Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27030 1645 / 0 TPR3 TOPLESS-related 3 (.1.2) AT3G16830 1555 / 0 TPR2 TOPLESS-related 2 (.1) AT1G80490 1020 / 0 TPR1 TOPLESS-related 1 (.1.2) AT1G15750 1012 / 0 TPL, WSIP1 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) AT3G15880 981 / 0 WSIP2, TPR4 TOPLESS-RELATED 4, WUS-interacting protein 2 (.1.2.3) AT2G25420 241 / 1e-66 transducin family protein / WD-40 repeat family protein (.1) AT5G02070 152 / 6e-38 Protein kinase family protein (.1) AT3G53840 134 / 5e-32 Protein kinase superfamily protein (.1) AT1G10380 54 / 4e-07 Putative membrane lipoprotein (.1) AT1G11915 53 / 9e-07 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020668 [exp] 2173 / 0 AT5G27030 1717 / 0.0 TOPLESS-related 3 (.1.2) Lus10043258 [exp] 1378 / 0 AT3G15880 1776 / 0.0 TOPLESS-RELATED 4, WUS-interacting protein 2 (.1.2.3) Lus10023119 [exp] 1028 / 0 AT1G15750 1959 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Lus10011481 [exp] 1025 / 0 AT1G15750 2011 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Lus10038094 [exp] 920 / 0 AT1G80490 1525 / 0.0 TOPLESS-related 1 (.1.2) Lus10006650 [exp] 900 / 0 AT1G15750 1593 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Lus10019401 [exp] 814 / 0 AT1G15750 1596 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Lus10011905 [exp] 770 / 0 AT3G15880 920 / 0.0 TOPLESS-RELATED 4, WUS-interacting protein 2 (.1.2.3) Lus10001951 [exp] 656 / 0 AT1G15750 1007 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G012100 [exp] 1803 / 0 AT5G27030 1698 / 0.0 TOPLESS-related 3 (.1.2) Potri.005G021700 [exp] 1796 / 0 AT5G27030 1714 / 0.0 TOPLESS-related 3 (.1.2) Potri.003G030000 [exp] 1035 / 0 AT1G80490 1922 / 0.0 TOPLESS-related 1 (.1.2) Potri.001G200500 [exp] 1025 / 0 AT1G15750 1922 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Potri.006G066800 [exp] 1021 / 0 AT3G15880 1689 / 0.0 TOPLESS-RELATED 4, WUS-interacting protein 2 (.1.2.3) Potri.013G081300 [exp] 1018 / 0 AT1G15750 1540 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Potri.018G128000 [exp] 1013 / 0 AT3G15880 1650 / 0.0 TOPLESS-RELATED 4, WUS-interacting protein 2 (.1.2.3) Potri.006G257900 [exp] 915 / 0 AT1G80490 1466 / 0.0 TOPLESS-related 1 (.1.2) Potri.018G023900 [exp] 902 / 0 AT1G80490 1420 / 0.0 TOPLESS-related 1 (.1.2) Potri.018G023800 [exp] 790 / 0 AT1G80490 1195 / 0.0 TOPLESS-related 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10029876 pacid=23159685 polypeptide=Lus10029876 locus=Lus10029876.g ID=Lus10029876.BGIv1.0 annot-version=v1.0 ATGTCGTCGTTGAGCAGAGAATTGGTGTTTCTCATACTTCAGTTCCTTGAAGAGGAGAAATTCAAGGAGTCTGTTCACAAGCTTGAGAAAGAATCTGGGT TTTACTTCAACATGAAGTATTTCGATGAGAAAGTTCAGGCTGGAGAGTGGGACGAAGTTGAGAAGTACTTGGCAGGATTTACCAAAGTAGATGACAACAG ATACTCCATGAAGATTTTCTTTGAGATCAGGAAGCAGAAGTATCTTGAAGCACTTGATATGCAGGATAAAGCGAAGGCTGTTGAAATTTTAGTTGGAGAT TTGAAAGTATTCTCCACTTTCAACGAAGAATTGTACAAAGAAATCACACAGCTTCTGACACTTACCAATTTCAGGGAGAATGAGCAACTTTCCAAGTATG GAGATACTAAAACAGCTCGTAGTATAATGTTGATAGAGTTGAAGAAGCTTATTGAGGCAAATCCTCTTTTTCGGGATAAGCTCGCCTTTCCTACTTTGAA GGCATCAAGGTTAAGGACTCTTATCAATCAAAGTAGTATATTAGATCTGACGTCAGGTCCTTCCAGCTTAAATTGGCAGCACCAGTTGTGCAAGAACCCT AGGTCAAATCCAGACATCAAGACCTTGTTCATTGATCATACATGCACACCTTCAAATGGTCCCCTTGTTCCTGGACCTGTCAGTCTCCCTGTTGCTGCTG TTGCAAAACCTGTTGCTTATACATCTCTTGGGGCTCATGGTCCCTTTCCGCCTGCAGCAGCTGCTGCTAATCCTGGTGCTTTAGCTGGTTGGATGGCTAA TGCATCTGCTTCCTCATCTGTTCAAGCTGCTGTTGTTACAGCATCATCCATACCAGTTCCTCAAAATCAAGTTTCAGTTATGAAACGTCCTAGAACACCG CCAACAGCGTCTGGTATGGTCGAGTATCCAGGTCCAGATCATGAACTAATGAAACGCTTACGGCCACCACAATCTGTCGAAGAAGTTACATATCCAACCT CTCAAAGATGGTCTCTGGATGACTTGCCAAGAACTGTAGCCTTGGTGATGCAACAGGGTTCAACTGTCATGAGCATGGATTTTCACCCTTCTTACCACAC GTTACTTCTTGTTGGTTCTGCTAATGGAGAAATCACGCTGTGGGAACTTGTATTACGTCAAAGGCTGATCTCAAAACCGTTTAAAGTTTGGGACATGCAA TCTTGTTCATTGCAATTTCAGGCTTCTATGGTCAAAGATACACCAATTGCTGTTACCCGTGTTGCATGGAGTCCTGATGGAAATTTCATTGGTGTTGCAT TCAGCAAACATTTGGTTCACTTGTATTCTTATATTGGGTCAAATGATCTTCGCCAGCATCTAGAGATTGATGCCCATGGAGGTGGGGTTAACGACTTGGC TTTTGCTCATCCAAACAAACAACTATGTGTTGTAACATGTGGAGATGATAAGCTAATAAAGGTATGGGATTTGACTGGGAAGAAGGTGTTTCATTTTGAA GGCCATGAGGCACCGGTATATTCGATCTGCCCACACCACAAGGAAAGCATCCAGTTTATCTTCTCAACCGATGTCGATGGGAAGATAAAAGCCTGGCTAT ATGACAACATGGGATCCAGAGTTGACTATGACGCGCCTGGTCGCTGGTGCACTACTATGCTTTACAGTGCTGATGGGAGTAGGTTGTTTTCTTGCGGAAC CAGCAAAGAAGGGGAATCTTATCTTGTAGAGTGGAATGAAAGTGAAGGAGCCATTAGGAGGAAGTATTCTGGGTTTGGGAAGAAATCTGCAGCAGGAGTT GCACAATTTGACACTACACAGAACCACTTCTTGGCTGTGGGCGAAGATGGTCGGATAAAGTTTTGGGATATGGATGATACTAGCATGCTCACTAGCACTG AAGCTGACGGTGGACTTCCGGCCGTTCCACGGCTGAGATTCAGCAAGGATGGAAAGCTTCTTGCGGTGATGACTGCAGACAATGGGTTTAAGATACTTGC