Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05630 1156 / 0 PLDP2, PDLZ2, PLDZETA2 PHOSPHOLIPASE D ZETA 2, phospholipase D P2 (.1) AT3G16785 1147 / 0 PLDZ1, PLDZETA1, PLDP1 PHOSPHOLIPASE D ZETA1, PHOSPHOLIPASE D ZETA 1, phospholipase D P1 (.1) AT5G25370 114 / 9e-26 PLDALPHA3 phospholipase D alpha 3 (.1) AT4G35790 103 / 3e-22 ATPLDDELTA ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) AT1G52570 100 / 3e-21 PLDALPHA2 phospholipase D alpha 2 (.1) AT4G00240 98 / 1e-20 PLDBETA2 phospholipase D beta 2 (.1) AT2G42010 97 / 3e-20 PLDBETA1 phospholipase D beta 1 (.1) AT3G15730 95 / 1e-19 PLDALPHA1 phospholipase D alpha 1 (.1) AT1G55180 94 / 2e-19 PLDALPHA4, PLDEPSILON phospholipase D alpha 4 (.1) AT4G11830 92 / 1e-18 PLDGAMMA2 phospholipase D gamma 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020672 [exp] 1827 / 0 AT3G05630 1393 / 0.0 PHOSPHOLIPASE D ZETA 2, phospholipase D P2 (.1) Lus10016830 [exp] 1165 / 0 AT3G16785 1586 / 0.0 PHOSPHOLIPASE D ZETA1, PHOSPHOLIPASE D ZETA 1, phospholipase D P1 (.1) Lus10037708 [exp] 859 / 0 AT3G16785 885 / 0.0 PHOSPHOLIPASE D ZETA1, PHOSPHOLIPASE D ZETA 1, phospholipase D P1 (.1) Lus10041787 [exp] 99 / 1e-20 AT1G52570 1087 / 0.0 phospholipase D alpha 2 (.1) Lus10026375 [exp] 98 / 2e-20 AT2G42010 1154 / 0.0 phospholipase D beta 1 (.1) Lus10039806 [exp] 98 / 2e-20 AT3G15730 1389 / 0.0 phospholipase D alpha 1 (.1) Lus10005627 [exp] 97 / 2e-20 AT4G35790 969 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Lus10036361 [exp] 97 / 3e-20 AT1G55180 968 / 0.0 phospholipase D alpha 4 (.1) Lus10018575 [exp] 97 / 4e-20 AT3G15730 1388 / 0.0 phospholipase D alpha 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G012300 [exp] 1337 / 0 AT3G16785 1437 / 0.0 PHOSPHOLIPASE D ZETA1, PHOSPHOLIPASE D ZETA 1, phospholipase D P1 (.1) Potri.008G211100 [exp] 1229 / 0 AT3G16785 1622 / 0.0 PHOSPHOLIPASE D ZETA1, PHOSPHOLIPASE D ZETA 1, phospholipase D P1 (.1) Potri.010G006300 [exp] 1188 / 0 AT3G16785 1607 / 0.0 PHOSPHOLIPASE D ZETA1, PHOSPHOLIPASE D ZETA 1, phospholipase D P1 (.1) Potri.003G015000 [exp] 99 / 7e-21 AT4G35790 1088 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.005G105600 [exp] 99 / 8e-21 AT4G35790 1289 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.002G016100 [exp] 98 / 2e-20 AT4G35790 1194 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.005G246000 [exp] 97 / 2e-20 AT4G35790 1170 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.007G060300 [exp] 97 / 2e-20 AT4G35790 1281 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.003G037700 [exp] 97 / 3e-20 AT1G55180 1031 / 0.0 phospholipase D alpha 4 (.1) Potri.002G152100 [exp] 97 / 5e-20 AT2G42010 1438 / 0.0 phospholipase D beta 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0479 [flax] [poplar] PLD PF00614 [flax] [poplar] PLDc Phospholipase D Active site motif
