Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G56230 729 / 0 Protein of unknown function (DUF1399) (.1), Protein of unknown function (DUF1399) (.2) AT2G22660 132 / 6e-32 Protein of unknown function (duplicated DUF1399) (.1), Protein of unknown function (duplicated DUF1399) (.2) AT4G37900 126 / 1e-29 Protein of unknown function (duplicated DUF1399) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020675 [exp] 1369 / 0 AT1G56230 747 / 0.0 Protein of unknown function (DUF1399) (.1), Protein of unknown function (DUF1399) (.2) Lus10019239 [exp] 124 / 1e-28 AT2G22660 747 / 0.0 Protein of unknown function (duplicated DUF1399) (.1), Protein of unknown function (duplicated DUF1399) (.2) Lus10004273 [exp] 119 / 2e-27 AT2G22660 679 / 0.0 Protein of unknown function (duplicated DUF1399) (.1), Protein of unknown function (duplicated DUF1399) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G013000 [exp] 928 / 0 AT1G56230 777 / 0.0 Protein of unknown function (DUF1399) (.1), Protein of unknown function (DUF1399) (.2) Potri.002G108900 [exp] 123 / 2e-28 AT2G22660 696 / 0.0 Protein of unknown function (duplicated DUF1399) (.1), Protein of unknown function (duplicated DUF1399) (.2) Potri.015G042800 [exp] 121 / 6e-28 AT4G37900 795 / 0.0 Protein of unknown function (duplicated DUF1399) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07173 [flax] [poplar] GRDP-like Glycine-rich domain-containing protein-like
Representative CDS sequence Show only first row Show all	>Lus10029871 pacid=23159784 polypeptide=Lus10029871 locus=Lus10029871.g ID=Lus10029871.BGIv1.0 annot-version=v1.0 ATGCCTCTATGGTCGCCTCATCAATTCGGTCATCGGCCAATTCTGATTCTATTTGGGAAAGATTCTTTCAGTTGGATTATCAGGGGATCGTATAAGCCAT TTGAATTCTCGTCCAAAAAGGATTTGTACTTCAAGTCATGTGAACCACATTTGCTTGACCGAAACAAAAAGCCTTCTTCCAATACAATGATTCCTCTTCT TACCAAATCCCACCACTTCCATTTCATCATTCCTCAACTCCCCACTATGCCGGCGACTGAGAATGGATCCACCTCCTCCTCCTCCTCCTCCTCCGCCAGA CTAATCAACTCCTCCGACCACTTCTCCTCCACCAGATCCTTCGCCGACCTGCCGGAGCTCCAGTCCATCCGCCTTAGCTTCGACATCGTCTCCGCCGCCC GGAGGAACATCGGGTTCTTGAGGAACGTCGACGACTCACTCTGGCTTCACGAGCCTGCCTATCTTGCTGAAGCTGTGCGAAGGTATGATGAGCTTTGGAT GCCGTTGGTTTCTGAGTTGACGATCAACGGCAGTAGTAGCAATGTTGGGTCAATGGTTCCGATGGTGCTTCCTCCTTTTGATGTTGAGTGGGTCTGGTTC TGTCACTCTTTGAATCCGAGAATTTATAGGGAGTACTGCCAGCAACGATTCTCGAGGCTGATTGGGAAGCCATCGATCTTCGACGAGGAAAACGAAGAGT ATGCTTTGATGAGATGCAAGCAGCTATGGCTTCAAAAGTACCCAAACCAGCCATTTGAGAACGAGGCGTCCGAGTCAACATCAGCTACCAATTGTGCACA AGAAGAACTGATGAAGGAGGTGAAGAAGAACAGACACATCTACAAGAGGTTCTGTTGGCCTTACATGTCCGAAATCGTGTACCTGATCGCGGCTAAGCAG CGGTACAAGGGCTTCTTGTTCTTGTTGCGGAGCTACATTGATGGCTGTTCCAGCTCTTCTTCTTCCACATCGTGTTCGAAATTGGTTCCGAGCTTGGACA TCTTGCTAATGTGGATCACACACCAGAGTTACCCTACAGTATATGCACAAGATTTGAAAGAGATGGAAGCTGCTGATATGGTTGAAATGGTGGTGGGATT GTGGGGCACAGCTGAAGAAAACAATTTGCAAGAAACAAAAAACTTGTGGGACAAGGTATTCAATCGACCCTACGAAAAGGCTGGTGGAGCCGTCGAATTC AGTAGGCTTAGCACTGCAATAATAAAGCAGCCACCAGTTTACTGGGAAGTCTCTGATAGTGATGTCAACACCAAGTACAAGTCCCTCCTCCCCAGATTCC TCCTCGAGACCTGTGTTTTTGTGAGGCTCAGCTCTGGGAACTCTGATCATGTTCGGACAATGAAAGACGACGTTATCACGAAGAACAAGTTCCTGCGGGT GAGAATGGTTAGATGTCACAAGGAGCTGAAGATTGACAACCCTGGTGCCAGTTTCCTCCACGAATCATGGAGGAAACTGGGACCGTCGTTGTACTGTGAG