TAATGGTGCTGGACTTAGGTCTTTGAGAGCAGTTGAAAACCCACCCTTTGAAGCATTGCGCTCCCCTGTCGAATCTATTTCTGTCAAGCCTTCTGTCGCA TCTGGCGTTGGAAATGTTAGTCCACTCAATTTGAAAGTGGAAAGAAGCTCTCCTCCTCGTCCTTCTCCAGTCCAGAATGGGGTAGATCCCGTGAATAGAA ATGCGGAAAAGCCAAGAGCTGTGGAAGAAGCAGTTGAGAAGTCCAAGCCCTGGCAGTTGACTGAAATAGTAGAACCTAGCGCGTGTCGAATGGTCACCTT GCCTGAAAACCCAGATACTTCAAGCAAGGTTGTCCGACTTCTTTATACAAACTCTGGTGTCGGCATTCTGGCATTGGGGTCAAATGGCATCCAGAAGCTT TGGAAATGGGCACGGAATGAACAAAACCCTACTGGAAAGGCCACTGCCAGCGCTGTCCCTCAACACTGGCAACCAAACAGTGGGCTTCTTATGAACAATG ATGTAGCAGGTGTAAACCTAGAAGAAGCCTTCCCTTGTATAGCACTCTCGAAGAACGACTCGTACGTAATGTCAGCAGCTGGCGGGAAGGTTTCACTGTT CAACATGATGACTTTCAAGGTAATGACAACGTTCATGTCTCCTGCTCCTGCCTCTACTTTCCTGGCATTCCATCCCCAGGACAACAATATCATAGCCATT GGTATGGAGGATTCAACAATCCACATTTACAACGTCAGAGTAGATGAGGTGAAAACGAAATTGAAGGGTCACCAGAAGCGAATAACCGGATTAGCTTTCT CCACCAGTCTTAATGTCTTGGTCTCATCTGGTGCTGATGCTCAACTTTGCATTTGGAGTGTCGACTCATGGGACAAACGGAAAACAGTTCCGGTTCAGAT CCCAGCTGGAAAGGCACAAACTGGGGAAACTCGAGTGCAGTTCCACTCGGATCAGATTCGCCTGCTTGTCGTACACGAGTCGCAGCTGGCCATATATGAT GCCTCCAAAATGGAATGCGTTCGTCAGTGGAAGCCACACGATGGAATCTCCGCACCAATATCTAATGCAGCATACTCCTGCAACAGCCAGTTAATCTACG CAACTTTCTGCGATGGTAGCGTCGGAGTGTTTGATGCCGATACTCTAAGGCTAAGATGTCGCATTGCTCCATCAGCTTATCTACCTCAGTCAGTCTTAAG CGGGAGCCAGCCAGTCTACCCGTTGGTGGTTGCTGCCCACCCTCAGGAGCCGAACCAGTTAGCCATTGGGTTGACGGACGGAACGGTGAAAGTGATGGAG CCAACCGAGTCGGAGGCGAAATGGGGGTCGTCTCCTCCTGCCGATAATGGGATTCTGACCACTTCGTCATCGACGACGAGCAACCACACACCTGATCAGT TGCAAAGCAAGCCAAGTGGTGAAACCAGAAGTGGGCCAACTTGGGATTCCATGGTTCTTTGCTTCAGTGCTCAACATTCACTCCTTCCTCTCCCAGTACC CTTACTTACCACACCAATGATCACGGCAACCCTCGAGGCATGTCCTCGATGCGGTAACATGAAGGTCCCATACCCGCTCAGCACGAGTAACAGTTGTGGC GACCCTAGGTACAGAGTCTACTGTAACAATCGCACCCTGGAGTTCATGTCGGCTCAGGGGGTTTACTATAAAATCCTAAGCATCAACCCGAGTAGTTCCA AGCTCGTCATAAGCCCTCCTTCAATCAAAACCAACGTGTGCTACTCGTCTGACCTTGGTTTAGGAGGGATTACACTTGATGACAAGCTGCCGTTCAACAT CTCGACTCGTAACACTGTTTTGCTGTTTAACTGCTCTGATAACATCCTTCTGGCGCCGTTGAACTGTTCCTCAGCCAGCTTTTGTCGCAAATTTGAAGCT TTGGAAGTAGGGAGGGGATGCAAAGGTACTCTGTGCTGCCATTACTTGAAAGATTCAGCCATGACCTCTCACATGATCAGGGTTAGGATGGGAGGGTGCA CTGCTTACACATCGGTGGTCAACACAAATCCCGACAATCCTGCGACTGTGTGGAACCACGGCATTGAACTCCAATGGGTGCCTCCTAGCTGA
