Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27920 124 / 7e-34 F-box family protein (.1) AT5G01720 71 / 8e-15 RNI-like superfamily protein (.1) AT5G23340 56 / 8e-10 RNI-like superfamily protein (.1) AT3G07550 54 / 3e-09 RNI-like superfamily protein (.1.2) AT4G15475 45 / 7e-06 F-box/RNI-like superfamily protein (.1) AT1G80570 44 / 9e-06 RNI-like superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001264 [exp] 68 / 9e-14 AT5G01720 781 / 0.0 RNI-like superfamily protein (.1) Lus10040998 [exp] 62 / 1e-11 AT5G23340 595 / 0.0 RNI-like superfamily protein (.1) Lus10013444 [exp] 61 / 1e-11 AT5G23340 591 / 0.0 RNI-like superfamily protein (.1) Lus10041087 [exp] 57 / 3e-10 AT3G07550 417 / 2e-145 RNI-like superfamily protein (.1.2) Lus10036412 [exp] 56 / 7e-10 AT3G07550 417 / 4e-145 RNI-like superfamily protein (.1.2) Lus10012214 [exp] 54 / 7e-09 AT5G01720 731 / 0.0 RNI-like superfamily protein (.1) Lus10011626 [exp] 51 / 4e-08 AT5G27920 107 / 3e-25 F-box family protein (.1) Lus10034013 [exp] 43 / 3e-05 AT2G20790 808 / 0.0 clathrin adaptor complexes medium subunit family protein (.1.2.3) Lus10012764 [exp] 43 / 4e-05 AT4G15475 813 / 0.0 F-box/RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G022600 [exp] 156 / 2e-45 AT5G27920 626 / 0.0 F-box family protein (.1) Potri.013G013100 [exp] 150 / 4e-43 AT5G27920 631 / 0.0 F-box family protein (.1) Potri.016G128400 [exp] 76 / 1e-16 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.019G123400 [exp] 72 / 2e-15 AT5G01720 604 / 0.0 RNI-like superfamily protein (.1) Potri.006G105400 [exp] 69 / 3e-14 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.005G088800 [exp] 52 / 1e-08 AT5G23340 567 / 0.0 RNI-like superfamily protein (.1) Potri.017G056400 [exp] 52 / 2e-08 AT3G07550 438 / 2e-153 RNI-like superfamily protein (.1.2) Potri.006G238300 [exp] 49 / 1e-07 AT5G23340 98 / 1e-22 RNI-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029870 pacid=23159755 polypeptide=Lus10029870 locus=Lus10029870.g ID=Lus10029870.BGIv1.0 annot-version=v1.0 ATGTCGATCCTCGCCGTGTTGACGGAGGATTTACTAATCCGAGTGAACGCCAAGCTGGATCACGACTCTGATCGGAAATCATGGCGCCTAGTGTGCAAAG AATTCCTCCGGGTCGACTCTCTGACCCGGACAAGCCTCCGGGTCCTACGACCCGACTTCATGTTCTCCTTGCTCCGGACGTTCGCCAACGTCGAGGAGCT GGACCTCTCCGTCTGCCCTCGGGTCGATGACGGGACGCTCACTCTGCTTTCGTTTCCGGGGAATTTGAGAGGGTTGAATCTGAGCAGATCAAACGGGATA TCGTTTCGGGGACTTGCGCTGATTGCTTCGGCGTGTCCGAAGCTGGAGAGGCTCGACGTGTCGTATAACTGCCGGCTTGGTGACAGGGAAGCGGCGGGGG ATTTCTGGCATTGTTGGGTTGAAGGAGCTGAAGATGGATAA
AA sequence Show only first row Show all	>Lus10029870 pacid=23159755 polypeptide=Lus10029870 locus=Lus10029870.g ID=Lus10029870.BGIv1.0 annot-version=v1.0 MSILAVLTEDLLIRVNAKLDHDSDRKSWRLVCKEFLRVDSLTRTSLRVLRPDFMFSLLRTFANVEELDLSVCPRVDDGTLTLLSFPGNLRGLNLSRSNGI SFRGLALIASACPKLERLDVSYNCRLGDREAAGDFWHCWVEGAEDG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27920			F-box family protein (.1)		Lus10029870 [exp]	0	1
AT5G27920			F-box family protein (.1)		Lus10029869 [exp]	5.5	0.8815
AT5G10720		CKI2, AHK5	CYTOKININ INDEPENDENT 2, histi...		Lus10020115 [exp]	9.9	0.8906
AT3G50280			HXXXD-type acyl-transferase fa...		Lus10031149 [exp]	12.5	0.8897
AT4G10490			2-oxoglutarate (2OG) and Fe(II...		Lus10031150 [exp]	17.4	0.8751
AT5G45580	GARP		Homeodomain-like superfamily p...		Lus10012142 [exp]	21.2	0.8734
AT3G18200			nodulin MtN21 /EamA-like trans...		Lus10027251 [exp]	21.5	0.8723
AT1G64110		DAA1	DUO1-activated ATPase 1, P-loo...		Lus10024692 [exp]	27.7	0.8601
AT5G20080			FAD/NAD(P)-binding oxidoreduct...		Lus10030059 [exp]	31.6	0.8709
AT5G20110			Dynein light chain type 1 fami...		Lus10014484 [exp]	37.7	0.8714
AT1G31690			Copper amine oxidase family pr...		Lus10026757 [exp]	38.7	0.8740

Compare expression of checked genes

Lus10029870 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.