Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27920 389 / 9e-130 F-box family protein (.1) AT5G01720 220 / 1e-64 RNI-like superfamily protein (.1) AT4G15475 110 / 9e-26 F-box/RNI-like superfamily protein (.1) AT2G25490 88 / 3e-18 FBL6, EBF1 EIN3-binding F box protein 1 (.1) AT5G25350 84 / 5e-17 EBF2 EIN3-binding F box protein 2 (.1) AT5G23340 79 / 1e-15 RNI-like superfamily protein (.1) AT1G21410 77 / 3e-15 SKP2A F-box/RNI-like superfamily protein (.1) AT1G77000 77 / 3e-15 ATSKP2;2, SKP2B ARABIDOPSIS HOMOLOG OF HOMOLOG OF HUMAN SKP2 2, RNI-like superfamily protein (.1.2) AT3G58530 74 / 4e-14 RNI-like superfamily protein (.1) AT1G55590 62 / 3e-10 RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001264 [exp] 255 / 1e-77 AT5G01720 781 / 0.0 RNI-like superfamily protein (.1) Lus10012214 [exp] 256 / 2e-75 AT5G01720 731 / 0.0 RNI-like superfamily protein (.1) Lus10012764 [exp] 122 / 2e-29 AT4G15475 813 / 0.0 F-box/RNI-like superfamily protein (.1) Lus10030102 [exp] 96 / 6e-21 AT2G25490 683 / 0.0 EIN3-binding F box protein 1 (.1) Lus10002014 [exp] 95 / 1e-20 AT2G25490 766 / 0.0 EIN3-binding F box protein 1 (.1) Lus10002913 [exp] 92 / 1e-19 AT2G25490 760 / 0.0 EIN3-binding F box protein 1 (.1) Lus10002165 [exp] 92 / 2e-19 AT2G25490 684 / 0.0 EIN3-binding F box protein 1 (.1) Lus10020676 [exp] 83 / 2e-19 AT5G27920 59 / 2e-11 F-box family protein (.1) Lus10028645 [exp] 86 / 6e-18 AT1G21410 520 / 0.0 F-box/RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G013100 [exp] 486 / 3e-167 AT5G27920 631 / 0.0 F-box family protein (.1) Potri.005G022600 [exp] 464 / 8e-159 AT5G27920 626 / 0.0 F-box family protein (.1) Potri.016G128400 [exp] 259 / 2e-79 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.019G123400 [exp] 259 / 2e-79 AT5G01720 604 / 0.0 RNI-like superfamily protein (.1) Potri.006G105400 [exp] 259 / 3e-79 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.006G254100 [exp] 90 / 6e-19 AT2G25490 795 / 0.0 EIN3-binding F box protein 1 (.1) Potri.018G130800 [exp] 87 / 5e-18 AT2G25490 688 / 0.0 EIN3-binding F box protein 1 (.1) Potri.005G185700 [exp] 82 / 6e-17 AT1G77000 523 / 0.0 ARABIDOPSIS HOMOLOG OF HOMOLOG OF HUMAN SKP2 2, RNI-like superfamily protein (.1.2) Potri.018G027700 [exp] 82 / 2e-16 AT2G25490 820 / 0.0 EIN3-binding F box protein 1 (.1) Potri.005G088800 [exp] 80 / 5e-16 AT5G23340 567 / 0.0 RNI-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029869 pacid=23159696 polypeptide=Lus10029869 locus=Lus10029869.g ID=Lus10029869.BGIv1.0 annot-version=v1.0 ATGAAGTGGTGTATGGAGATTTCTGATCTTGGTGTTGATCTTCTCTGTGTCAAGTGTTCCAACTTGAAGGCTCTCGACATCTCTTACCTCAAGGTGACGA ATGAATCGCTGTGTTCGATTGCCTCTTTGCCGAAGCTGGAGGGTTTGACAATGGTGGGGTGTCCTTTGGTGAATGATTCCGGACTAAGATTCCTTTCGAG AGGTTCTTCGTTGAAGGAAATCGAAATATCAAGGTGCGAAGGTGTTAGTTCATCTGGTTTGGTTTCGATAATCCGAGCACATTGTAATCTTACGCGGATC