AA sequence Show only first row Show all	>Lus10029876 pacid=23159685 polypeptide=Lus10029876 locus=Lus10029876.g ID=Lus10029876.BGIv1.0 annot-version=v1.0 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFYFNMKYFDEKVQAGEWDEVEKYLAGFTKVDDNRYSMKIFFEIRKQKYLEALDMQDKAKAVEILVGD LKVFSTFNEELYKEITQLLTLTNFRENEQLSKYGDTKTARSIMLIELKKLIEANPLFRDKLAFPTLKASRLRTLINQSSILDLTSGPSSLNWQHQLCKNP RSNPDIKTLFIDHTCTPSNGPLVPGPVSLPVAAVAKPVAYTSLGAHGPFPPAAAAANPGALAGWMANASASSSVQAAVVTASSIPVPQNQVSVMKRPRTP PTASGMVEYPGPDHELMKRLRPPQSVEEVTYPTSQRWSLDDLPRTVALVMQQGSTVMSMDFHPSYHTLLLVGSANGEITLWELVLRQRLISKPFKVWDMQ SCSLQFQASMVKDTPIAVTRVAWSPDGNFIGVAFSKHLVHLYSYIGSNDLRQHLEIDAHGGGVNDLAFAHPNKQLCVVTCGDDKLIKVWDLTGKKVFHFE GHEAPVYSICPHHKESIQFIFSTDVDGKIKAWLYDNMGSRVDYDAPGRWCTTMLYSADGSRLFSCGTSKEGESYLVEWNESEGAIRRKYSGFGKKSAAGV AQFDTTQNHFLAVGEDGRIKFWDMDDTSMLTSTEADGGLPAVPRLRFSKDGKLLAVMTADNGFKILANGAGLRSLRAVENPPFEALRSPVESISVKPSVA SGVGNVSPLNLKVERSSPPRPSPVQNGVDPVNRNAEKPRAVEEAVEKSKPWQLTEIVEPSACRMVTLPENPDTSSKVVRLLYTNSGVGILALGSNGIQKL WKWARNEQNPTGKATASAVPQHWQPNSGLLMNNDVAGVNLEEAFPCIALSKNDSYVMSAAGGKVSLFNMMTFKVMTTFMSPAPASTFLAFHPQDNNIIAI GMEDSTIHIYNVRVDEVKTKLKGHQKRITGLAFSTSLNVLVSSGADAQLCIWSVDSWDKRKTVPVQIPAGKAQTGETRVQFHSDQIRLLVVHESQLAIYD ASKMECVRQWKPHDGISAPISNAAYSCNSQLIYATFCDGSVGVFDADTLRLRCRIAPSAYLPQSVLSGSQPVYPLVVAAHPQEPNQLAIGLTDGTVKVME PTESEAKWGSSPPADNGILTTSSSTTSNHTPDQLQSKPSGETRSGPTWDSMVLCFSAQHSLLPLPVPLLTTPMITATLEACPRCGNMKVPYPLSTSNSCG DPRYRVYCNNRTLEFMSAQGVYYKILSINPSSSKLVISPPSIKTNVCYSSDLGLGGITLDDKLPFNISTRNTVLLFNCSDNILLAPLNCSSASFCRKFEA LEVGRGCKGTLCCHYLKDSAMTSHMIRVRMGGCTAYTSVVNTNPDNPATVWNHGIELQWVPPS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27030		TPR3	TOPLESS-related 3 (.1.2)		Lus10029876 [exp]	0	1
AT4G11860			Protein of unknown function (D...		Lus10006717 [exp]	1.0	0.8555
AT5G07980			dentin sialophosphoprotein-rel...		Lus10040532 [exp]	4.5	0.8352
AT2G39260			binding;RNA binding (.1)		Lus10023481 [exp]	5.9	0.7875
AT1G80260		EMB1427	embryo defective 1427, Spc97 /...		Lus10028588 [exp]	6.3	0.7853
AT5G12400			DNA binding;zinc ion binding;D...		Lus10014918 [exp]	7.1	0.7951
AT3G01150		ATPTB1, PTB	polypyrimidine tract-binding p...		Lus10005233 [exp]	9.5	0.7878
AT5G42220			Ubiquitin-like superfamily pro...		Lus10021830 [exp]	10.8	0.8148
AT1G25540		MED25, PFT1	PHYTOCHROME AND FLOWERING TIME...		Lus10034282 [exp]	13.7	0.8131
AT1G79350		EMB1135	embryo defective 1135, RING/FY...		Lus10001760 [exp]	16.6	0.7669
AT1G15780			unknown protein		Lus10025452 [exp]	17.2	0.7266

Compare expression of checked genes

Lus10029876 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.