Representative CDS sequence Show only first row Show all	>Lus10029873 pacid=23159651 polypeptide=Lus10029873 locus=Lus10029873.g ID=Lus10029873.BGIv1.0 annot-version=v1.0 ATGTCAGCGGTGGAGTCGGCGAGGGAGCCACTCCTTTGCAGCAACGGAGCAAATCATTACTCCGACGACGGTAAACCACCAGCGTCGACATTGATTTACC AGTCGTGTTCCTTCCGGCAGTTCCCGGAGCCAGGCTGGATTTTTGACGAATTGCCCAAAGCTTCGATTGTTTCCGTGTCGAGGCCCGACACAGGGGATAT AAGTCCCATGTTGTTGTCCTACACCATTGAGTTGCAGTACAAACAGTTCAATCTTGCTTCTGCTGGGTTTTGGATTGGAAATGAAATGAGCCTGGATCAT CAAGTAGCAGTAACACAAGATGCTGAGGAGCCTGATGATGGAGCAGTTCCTTTACACCACGAAGATACTACTGTTCGAAGCAGAAATGTGCCCTCAGCTG CTGCATTGCCTATCATCCGTCCAACATTAAGAGGGCAGCAAGCGATATCGGAGAATGCTAAGGCAGCAATGCAGAACTACTTGAACCATTTCCTTGGAAA CATGGACATTGTCAACTCTAGAGAGGTATGCAAATTTCTCGAGGTATCTAAGATGTCGTTTTCGAGGGAGTATGTTCCGAAGTTGAAAGAAGGGTATGTC ATGGTGAAGCATGTCTCGTTGAGTGCCTCGAGGGACAGCAATGCTGATAGAAATTGTTGCCCGTGCCAATGGTTTTCTTGTTGTAACAACAATTGGTCAA AGGTTTGGGCAGTTCTGAAACCCGGGTTCTTAGCCTTCTTGCCAGACCCTTTTGACACTAAGCTATTAGACATTGTTGTCTTTGACATTCTAAGTGAAGG TGAAGGAGGATCACAAACACTACTCTCGAGCCAGATTAAGCAACGAAATCCTTTACGGTACGCGTTTCAGGTTTCCTCCGGTAACCGGAGCATAAAAGTA AGAACAGCAAGTACTGATAAAGTCAAAGGATGGATCGCTGTTATAAACGATGCTTCGTTAAGGCCGGTTGATGGCTGGTGTCATCCTCACCGGTTCGGTT CCTTTGCTCCTCCAAGGGGTCTAACCAATGATGGAAGTCGAGCTCAGTGGTTTGTAGATGGTGAAGTATCTTTCGAAGCAATTGCTTCAGCTATAGAGGA TGCTAAATCCGAGATATTCATTACTGGCTGGTGGCTTTGCCCTGAACTGTATCTAAGCTCTCACAGCAAGAGAAGGCTTCTCGACATACACGAGAACGTT AAAGTGCTCCGATATCCAGACCATCTAGCAACCGGTGTCTATCTATGGTCTCACCACGAAAAGCTCGTAATCATCGACTACCAAGTATGTTTCATTGGGG GTTTAGATTTATGCTTTGGCCGTTACGACACCATTGAGCATAGAATCGGTGATCATCCTGCTCATGTATGGCCCGGGAAAGACTACTACAATCCAAGAGA GATTGAACCGGATTGTTGGGAGGACATGATGAAAGATGTGCTGGATCGGAGAAAGTATCCACGAATGCCATGGCACGATGTCCAATGTGCTATATGGGGG CCTCCTTGCCGCGACATTGCCAGACATTTTGTTCAACGATGGAACCATGCCAAGAGAAGCAAAGCTCCACATGAGCAAGCAATTCCACTGTTGATGCCTC ACCACCACATGGTTCTCCCTCATTACTTGGGAAGAAGCTATGATATAGACATCGACAGCAATCACTTCGAAGACTTTGACAAGCAGAAAGACTTGAACCG ACAGGACTCGTTCTCGTCATTATTATTATCCCCGTTCGAAAACGTGCCATTGCTCTTGCCTCAAGAAGCAGACGATAAGATTGATGACTTACTTGCCGAT CACTCAACTGAAGCAAAGGAACCTATATCCTTTTCCTTCCAGAATCCAAAAGCTGAATCAACAGTAGCATCAGTAGACGAACTTGCCTTCATGGATATAC ACAGTAACAAGCAATTATCAGACGAATCGTCAGAAGCATCCGGGGAAGACGGTCATGTTGAATTCCCCTCCTCCTTTGGTGGTTACGAACAAATCGGTCC TCGTGTTCAATGCCATTGCCAGGTCATACGAAGTGTCGGTCAATGGTCTGCTGGAGCTAGCCATACTGAAGAAAGCATACACAATGCATATTGTACTCTC ATTGAAAATGCTGAACACTACATATACATAGAGAACCAGTTCTTCATTTCAGGTCTTAACGATGACGAAATCATCCAGAACCGCGTCCTAGAAGCATTGT ACAGACGAATCCTGCGAGCACATGAAGAACAGAAGTCTTTTCGGGTTATCGTTGTCATACCACTCTTACCAGGCTTCCAGGGAGGAATTGATGATAGCGG CGCAGCGACTGCACGAGCGATAATGCATTGGCAATATCGAACCATTTCGAGAGACAAAACATCTATACTGTATCATCTCAATGCTTTGCTAGGCCATAAA GCACATGACTACATTTCCTTTTTCGGCCTAAGGACGTACGGTAGGCTTTCAGATGGAGGTCCCATTGCCACAAGTCAGGTGTATGTGCACAGCAAGGTTA