AGTGCTGGTTATCTTCCAGAACTCTCTGAAGCTCTTCTGGACTGTCTGAAGAACTTGAAGAATCTAACCACACTAGTAATTCTCGGGACTCAAGTCTCCA ATGCTGTTCTCGAGTCCATCAGCATCGGTTGCATGTCTTTACACGAGATCGGATTGGTCAAATGCGTAGGAGTGACAAATGCAGGCCTTGTGCAGCTGCT GTCCTCTGGCAACGGGGAATTGAAAACCCTAGATTTGACATGCTGCAATCTACTAACTGACGTGGTGATTCGTGCATTTGCCGAGTTTTGCAGGAGCTTG GTGTGCCTGAAGTTAGAGTCTTGTTTCTTGGTCACTGATAAGGGGCTTGAGATGCTTGCATCGTCTTGTGTGCTGCTCGAGGAGGTCGATCTCACTGATT GCAGCGGGATAAATGACTACGGGCTCGAATGCCTCTCTAGATGCTCGAGACTCGTAACCGTCAAGTTAGGGCTGTGCTTTTCGATATCGGACAAGGGGGT TTCTCGAATAGCATCCAGCTGTTCGAACCTTTGTGAACTTGACCTTTACCGCTGTACCGGTATTGGCGATGGAACTTTAGCTGCATTGGCGAATGGCTGC AGGAGACTGAAGAAGCTGAACGTCTCGTACTGCACGAAGATTACCGACGAAGGGATGAAGTCTTTAGGATATTTAAAGGAACTAGTTGACCTCGAGATGC GAAGTCTTGGTAACATAACAGGTGTAGGTTTCGCAGCTTTCACGACTATGTCGAAACGACTGACAGAACTGGACATGAAGCACTGCGAGAATATTGATGA TTCTGGGTTCCTGGCACTGGCCTGTTACTGTCACAACTTGAGACAGGTGAACTTGAGCCAGTGCAACATCTCGGACTTGGCATTATCGATGGTGATGGGG AACTTGACGCGGCTGCAAGAGGCGAAGCTCGTGCACCTACCGAGCGTGACCATGAACGGGTTCGAGCTTGCGCTGAGGGCTTGCTGTGGCCGAATCAAGA AGGTGAAGTTGGTTAGTGAACTCAGGCTCTCCCTTTCGTCAGAAGTTCTCGAGATATTGCGTCGTAAGGGTTGCATTGTTAGGTGGGATTAG
AA sequence Show only first row Show all	>Lus10029869 pacid=23159696 polypeptide=Lus10029869 locus=Lus10029869.g ID=Lus10029869.BGIv1.0 annot-version=v1.0 MKWCMEISDLGVDLLCVKCSNLKALDISYLKVTNESLCSIASLPKLEGLTMVGCPLVNDSGLRFLSRGSSLKEIEISRCEGVSSSGLVSIIRAHCNLTRI SAGYLPELSEALLDCLKNLKNLTTLVILGTQVSNAVLESISIGCMSLHEIGLVKCVGVTNAGLVQLLSSGNGELKTLDLTCCNLLTDVVIRAFAEFCRSL VCLKLESCFLVTDKGLEMLASSCVLLEEVDLTDCSGINDYGLECLSRCSRLVTVKLGLCFSISDKGVSRIASSCSNLCELDLYRCTGIGDGTLAALANGC RRLKKLNVSYCTKITDEGMKSLGYLKELVDLEMRSLGNITGVGFAAFTTMSKRLTELDMKHCENIDDSGFLALACYCHNLRQVNLSQCNISDLALSMVMG NLTRLQEAKLVHLPSVTMNGFELALRACCGRIKKVKLVSELRLSLSSEVLEILRRKGCIVRWD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27920			F-box family protein (.1)		Lus10029869 [exp]	0	1
AT3G18940			clast3-related (.1)		Lus10023834 [exp]	4.0	0.8945
AT5G27920			F-box family protein (.1)		Lus10029870 [exp]	5.5	0.8815
AT1G64110		DAA1	DUO1-activated ATPase 1, P-loo...		Lus10024692 [exp]	7.5	0.8884
AT5G45580	GARP		Homeodomain-like superfamily p...		Lus10012142 [exp]	10.2	0.8890
AT2G47270	bHLH	bHLH151, UPB1	UPBEAT1, sequence-specific DNA...		Lus10002419 [exp]	15.0	0.8933
AT2G18390		HAL, ARL2, TTN5...	TITAN 5, HALLIMASCH, ARF-LIKE ...		Lus10026383 [exp]	21.5	0.8836
AT5G10720		CKI2, AHK5	CYTOKININ INDEPENDENT 2, histi...		Lus10020114 [exp]	21.6	0.8816
AT1G49390			2-oxoglutarate (2OG) and Fe(II...		Lus10008824 [exp]	23.5	0.8831
AT5G16870			Peptidyl-tRNA hydrolase II (PT...		Lus10009246 [exp]	28.8	0.8778
AT5G16950			unknown protein		Lus10021093 [exp]	29.4	0.8591

Compare expression of checked genes

Lus10029869 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.