Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02330 311 / 7e-100 AtPME41, ATPMEPCRB pectin methylesterase 41, Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT1G02810 298 / 5e-95 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT2G47550 277 / 4e-87 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G10720 234 / 5e-70 Plant invertase/pectin methylesterase inhibitor superfamily (.1.2) AT5G04970 225 / 1e-66 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT2G26440 164 / 1e-44 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT4G02320 163 / 2e-44 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G43270 161 / 1e-43 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G51490 160 / 3e-43 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G14310 155 / 2e-41 ATPME3 pectin methylesterase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020678 [exp] 492 / 1e-175 AT4G02330 137 / 4e-37 pectin methylesterase 41, Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10015210 [exp] 479 / 9e-166 AT4G02330 556 / 0.0 pectin methylesterase 41, Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10031470 [exp] 476 / 2e-164 AT4G02330 573 / 0.0 pectin methylesterase 41, Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10029866 [exp] 266 / 6e-79 AT1G02810 511 / 6e-170 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10020679 [exp] 224 / 7e-72 AT4G02330 187 / 3e-57 pectin methylesterase 41, Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10028882 [exp] 209 / 5e-61 AT5G04970 704 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10008937 [exp] 203 / 2e-58 AT3G10720 704 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1.2) Lus10013344 [exp] 189 / 1e-53 AT3G14310 698 / 0.0 pectin methylesterase 3 (.1) Lus10010309 [exp] 174 / 2e-48 AT1G02810 575 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G127000 [exp] 351 / 1e-115 AT1G02810 712 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.002G202600 [exp] 341 / 7e-112 AT1G02810 749 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.005G022800 [exp] 335 / 3e-109 AT4G02330 571 / 0.0 pectin methylesterase 41, Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.008G011100 [exp] 247 / 2e-75 AT3G10720 744 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1.2) Potri.010G247700 [exp] 244 / 3e-74 AT3G10720 746 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1.2) Potri.002G202500 [exp] 193 / 2e-55 AT4G02320 576 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.018G051400 [exp] 174 / 3e-48 AT3G14310 708 / 0.0 pectin methylesterase 3 (.1) Potri.006G134600 [exp] 170 / 5e-47 AT2G26440 683 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.003G072800 [exp] 164 / 2e-44 AT3G14310 795 / 0.0 pectin methylesterase 3 (.1) Potri.001G162400 [exp] 162 / 9e-44 AT3G14310 792 / 0.0 pectin methylesterase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF01095 [flax] [poplar] Pectinesterase Pectinesterase CL0268 [flax] [poplar] PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10029867 pacid=23159857 polypeptide=Lus10029867 locus=Lus10029867.g ID=Lus10029867.BGIv1.0 annot-version=v1.0 