Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09155 248 / 6e-82 ATPP2-B15 phloem protein 2-B15 (.1) AT1G56240 248 / 8e-82 ATPP2-B13 phloem protein 2-B13 (.1) AT1G56250 243 / 8e-80 ATPP2-B14 phloem protein 2-B14 (.1) AT2G02360 179 / 3e-55 ATPP2-B10 phloem protein 2-B10 (.1) AT1G80110 178 / 6e-55 ATPP2-B11 phloem protein 2-B11 (.1) AT5G24560 177 / 1e-54 ATPP2-B12 phloem protein 2-B12 (.1) AT2G02240 177 / 1e-53 MEE66 maternal effect embryo arrest 66, F-box family protein (.1) AT2G02250 173 / 3e-52 ATPP2-B2 phloem protein 2-B2 (.1) AT2G02230 170 / 6e-51 ATPP2-B1 phloem protein 2-B1 (.1) AT2G02340 160 / 2e-47 ATPP2-B8 phloem protein 2-B8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020674 [exp] 496 / 8e-180 AT1G09155 266 / 7e-89 phloem protein 2-B15 (.1) Lus10020673 [exp] 437 / 2e-156 AT1G09155 272 / 2e-91 phloem protein 2-B15 (.1) Lus10031484 [exp] 362 / 7e-126 AT1G09155 260 / 1e-85 phloem protein 2-B15 (.1) Lus10015208 [exp] 349 / 2e-121 AT1G09155 270 / 2e-90 phloem protein 2-B15 (.1) Lus10031473 [exp] 318 / 6e-110 AT1G09155 228 / 1e-74 phloem protein 2-B15 (.1) Lus10015209 [exp] 292 / 3e-99 AT1G09155 209 / 1e-66 phloem protein 2-B15 (.1) Lus10031472 [exp] 234 / 2e-77 AT1G09155 177 / 4e-55 phloem protein 2-B15 (.1) Lus10042713 [exp] 204 / 2e-64 AT2G02230 235 / 1e-75 phloem protein 2-B1 (.1) Lus10018171 [exp] 199 / 6e-62 AT2G02240 219 / 2e-69 maternal effect embryo arrest 66, F-box family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G022000 [exp] 345 / 4e-120 AT1G09155 290 / 4e-98 phloem protein 2-B15 (.1) Potri.013G012600 [exp] 334 / 1e-115 AT1G09155 281 / 1e-94 phloem protein 2-B15 (.1) Potri.006G267000 [exp] 212 / 2e-67 AT2G02240 239 / 1e-77 maternal effect embryo arrest 66, F-box family protein (.1) Potri.018G015800 [exp] 211 / 5e-67 AT2G02240 242 / 1e-78 maternal effect embryo arrest 66, F-box family protein (.1) Potri.018G016000 [exp] 201 / 3e-63 AT2G02250 220 / 2e-70 phloem protein 2-B2 (.1) Potri.006G266900 [exp] 193 / 3e-60 AT2G02240 215 / 2e-68 maternal effect embryo arrest 66, F-box family protein (.1) Potri.018G016100 [exp] 186 / 1e-57 AT2G02250 217 / 2e-69 phloem protein 2-B2 (.1) Potri.001G050100 [exp] 185 / 2e-57 AT2G02360 219 / 5e-71 phloem protein 2-B10 (.1) Potri.013G012666 [exp] 119 / 7e-33 AT1G09155 120 / 2e-33 phloem protein 2-B15 (.1) Potri.014G075800 [exp] 105 / 2e-26 AT3G61060 397 / 4e-140 phloem protein 2-A13 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029872 pacid=23159853 polypeptide=Lus10029872 locus=Lus10029872.g ID=Lus10029872.BGIv1.0 annot-version=v1.0 ATGGAGTTGGTCAATGCCATCCCTGAAGACTGTCTCTCTACAATCCTCTGTTTCACTTCCCCACAAGACGCCTGCCGGTCATCTGCCGTCTCCGCCGCCT TCCAATACGCCTCTACCTCCGACGCCGTCTGGGAGCGCTTCTTACCCTCCGATTACCGCCGCATTGTCGCCGGTTCCTTCCCGACGGTTCAATTCTCCTC CAAGAAGGAGCTCTTCCGCCGCCTCTGCGACTCTGTTCTCGTCGACGGCGGCCTCAAGAGGTTTAAGCTGGAGAAATCAACCGGGAAGAAATGTTACGAA TTGTCCGCCAGAGATCTTTCCATGACTTGGAGCAACGAATCAATGCACTGGACTTGGACTTCTAGACCCGAATCAAGGTTCTCGGAAGTGGCGGTACTAA GAACAATGTCGTGGCTAGAAATCGAAGGCAAGATCAGCACCCAAATGCTAACACCCAACACAAAGTACGGAGCTTTCCTAATCATGAAGATCTCGGACCA GGCATTTGGGCTCGATTTGATGCCGTCGGAGACGTCGGTTCAAGTTGGCGGTACGGTGGTCTGTAGTAGCAACACGGCGTACCTCCGGTGTCGCCGGGAA AACATCCACGTAGAGATGATGGAGAGGCTGATGTACGGACACCGGACGGAGGCGCTGAAATCCACGGTGGGCGGCGGCGGAGGGGAGAGGAGGTTGCCGG CGGATAGAGAGGATGGGTGGTTGGAGATTGAGATTGGAGAGTTTTGTAGTGGTGAATGCGGCGGTGAAGAAGTGAAGATGAATTTGAAGGAAGTGAAGGG GCATCATTTGAAAGGTGGGCTAATTGTTGAAGGAATTGAAGTCAGGCCTAAACACTAA
AA sequence Show only first row Show all	>Lus10029872 pacid=23159853 polypeptide=Lus10029872 locus=Lus10029872.g ID=Lus10029872.BGIv1.0 annot-version=v1.0 MELVNAIPEDCLSTILCFTSPQDACRSSAVSAAFQYASTSDAVWERFLPSDYRRIVAGSFPTVQFSSKKELFRRLCDSVLVDGGLKRFKLEKSTGKKCYE LSARDLSMTWSNESMHWTWTSRPESRFSEVAVLRTMSWLEIEGKISTQMLTPNTKYGAFLIMKISDQAFGLDLMPSETSVQVGGTVVCSSNTAYLRCRRE NIHVEMMERLMYGHRTEALKSTVGGGGGERRLPADREDGWLEIEIGEFCSGECGGEEVKMNLKEVKGHHLKGGLIVEGIEVRPKH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09155		ATPP2-B15	phloem protein 2-B15 (.1)		Lus10029872 [exp]	0	1
AT5G15430			Plant calmodulin-binding prote...		Lus10000141 [exp]	1.0	0.9963
AT4G28110	MYB	ATMYB41	myb domain protein 41 (.1)		Lus10033738 [exp]	1.4	0.9957
					Lus10019410 [exp]	3.5	0.9778
AT1G57790			F-box family protein (.1)		Lus10004476 [exp]	3.7	0.9742
AT1G11340			S-locus lectin protein kinase ...		Lus10036139 [exp]	3.9	0.9890
AT2G27410	B3		Domain of unknown function (DU...		Lus10027284 [exp]	4.5	0.9880
AT5G49340		TBL4	TRICHOME BIREFRINGENCE-LIKE 4 ...		Lus10037726 [exp]	4.5	0.9882
					Lus10043307 [exp]	5.8	0.9703
					Lus10015828 [exp]	6.0	0.9866
AT1G68470			Exostosin family protein (.1)		Lus10005567 [exp]	6.0	0.9695

Compare expression of checked genes

Lus10029872 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.