TTCGGGACAAGGGGGGTTGTAGTCGAGCTTCGTAGGAAGGGAGGAGGGATCTGTTTCAAGTCGACCAAAGTGGATGATAGCGCTACGTTTCTATGGAACG ATATGCTTAGAGCTCCGTCTCTTAGCTTGGAGAGGAAGATTGGTCAAGGATTCAGGGCGGTTGCTTCAATGACGCCTCCTGTCCAAGCCCCTTACCTTTT GAAATGTGTTCCTGATCGGGTGACTGATGATTCAGGGGCTATGATCTCGGATGTGATCCTGAGGATGAACAATTACAAGCCTCAGGAAGGCAGGTGGCTG TCTAGAACTGTTCTTGATCACGCTGGGAGGGAGTGTTTCGTTGTGAGAATGAGAGTGGGAGGTGGGTTTTGGAGGAGAGGAGGCGAAACACCTGCAGCTG TGAAACGGGACGACAGGATTGTCGAAGTACGTGAAGGGTCTTGGTCCTACGTCGCTGGCTCCATCGGTAGAGCACCTGAGAAAGTAGTTGGAACGGCAAC ACCTAAGGAACCTCCAGAGGATTGGGAAGCTGCTTGGCTTTTCTCAACCGGGGAGGAGCTTCTAGTTTCCACTAGATCATCATCGTCTTCTAATTCGATC CATGATCTTAGATTCCGCTTCTTGAATCAATCATCATCATCTTCATCTTCGGTAAGGCTGTTGACAGGAAGGAAAATGCAGTACAAGGCAAGCAACAGCG AAGAACAAGAAGAAGCAGAATCCGGTTTCGTAACTTTGGTCCGATACACAGAAGACGATCCAATAGGAAAGGCAACAGCTTTACTAAACTGGAAGCTCCT GATCATGGAGTCGCAGCCCGAAGAAGATGCAGTCTTGGTCCTCCTAATCTGCATCGCCATCCTGAGAAGCGTGTCCGAAATGAGGAAGGAAGATGTCGGG AAGTTGCTCATCAGGAGGAGAGTTAAGGAAGCTAAACTGGGAGATAGAGATTGGGGTTCAGTCATCATGGATCTTTCGGACTCAGTTTCGCGTTCTTCAT CTTCGTCGGCTTACCTCCAGCCGTGGTACTTGGACGACAATGTGAAGATCGCGGTGTGTTCTGATCGAGGAGAGAACGGTGTCAGCAGCCAGCATCAACA GCCGGTTGCGAGCTATTCTTTGGTTGAAGGCGGGGATAAGTTGTACAAGAAAGGGATCATAATGTGA
AA sequence Show only first row Show all	>Lus10029871 pacid=23159784 polypeptide=Lus10029871 locus=Lus10029871.g ID=Lus10029871.BGIv1.0 annot-version=v1.0 MPLWSPHQFGHRPILILFGKDSFSWIIRGSYKPFEFSSKKDLYFKSCEPHLLDRNKKPSSNTMIPLLTKSHHFHFIIPQLPTMPATENGSTSSSSSSSAR LINSSDHFSSTRSFADLPELQSIRLSFDIVSAARRNIGFLRNVDDSLWLHEPAYLAEAVRRYDELWMPLVSELTINGSSSNVGSMVPMVLPPFDVEWVWF CHSLNPRIYREYCQQRFSRLIGKPSIFDEENEEYALMRCKQLWLQKYPNQPFENEASESTSATNCAQEELMKEVKKNRHIYKRFCWPYMSEIVYLIAAKQ RYKGFLFLLRSYIDGCSSSSSSTSCSKLVPSLDILLMWITHQSYPTVYAQDLKEMEAADMVEMVVGLWGTAEENNLQETKNLWDKVFNRPYEKAGGAVEF SRLSTAIIKQPPVYWEVSDSDVNTKYKSLLPRFLLETCVFVRLSSGNSDHVRTMKDDVITKNKFLRVRMVRCHKELKIDNPGASFLHESWRKLGPSLYCE FGTRGVVVELRRKGGGICFKSTKVDDSATFLWNDMLRAPSLSLERKIGQGFRAVASMTPPVQAPYLLKCVPDRVTDDSGAMISDVILRMNNYKPQEGRWL SRTVLDHAGRECFVVRMRVGGGFWRRGGETPAAVKRDDRIVEVREGSWSYVAGSIGRAPEKVVGTATPKEPPEDWEAAWLFSTGEELLVSTRSSSSSNSI HDLRFRFLNQSSSSSSSVRLLTGRKMQYKASNSEEQEEAESGFVTLVRYTEDDPIGKATALLNWKLLIMESQPEEDAVLVLLICIAILRSVSEMRKEDVG KLLIRRRVKEAKLGDRDWGSVIMDLSDSVSRSSSSSAYLQPWYLDDNVKIAVCSDRGENGVSSQHQQPVASYSLVEGGDKLYKKGIIM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G56230			Protein of unknown function (D...		Lus10029871 [exp]	0	1
AT2G15790		CYP40, SQN	SQUINT, CYCLOPHILIN 40, peptid...		Lus10027924 [exp]	1.0	0.8955
AT1G75410	HD	BLH3	BEL1-like homeodomain 3 (.1.2)		Lus10033192 [exp]	5.5	0.8443
AT1G31940			unknown protein		Lus10010425 [exp]	5.5	0.8387
AT3G47700		MAG2	maigo2, RINT-1 / TIP-1 family ...		Lus10024240 [exp]	7.5	0.8190
AT1G75410	HD	BLH3	BEL1-like homeodomain 3 (.1.2)		Lus10010633 [exp]	8.2	0.8386
AT3G14280			unknown protein		Lus10037453 [exp]	8.8	0.8313
AT1G60750			NAD(P)-linked oxidoreductase s...		Lus10041185 [exp]	9.7	0.8002
AT3G04580		EIN4	ETHYLENE INSENSITIVE 4, Signal...		Lus10005517 [exp]	9.9	0.7362
AT3G52525	OFP	ATOFP6, OFP6	ARABIDOPSIS THALIANA OVATE FAM...		Lus10005206 [exp]	10.9	0.8192
AT2G15860			unknown protein		Lus10021000 [exp]	11.2	0.8005

Compare expression of checked genes

Lus10029871 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.