ATGGCTGCTTCGAAGCTATTACCTTTCTCTCCCATTCTCTTACTCTTCATGTTCATCACCACTTCATCTCCTGCTACCTTACCAACAATTCCTCCCTCGA CCAACAATGCAGCAGCCGCACCGGGGAACTTCTGCGCCACAACTCCATACCCTTCCTTCTGCAGATCGACTCTGCCTTACAACAAAACCAGCACAATCCA CGACTACACTAGAAAATCCGTTAAGCAATCTCTGTCTCAATCCAGACAGTTCCTCCGCTTGATTAACTATCTCCTCCGAACAGCCACCAAGTCCAAACCT TTTCAGCAGCTCATCCCTTCACTTCTCGACTGCCGATTCCTAGCTCAGGTAAACGTGGACTCACTATCCAACACCATGAACACAATCAACTCCAAGGACA ATCTTCCCAGCTTCCAAGCTAGTGACTTGCAGACCTTACTGAGTGCCACTTTAACGAATCTCGACACGTGTCTGGATGGGATTCGAGCTGCTGATTCCAG CTCTACAGCGATCAACAACCTTGTTGCTCCTCTACTCAATGGCACTAAGTACTGCAGTATTTCTCTTGCGCTTTTCGCTCACGGTTGGGTTCCCCCTCCG AGGAGGAAGAATAAGGGTGGGAGAGTGCTTAGTGAAAGGCCGATTGAAGGGCATGTTCTTGCTGAATACAATCTTGACCGTGGATTTCCATTGCAAATGT CGATCCAAGATCGTCGAGTTTTCGAGTCGTTTAGCAAGAGGAAGCTTCTCCAAGCATCAACCGGTGGAGTGTTGGTGAGCCAGATGGTGGTTGTGAACAA GAAGAAAGGACTTGGGAACTTCACTTCCATCAATGATGCTATTGATGCATCTCCAAATTCCACCACAACTGGAAACAGCTACTTCGTCATTTATGTAACG AGAGGACTGTATGAAGAATACATTTCCATCCCTAGTAATAAGCAGAACCTCATGATGATCGGAGATGGAATCGGTAAGACTACCATCACTGGTAATCGAA GCGTCGTAGATGGCTCCACCACCTTCAATTCCTCCACATTCGCTGTGAACGCAGCAGGATTCGTCGCTGTGGGGTTGACGTTTAGGAACACTGCCGGGCC GGCGAAGCACCAAGCAGTCGCCGTGAGAAACAGCGCCGACATGTCGGCGTTCTTCAACTGCAGCTTCGAAGGCTACCAGGATACACTATACGTACATTCC CTCCGCCAGTTCTACCGCGACTGTGACATCTACGCGTTCCGACGTCACGTGTGCCAGCTGCGCCCCCTTAGCCTCCATCTTCGGGAACGCGGCCGTCGTG TTCCAGAACTGCCGGATGATGTCCAGGCTCCCTCTCCCCAACCAGTTCAACGCCGTCACGGCACAGGGAAGAACCGACCCGAACCAGAACACCGGGATCT CGATCCAGAACTGCAGCATTAA
AA sequence Show only first row Show all	>Lus10029867 pacid=23159857 polypeptide=Lus10029867 locus=Lus10029867.g ID=Lus10029867.BGIv1.0 annot-version=v1.0 MAASKLLPFSPILLLFMFITTSSPATLPTIPPSTNNAAAAPGNFCATTPYPSFCRSTLPYNKTSTIHDYTRKSVKQSLSQSRQFLRLINYLLRTATKSKP FQQLIPSLLDCRFLAQVNVDSLSNTMNTINSKDNLPSFQASDLQTLLSATLTNLDTCLDGIRAADSSSTAINNLVAPLLNGTKYCSISLALFAHGWVPPP RRKNKGGRVLSERPIEGHVLAEYNLDRGFPLQMSIQDRRVFESFSKRKLLQASTGGVLVSQMVVVNKKKGLGNFTSINDAIDASPNSTTTGNSYFVIYVT RGLYEEYISIPSNKQNLMMIGDGIGKTTITGNRSVVDGSTTFNSSTFAVNAAGFVAVGLTFRNTAGPAKHQAVAVRNSADMSAFFNCSFEGYQDTLYVHS LRQFYRDCDIYAFRRHVCQLRPLSLHLRERGRRVPELPDDVQAPSPQPVQRRHGTGKNRPEPEHRDLDPELQH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02330		AtPME41, ATPMEP...	pectin methylesterase 41, Plan...		Lus10029867 [exp]	0	1
AT4G02330		AtPME41, ATPMEP...	pectin methylesterase 41, Plan...		Lus10020678 [exp]	1.4	0.9224
AT4G02330		AtPME41, ATPMEP...	pectin methylesterase 41, Plan...		Lus10020679 [exp]	5.1	0.8997
AT3G08670			unknown protein		Lus10021382 [exp]	9.4	0.8558
AT2G47550			Plant invertase/pectin methyle...		Lus10020680 [exp]	13.4	0.8540
AT3G57980			DNA-binding bromodomain-contai...		Lus10031219 [exp]	20.2	0.8529
AT3G54690		SETH3	Sugar isomerase (SIS) family p...		Lus10033902 [exp]	24.7	0.7989
AT2G20820			unknown protein		Lus10031625 [exp]	25.5	0.8577
AT1G13950		EIF5A, ATELF5A-...	eukaryotic elongation factor 5...		Lus10037129 [exp]	29.9	0.8361
AT3G11320			Nucleotide-sugar transporter f...		Lus10014832 [exp]	31.0	0.8243
AT5G43390			Uncharacterised conserved prot...		Lus10021875 [exp]	38.5	0.8397

Compare expression of checked genes

Lus10029867 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.