TGATAATCCACGATCGTTCTGCCTTCATCGGATCATCCAACATCAACGACAGAAGTTTGCTCGGATCTAGAGACTCCGAGATTGGGGTGTTGATCGAAGA CAAGGAGTTCGTAGAGTCATCCATGAACGGAAAGCCTTGGAGGGCTGGCAAACTTTCATACACCTTGAGGTGTTCGCTTTGGTCCGAGCATCTTGGCCTT AACTCAGATGAGGTTGATAAGATATGCGATCCAGTGACGGAATCAACGTACAAGGACTTATGGCTAGCAACTGCTGAGGAAAAAAAGATATTCCAAGAAG TGTTTGCTTGTCTTTCGAATGATGTAATCCATTCGAGGTTTGCTTTGAGGCAGAACATAAACTACTGGAGGGAGAAGATCGGTCACACCACGATCGATCT CGGCATAGCTCCCGATGAGATGCAACGAGTCGAGAATAGAGAAAGGAGGATTGTGGAGACAATGGAGAGAATGCAATCTGTAAGGGGACATCTTGTTTCC TTCCCCTTGGAGTTCATGCGACAAGAGGACCTGAGACCCGTGTTCAACGAGAGCGAGTTCTACACATTGCCTCGTGTCTTTCATTAG
AA sequence Show only first row Show all	>Lus10029873 pacid=23159651 polypeptide=Lus10029873 locus=Lus10029873.g ID=Lus10029873.BGIv1.0 annot-version=v1.0 MSAVESAREPLLCSNGANHYSDDGKPPASTLIYQSCSFRQFPEPGWIFDELPKASIVSVSRPDTGDISPMLLSYTIELQYKQFNLASAGFWIGNEMSLDH QVAVTQDAEEPDDGAVPLHHEDTTVRSRNVPSAAALPIIRPTLRGQQAISENAKAAMQNYLNHFLGNMDIVNSREVCKFLEVSKMSFSREYVPKLKEGYV MVKHVSLSASRDSNADRNCCPCQWFSCCNNNWSKVWAVLKPGFLAFLPDPFDTKLLDIVVFDILSEGEGGSQTLLSSQIKQRNPLRYAFQVSSGNRSIKV RTASTDKVKGWIAVINDASLRPVDGWCHPHRFGSFAPPRGLTNDGSRAQWFVDGEVSFEAIASAIEDAKSEIFITGWWLCPELYLSSHSKRRLLDIHENV KVLRYPDHLATGVYLWSHHEKLVIIDYQVCFIGGLDLCFGRYDTIEHRIGDHPAHVWPGKDYYNPREIEPDCWEDMMKDVLDRRKYPRMPWHDVQCAIWG PPCRDIARHFVQRWNHAKRSKAPHEQAIPLLMPHHHMVLPHYLGRSYDIDIDSNHFEDFDKQKDLNRQDSFSSLLLSPFENVPLLLPQEADDKIDDLLAD HSTEAKEPISFSFQNPKAESTVASVDELAFMDIHSNKQLSDESSEASGEDGHVEFPSSFGGYEQIGPRVQCHCQVIRSVGQWSAGASHTEESIHNAYCTL IENAEHYIYIENQFFISGLNDDEIIQNRVLEALYRRILRAHEEQKSFRVIVVIPLLPGFQGGIDDSGAATARAIMHWQYRTISRDKTSILYHLNALLGHK AHDYISFFGLRTYGRLSDGGPIATSQVYVHSKVMIIHDRSAFIGSSNINDRSLLGSRDSEIGVLIEDKEFVESSMNGKPWRAGKLSYTLRCSLWSEHLGL NSDEVDKICDPVTESTYKDLWLATAEEKKIFQEVFACLSNDVIHSRFALRQNINYWREKIGHTTIDLGIAPDEMQRVENRERRIVETMERMQSVRGHLVS FPLEFMRQEDLRPVFNESEFYTLPRVFH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G16785		PLDZ1, PLDZETA1...	PHOSPHOLIPASE D ZETA1, PHOSPHO...		Lus10029873 [exp]	0	1
AT1G55760			BTB/POZ domain-containing prot...		Lus10008348 [exp]	4.0	0.7979
AT5G38710			Methylenetetrahydrofolate redu...		Lus10034095 [exp]	4.5	0.8083
AT3G54000			unknown protein		Lus10016465 [exp]	5.5	0.7822
AT1G05670			Pentatricopeptide repeat (PPR-...		Lus10027025 [exp]	9.5	0.7800
AT4G27020			unknown protein		Lus10032644 [exp]	11.7	0.7739
AT5G51070		SAG15, CLPD, ER...	SENESCENCE ASSOCIATED GENE 15,...		Lus10043014 [exp]	14.2	0.7903
AT4G27020			unknown protein		Lus10043107 [exp]	15.5	0.7846
AT3G49490			unknown protein		Lus10015581 [exp]	33.8	0.7645
					Lus10021794 [exp]	36.5	0.6657
AT4G36210			Protein of unknown function (D...		Lus10028363 [exp]	37.2	0.7455

Compare expression of checked genes

Lus10029873 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.