Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27930 467 / 2e-165 Protein phosphatase 2C family protein (.1.2) AT3G05640 460 / 7e-163 Protein phosphatase 2C family protein (.1.2) AT3G16800 336 / 3e-114 Protein phosphatase 2C family protein (.1.2.3) AT1G79630 286 / 1e-92 Protein phosphatase 2C family protein (.1.2.3) AT5G36250 279 / 1e-90 Protein phosphatase 2C family protein (.1) AT3G02750 277 / 4e-89 Protein phosphatase 2C family protein (.1.2.3) AT1G16220 274 / 5e-88 Protein phosphatase 2C family protein (.1) AT4G03415 270 / 6e-87 Protein phosphatase 2C family protein (.1.2) AT1G03590 263 / 3e-84 Protein phosphatase 2C family protein (.1) AT5G01700 246 / 2e-78 Protein phosphatase 2C family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015206 [exp] 468 / 1e-165 AT5G27930 451 / 4e-159 Protein phosphatase 2C family protein (.1.2) Lus10031475 [exp] 461 / 5e-163 AT5G27930 456 / 3e-161 Protein phosphatase 2C family protein (.1.2) Lus10016831 [exp] 388 / 5e-134 AT3G05640 459 / 2e-162 Protein phosphatase 2C family protein (.1.2) Lus10037709 [exp] 386 / 3e-133 AT3G05640 462 / 2e-163 Protein phosphatase 2C family protein (.1.2) Lus10020670 [exp] 353 / 4e-123 AT5G27930 264 / 1e-88 Protein phosphatase 2C family protein (.1.2) Lus10020671 [exp] 313 / 3e-107 AT3G05640 283 / 8e-96 Protein phosphatase 2C family protein (.1.2) Lus10022588 [exp] 296 / 1e-97 AT5G36250 421 / 1e-145 Protein phosphatase 2C family protein (.1) Lus10000402 [exp] 286 / 2e-92 AT1G79630 570 / 0.0 Protein phosphatase 2C family protein (.1.2.3) Lus10021486 [exp] 280 / 3e-91 AT3G02750 418 / 6e-143 Protein phosphatase 2C family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G012200 [exp] 503 / 1e-179 AT5G27930 556 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.005G021900 [exp] 494 / 4e-176 AT5G27930 571 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.010G006100 [exp] 424 / 3e-148 AT3G05640 451 / 2e-159 Protein phosphatase 2C family protein (.1.2) Potri.010G006200 [exp] 422 / 1e-147 AT3G05640 460 / 9e-163 Protein phosphatase 2C family protein (.1.2) Potri.019G054200 [exp] 312 / 7e-103 AT3G02750 657 / 0.0 Protein phosphatase 2C family protein (.1.2.3) Potri.013G085500 [exp] 298 / 1e-97 AT3G02750 578 / 0.0 Protein phosphatase 2C family protein (.1.2.3) Potri.001G473300 [exp] 289 / 1e-93 AT1G16220 538 / 0.0 Protein phosphatase 2C family protein (.1) Potri.019G103100 [exp] 283 / 7e-92 AT4G03415 706 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.013G144100 [exp] 280 / 1e-90 AT4G03415 696 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.004G066200 [exp] 280 / 2e-90 AT1G16220 526 / 0.0 Protein phosphatase 2C family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10029874 pacid=23159703 