Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G56260 119 / 5e-35 MDO1 MERISTEM DISORGANIZATION 1, unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020669 [exp] 235 / 5e-81 AT1G56260 129 / 8e-40 MERISTEM DISORGANIZATION 1, unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G021800 [exp] 145 / 8e-46 AT1G56260 144 / 1e-45 MERISTEM DISORGANIZATION 1, unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10029875 pacid=23159748 polypeptide=Lus10029875 locus=Lus10029875.g ID=Lus10029875.BGIv1.0 annot-version=v1.0 ATGGCTGAGATTCAATCAGGAACTCCGGTGAATTTAGTTGAACTGTGTCCAGGATCTCCGTTCTTTAGAGACGGAGCTTCGGTCAGAGTCACTGGAAAGG TCTTCCTGGTTCAATCGTTTCTCTTGCCTTGTTATTATAATCAGATCATTTTCGAGAATCTTAAAAACCCACCATTTGCCCTCCTCTGTAGGCTTGAAGA CTACAGCACAGAGACAGGTGTGGCTATAATGGTTGACGGCGACGCCAAACTCAAGGTAGACACCCTGCATTTGAGGGAACTGAGCTTTCAAACCGGCTCC ACCTTCATGTTCATCGGTGAACTCCTCATAGGACCTGATAATGAGGCAGTTCTGCAGGCCCGGGTCGGGAGGAATGTCGATGGCATTGACCTCGATCTCT ACCGTCAATCTATGCAGCTATTAAGGCAGTTCCAAAAAGACTACCCAAACCTGAATCAGACCGAGAATCGAACCCCCTAG
AA sequence Show only first row Show all	>Lus10029875 pacid=23159748 polypeptide=Lus10029875 locus=Lus10029875.g ID=Lus10029875.BGIv1.0 annot-version=v1.0 MAEIQSGTPVNLVELCPGSPFFRDGASVRVTGKVFLVQSFLLPCYYNQIIFENLKNPPFALLCRLEDYSTETGVAIMVDGDAKLKVDTLHLRELSFQTGS TFMFIGELLIGPDNEAVLQARVGRNVDGIDLDLYRQSMQLLRQFQKDYPNLNQTENRTP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G56260		MDO1	MERISTEM DISORGANIZATION 1, un...		Lus10029875 [exp]	0	1
AT3G27030			unknown protein		Lus10041551 [exp]	5.0	0.7413
AT3G59250			F-box/RNI-like superfamily pro...		Lus10031018 [exp]	5.3	0.7068
AT2G41970			Protein kinase superfamily pro...		Lus10021070 [exp]	9.9	0.6366
					Lus10022950 [exp]	14.3	0.6522
					Lus10037769 [exp]	17.7	0.6455
					Lus10024757 [exp]	20.9	0.6529
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10016498 [exp]	23.4	0.6288
AT3G60750			Transketolase (.1.2)		Lus10007839 [exp]	26.5	0.5586
AT2G25700		ASK3	SKP1-like 3 (.1)		Lus10043288 [exp]	27.7	0.6507
AT4G02610			Aldolase-type TIM barrel famil...		Lus10014725 [exp]	33.9	0.5669

Compare expression of checked genes

Lus10029875 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.