGACGGGGGACTTTGACTTCAGCAGGCTGGACGGTTTCATGGCCGATTTGACCACGTGGCTCAGCGCTGCGATGAC GTATCAGGAAACTTGCTTGGACGGCTTCACGAACGTCAGCAGCGAGGCCGGCGACAAGATGAGAAAGTTCATGAACTCTTCCATGGAGTTGACCACCAAC GGTCTCGACATCGTCACCGGACTCAACTCTCTATTCTCCTCCTTCGACCCGGAGGCCCTCGGCGCAGGCCGCCGGCTCCTCACCGCCGAGGACGGAAGCG TCATCACCCTCCCCGTCCTCGGACATGGCCACAACCCTTACCCGACGTGGGTTCCGGAGAGATTCCGCCGCCTCCTCGAGGACTCCGACGACACCAGCAA GAAGGACAACCACAAGGAGGATTCCGACGACGAGACCGAGAAGGAGAAGAAGAAAGACGGCGGTAGCGACGATGAGGATGGCAAGAAGAAGGGCGACGAC GACGGTCATAAAGAGGACTCCGACGACGAGACCGAGGAGGAAGAGAAGAAAGATGACAAGGCGAAGGAGAAGAAGGACTTTACCAAGCCGGCGTCGGAGA TTGCTGATGTCACGGTGGCCAAGGATGGGAGTGCGGATTACACGTCGATTAATGACGCGTTGGAGGCTTTGGAGAAGAAGAGGAAGAAGAAGGATGTCGG AAAGGTGGTTGTGATGTACATTAAGGAAGGGACTTATAAGGAGTATGTTGAGGTGAAGAAGAAGCTTGATAATTTGGTCATGATCGGAGATGGTGCCGAT AAGACTATCATCACCGGTAGCAAGAACTTCATCGACGGCGTTGCCACCTATCACACTTGCACCGTCGCCGTGGCCGCCGACTACTTCTTCGCCAAGAACC TCAAGATCGAGAACACCGCCGGAGCAGACAAGCACCAGGCGGTGGCGCTCCGAGTCTCGGCCGATTTCGCCGTCTTCTACAACTGCACATTCGACGGGTA CCAAGACACGCTCTACACCCACACCAAGCGCCAATTCTACCGCGACTGCACAATCTCCGGCACCATCGACTACGTGTTCGGCGACGCCGCCGTCGTGTTC CAAAACTGCGTCTTCCAGATCCGAAAACCCATGGAGAACCAGCAGTGCATCGTCACGGCACAGGGCAGGAAGCAGCGCCACCAGCCGTCGGCGATCATCA TCCAGAACGGCACGATCACCGCCCATCCGGACATGAAGGCCGACCGGAAGGAGTTCAAGTCGTACTTGGGCCGGCCATGGAAGAATTTCTCCAGGACCAT CATTATGGAGACGTTCATCGACGATCTGATCGACCCTGAAGGATGGCTGCCGTGGATGGGTACCATCGGGACCAAGACTTGCTGGTACGGTGAGTTCGGA AATTACGGTCCCGGCGCCGATCAGAGCAAGAGGGTGACGTGGCAGGGGATTAAGAAGATTACGCCGCAGCATGCCGTGGATTTCACTCCCCAGCGGTTCA TCCGGTCCGACCCGTGGGTTAAGCCGACCGGGATACCGTACATTTCATATATGGTTAAACCGTCCAAGTCACGACGGGTTGATACGGAGTTAATCGAGTA A
AA sequence Show only first row Show all	>Lus10029866 pacid=23159845 polypeptide=Lus10029866 locus=Lus10029866.g ID=Lus10029866.BGIv1.0 annot-version=v1.0 MAILTTLSFSFFLFFSAALADYNSTLDSVCNLTPHPSFCKSFLPSNSHLFNLHDYGRISLSHSLSSAQAFLSFLNLTTFPASSLTDHHRHRALQDCMLLS QLDIDFLSRASDVVRNKDVLEGYNEGDDLMTWLSSIITNRETCLEGLLDHILPDSTSPLLHLLVPRLSNLKLIYSVSLALLKHGWVRDLEGPVEGRWLAE KTNPAGQLVVRDRSVKGRMVLDDERGGEIRVSRIVVVNPYGTGNFSTIGDAVNAAPDDTEQNDGYYVIHLESGVYNEYVTIPKNKRYVMMIGDGINHTVI TGNRSMVDGWTTFNSATFAVLGRGFVAVNITFRNTAGAAKHQAVALRNGADKSTFYSCSFEGYQDTLYAHSQRQFYRNCAVFGTIDYIFGNAAAVFQNCN IYSRLPLESQFNTVTAQGRTDPNQNTGTSIQNCAVLAASDLGASNGLTRTYLGRPWKEYSRTVVMGSYIDGSIDPSGWAPWNVSGFAQDTLYYAEFNNRG PGSSTRDRVDWLGYHVVNESDTRNFTVSKLLGGDSWLPFTGVTGDFDFSRLDGFMADLTTWLSAAMTYQETCLDGFTNVSSEAGDKMRKFMNSSMELTTN GLDIVTGLNSLFSSFDPEALGAGRRLLTAEDGSVITLPVLGHGHNPYPTWVPERFRRLLEDSDDTSKKDNHKEDSDDETEKEKKKDGGSDDEDGKKKGDD DGHKEDSDDETEEEEKKDDKAKEKKDFTKPASEIADVTVAKDGSADYTSINDALEALEKKRKKKDVGKVVVMYIKEGTYKEYVEVKKKLDNLVMIGDGAD KTIITGSKNFIDGVATYHTCTVAVAADYFFAKNLKIENTAGADKHQAVALRVSADFAVFYNCTFDGYQDTLYTHTKRQFYRDCTISGTIDYVFGDAAVVF QNCVFQIRKPMENQQCIVTAQGRKQRHQPSAIIIQNGTITAHPDMKADRKEFKSYLGRPWKNFSRTIIMETFIDDLIDPEGWLPWMGTIGTKTCWYGEFG NYGPGADQSKRVTWQGIKKITPQHAVDFTPQRFIRSDPWVKPTGIPYISYMVKPSKSRRVDTELIE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02810			Plant invertase/pectin methyle...		Lus10029866 [exp]	0	1
AT4G22285			Ubiquitin C-terminal hydrolase...		Lus10035547 [exp]	2.0	0.7727
AT1G11920			Pectin lyase-like superfamily ...		Lus10011257 [exp]	7.5	0.7603
AT3G13320		ATCAX2, CAX2	cation exchanger 2 (.1)		Lus10027136 [exp]	9.5	0.6697
AT4G35690			Arabidopsis protein of unknown...		Lus10028382 [exp]	15.7	0.7266
AT1G29010			unknown protein		Lus10015398 [exp]	29.4	0.7235
AT1G60830			RNA-binding (RRM/RBD/RNP motif...		Lus10011201 [exp]	38.6	0.6784
					Lus10036026 [exp]	42.2	0.6728
AT4G10120		ATSPS4F	Sucrose-phosphate synthase fam...		Lus10006183 [exp]	43.6	0.6910
AT4G35160			O-methyltransferase family pro...		Lus10007035 [exp]	49.2	0.7069
AT1G68460		ATIPT1	Arabidopsis thaliana isopenten...		Lus10034334 [exp]	60.7	0.6520

Compare expression of checked genes

Lus10029866 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.