polypeptide=Lus10029874 locus=Lus10029874.g ID=Lus10029874.BGIv1.0 annot-version=v1.0 ATGGGGCATCTTTCTGCAATGTTCAAGCTGGCTAGGTCTCTGTCGATGAGAAAAGGGAAGAACTTTAATGGAGATAGAGATGGTAGAGATACTGCTAAAG CAATGGAGAAAGAAGCTAAGAAGAATGAGATGATATTGAGATCCTCTGGGTGTGTTCATGTAACTGGTTCTAAGAACTTGGCCTCCCTTTTTTCTAAAAG AGGTGAAAAGGGTGTCAATCAGGATTGCTTCATCTTTTGGGAGGAATTCGGGTGCCAAGAAGACATGACATTCTGTGGGATATTCGACGGACATGGTCCG TGGGGACACTTTGTAGCCAAGAAAGTTAGGGAGTCACTGCCATCATTCCTTCTATGTAACTGGCAGGAGTTCCTTGCTGAACACTCCATCGATCTTGTCG ATGATGAAATCGACTTGGGATCGGACAAGAAGCTGCAGAGATTCAACATCTGGAGGCATTCTTATCTGAAGGCGTGTGCCTCTGTCGATCGGGAGCTCGA GCAGCATCGGAAGATCGATTCTTTCCACAGTGGCACTACTGCATTGACCATTGGAGAGCTTCTACATATAGCAAATGTTGGAGACTCGAGAGCTGTGCTG GCTACAACTTCAGATGATCATGATGGAAGTTTGGTCGCAATTCAGCTCACTGTCGATTTCAAGCCTAGTCTACCTCAGGAGGCAGAGAGGATAGAGGGAT GCAAAGGGAGAGTGTTTTGCCTAGCAGATGAGCCGGGTGTTCAGAGGGTATGGCTACCGGACGAGGAATCCCCGGGGCTAGCGATGTCGAGAGCGTTTGG GGACCATTGTGTTAAGGATTTCGGTCTCATTTCTGAGCCAGAAGTAACACAGAGGCACATCTCTAGTAAAGACCAGTTTGTTATCATGGCCACTGATGGA GTGTGGGATGTGGTGTCTAACCAGGAAGCAGTGCAGATCGTGTCGTCCTCTCCTGACCGATCGAAAGCCGCCAAATGTCTGGTGAAGGCCGCTGCGAAAG CTTGGAGACGGAAGAGGAAAGGGATTGCCATGGATGATATCTCGGCTGTTTGCTTGTTCTTGCATTCTCCTCCTCCTTTGTGTCACCAAGTTGTAACCAC AAAGATGGTTTGA
AA sequence Show only first row Show all	>Lus10029874 pacid=23159703 polypeptide=Lus10029874 locus=Lus10029874.g ID=Lus10029874.BGIv1.0 annot-version=v1.0 MGHLSAMFKLARSLSMRKGKNFNGDRDGRDTAKAMEKEAKKNEMILRSSGCVHVTGSKNLASLFSKRGEKGVNQDCFIFWEEFGCQEDMTFCGIFDGHGP WGHFVAKKVRESLPSFLLCNWQEFLAEHSIDLVDDEIDLGSDKKLQRFNIWRHSYLKACASVDRELEQHRKIDSFHSGTTALTIGELLHIANVGDSRAVL ATTSDDHDGSLVAIQLTVDFKPSLPQEAERIEGCKGRVFCLADEPGVQRVWLPDEESPGLAMSRAFGDHCVKDFGLISEPEVTQRHISSKDQFVIMATDG VWDVVSNQEAVQIVSSSPDRSKAAKCLVKAAAKAWRRKRKGIAMDDISAVCLFLHSPPPLCHQVVTTKMV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27930			Protein phosphatase 2C family ...		Lus10029874 [exp]	0	1
AT2G32070			Polynucleotidyl transferase, r...		Lus10003635 [exp]	1.7	0.8960
AT1G31830			Amino acid permease family pro...		Lus10007593 [exp]	3.2	0.8438
AT3G47300		SELT	SELT-like protein precursor (....		Lus10002479 [exp]	3.5	0.8315
AT4G03965			RING/U-box superfamily protein...		Lus10029993 [exp]	6.5	0.8351
AT2G43770			Transducin/WD40 repeat-like su...		Lus10002211 [exp]	7.9	0.7964
AT5G67220			FMN-linked oxidoreductases sup...		Lus10006260 [exp]	8.0	0.8046
AT5G13440			Ubiquinol-cytochrome C reducta...		Lus10028416 [exp]	9.2	0.7658
AT4G22250			RING/U-box superfamily protein...		Lus10035335 [exp]	9.7	0.8281
AT5G27930			Protein phosphatase 2C family ...		Lus10020670 [exp]	11.5	0.7728
AT5G56440			F-box/RNI-like/FBD-like domain...		Lus10023425 [exp]	11.5	0.7894

Compare expression of checked genes

Lus10029874 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.